FC920777

Overview
NameFC920777
Unique NameFC920777
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length695
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig2430 contig Ccv1_Contig2430:35..729. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of FC920777 vs. ExPASy Swiss-Prot
Match: QORL_ARATH (Quinone oxidoreductase-like protein At1g23740, chloroplastic OS=Arabidopsis thaliana GN=At1g23740 PE=1 SV=2)

HSP 1 Score: 196.052 bits (497), Expect = 1.548e-49
Identity = 96/142 (67.61%), Postives = 110/142 (77.46%), Query Frame = 2 
Query:  269 TKVGTVPSEMKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTXXXXXXXXXXXXXXXXXKEFKEGDEVYGDINEKALGGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPL 694
            T   ++P EMKAW+Y +YGGVDVLK +  + VP++KEDQVLIKVVAAALNPVD KRRQGKFKATDSPLPT                 K+ KEGDEVY +++EKAL GPKQFGSLAEYTAVEE+LLA KPKN+DF QAAGLPL
Sbjct:   69 TADASIPKEMKAWVYSDYGGVDVLKLESNIVVPEIKEDQVLIKVVAAALNPVDAKRRQGKFKATDSPLPTVPGYDVAGVVVKVGSAVKDLKEGDEVYANVSEKALEGPKQFGSLAEYTAVEEKLLALKPKNIDFAQAAGLPL 210
The following BLAST results are available for this feature:
BLAST of FC920777 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
QORL_ARATH1.548e-4967.61Quinone oxidoreductase-like protein At1g23740, chl... [more]
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Properties
Property NameValue
Genbank descriptionC32012H07EF RVDevelop1 Citrus clementina cDNA clone C32012H07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920777 ID=FC920777; Name=FC920777; organism=Citrus clementina; type=EST; length=695bp
AGAAGCATAAGCCGTTGGTGAGAACTACAACGTACGGTTGCAACAAATGG
AGACCATACTTACTACTACTGCTTCTAAACTCACAATCTTTCATTCTATC
TCCTCCACCAAATTAAATTCATTTTCTCGAAAATTTTCCGTCGGTTTCTC
GGGAAACAAAAACAGGAAAAAAGTAACCACCCTTAAGCAAGGCTCATTTT
CTTACCTTCCTCTTGGAGTTCAAGCAAGTGCATCACAAGCTGCAGCATCG
TCCACTGAGGCTGAGCCCACTAAAGTGGGAACTGTTCCAAGCGAAATGAA
GGCTTGGCTGTATGGGGAATATGGGGGCGTTGATGTTTTGAAGTTCGACG
AGAAAGTGACAGTGCCTCAAGTGAAGGAGGATCAAGTGTTGATCAAAGTT
GTCGCTGCTGCCCTTAATCCTGTTGATGGGAAGAGAAGGCAGGGCAAGTT
CAAGGCCACTGATTCTCCTCTCCCGACTGTTCCAGGCTATGATGTTGCTG
GTGTAGTGGTAAAGGTTGGCACTCAAGTGAAGGAATTTAAGGAGGGGGAT
GAAGTATACGGGGACATAAATGAGAAAGCTTTGGGAGGGCCCAAACAGTT
TGGCTCTTTGGCGGAGTACACTGCGGTTGAAGAGAGGTTACTGGCCCCAA
AACCTAAGAATTTGGACTTTGTTCAGGCTGCTGGCCTTCCGCTCG
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