FC920787

Overview
NameFC920787
Unique NameFC920787
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length769
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC920787_ssr212 microsatellite FC920787_ssr212:212..223. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of FC920787 vs. ExPASy Swiss-Prot
Match: CDKG2_ORYSJ (Cyclin-dependent kinase G-2 OS=Oryza sativa subsp. japonica GN=CDKG-2 PE=2 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 5.410e-17
Identity = 67/203 (33.00%), Postives = 98/203 (48.28%), Query Frame = 3
Query:  129 VSDSRVGMSPSFLEEA--QIGADDLDKTQLEEEEFVPAKHISTSRWASDSD-----SPMARSLSDREDTPKREEQASKSSTPESGEIFRES---------SEDEARLLGSDSEVGVHSSEDEYFGDELEDN---DVMAIDKTLDEDTGVDQLEDEEPVVSVQRSMNMLQGCRSVFEFE--NSTNK*RTYGIVYRARDKSRGKL 674
            V  S + + P+   E+  Q+      +   EEEE+   ++ISTSRWA  +D     +P  +  S          Q  K+ +PE GE+             S D  RL G+D    +   +D+Y   + +D+   D+      +D +  V + E  EPV    R +NMLQGCRSV EFE  N  N+  TYG+VYRARDK  G++
Sbjct:  190 VEKSPMDVEPAVASESPEQLQEHAESRVMEEEEEYSTMRNISTSRWAGANDDEEEGAPHRKKKSASPADSAELGQRKKALSPELGEVVASDISGGRTMSRSSDSGRL-GADENEDLEVDKDDYMDVDRDDDGNSDIANHQSGMDSEYEVRRSETPEPVKPPHRCINMLQGCRSVDEFERLNKINE-GTYGVVYRARDKKTGEI 390          
BLAST of FC920787 vs. ExPASy Swiss-Prot
Match: CDKG2_ORYSI (Cyclin-dependent kinase G-2 OS=Oryza sativa subsp. indica GN=CDKG-2 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 5.410e-17
Identity = 67/203 (33.00%), Postives = 98/203 (48.28%), Query Frame = 3
Query:  129 VSDSRVGMSPSFLEEA--QIGADDLDKTQLEEEEFVPAKHISTSRWASDSD-----SPMARSLSDREDTPKREEQASKSSTPESGEIFRES---------SEDEARLLGSDSEVGVHSSEDEYFGDELEDN---DVMAIDKTLDEDTGVDQLEDEEPVVSVQRSMNMLQGCRSVFEFE--NSTNK*RTYGIVYRARDKSRGKL 674
            V  S + + P+   E+  Q+      +   EEEE+   ++ISTSRWA  +D     +P  +  S          Q  K+ +PE GE+             S D  RL G+D    +   +D+Y   + +D+   D+      +D +  V + E  EPV    R +NMLQGCRSV EFE  N  N+  TYG+VYRARDK  G++
Sbjct:  190 VEKSPMDVEPAVASESPEQLQEHAESRVMEEEEEYSTMRNISTSRWAGANDDEEEGAPHRKKKSASPADSAELGQRKKALSPELGEVVASDISGGRTMSRSSDSGRL-GADENEDLEVDKDDYMDVDRDDDGNSDIANHQSGMDSEYEVRRSETPEPVKPPHRCINMLQGCRSVDEFERLNKINE-GTYGVVYRARDKKTGEI 390          
BLAST of FC920787 vs. ExPASy Swiss-Prot
Match: CDKG1_ORYSI (Cyclin-dependent kinase G-1 OS=Oryza sativa subsp. indica GN=CDKG-1 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.379e-12
Identity = 66/212 (31.13%), Postives = 101/212 (47.64%), Query Frame = 3
Query:  123 STVSDSRVGMSPSFLEEAQIGADDLDKTQL---EEEEFVPAKHISTSRWASDSDSPMARSLSDREDTPKREEQAS-----------KSSTPESGEIFRESSEDEARLLGSDSEVGVHSSEDEYFGDELEDNDVMAIDKTLDEDTGVDQLEDE------------EPVVSVQRSMNMLQGCRSVFEFE--NSTNK*RTYGIVYRARDKSRGKL 674
            S++S    G SP  L+ +     + +K ++   EEE +   ++I TSRWA   D        +    PK+++  S           K ++PESGE+   +S   +    SDS V   S+  +    E+E  D + ++K  D+D     L D             E   S +R +NMLQGCRSV EFE  N+ N+  TYG+V+R RDK  G++
Sbjct:  174 SSLSSIGDGHSPMILDVSVDKVQEYEKNRIVDEEEEGYPTMRNILTSRWADAGDE------EENVFVPKKKKSVSPVDSIERGSTKKVTSPESGEVLVYNSVRSSSR-SSDSGVLQGSANRDL---EVEKGDNIDVEKAADDDYPAGHLLDSDFEGEDCRSETPECTRSPRRCINMLQGCRSVDEFERLNTINE-GTYGVVFRVRDKRTGEI 374          
BLAST of FC920787 vs. ExPASy Swiss-Prot
Match: CDKG1_ORYSJ (Cyclin-dependent kinase G-1 OS=Oryza sativa subsp. japonica GN=CDKG-1 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.801e-12
Identity = 66/209 (31.58%), Postives = 96/209 (45.93%), Query Frame = 3
Query:  123 STVSDSRVGMSPSFLEEAQIGADDLDKTQL---EEEEFVPAKHISTSRWASDSDSPMARSLSDREDTPKREEQAS-----------KSSTPESGEIF-------RESSEDEARLLGSDSEVGVHSSEDEYFGDELEDNDVMAIDKTLDEDTGVDQLEDEEPVV--SVQRSMNMLQGCRSVFEFE--NSTNK*RTYGIVYRARDKSRGKL 674
            S++S    G SP  L+ +     + +K ++   EEE +   ++I TSRWA   D        +    PK+++  S           K ++PESGE+           S D   L GS +        D    +E  D+D  A    LD D   +    E P    S +R +NMLQGCRSV EFE  N+ N+  TYG+V+R RDK  G++
Sbjct:  174 SSLSSIGDGHSPMILDVSVDKVQEYEKNRIVDEEEEGYPTMRNILTSRWADAGDE------EENVFVPKKKKSVSPVDSIERGSTKKVTSPESGEVLVYNSVRSSSRSSDSGVLQGSANRDLEVEKGDNIDVEEAADDDYPA-GHLLDSDFEGEDCRSETPECTRSPRRCINMLQGCRSVDEFERLNTINE-GTYGVVFRVRDKRTGEI 374          
The following BLAST results are available for this feature:
BLAST of FC920787 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
CDKG2_ORYSJ5.410e-1733.00Cyclin-dependent kinase G-2 OS=Oryza sativa subsp.... [more]
CDKG2_ORYSI5.410e-1733.00Cyclin-dependent kinase G-2 OS=Oryza sativa subsp.... [more]
CDKG1_ORYSI1.379e-1231.13Cyclin-dependent kinase G-1 OS=Oryza sativa subsp.... [more]
CDKG1_ORYSJ1.801e-1231.58Cyclin-dependent kinase G-1 OS=Oryza sativa subsp.... [more]
back to top
Properties
Property NameValue
Genbank descriptionC32013A08EF RVDevelop1 Citrus clementina cDNA clone C32013A08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920787 ID=FC920787; Name=FC920787; organism=Citrus clementina; type=EST; length=769bp
GTTAGTGAGGTTTTCGATGCTGCTCTGATGGAACATTTGCAAAAAGTCCA
ATCTTGGGGAACCTGGCCAAAGAATTGGACTTCTCCTCGGATAAGCTTCT
TGTGGCTGGTGGATCAGCAGAATCCACAGTATCTGATTCTCGAGTGGGTA
TGTCTCCTTCTTTCCTTGAAGAAGCACAGATTGGGGCTGATGATCTGGAT
AAGACTCAGTTGGAGGAGGAGGAGTTTGTTCCAGCAAAGCATATATCAAC
ATCACGGTGGGCATCTGATAGTGACAGTCCGATGGCCAGGTCTTTATCTG
ATAGGGAAGACACCCCTAAAAGGGAGGAACAGGCTTCAAAGAGTTCTACT
CCTGAGAGTGGTGAGATTTTTAGAGAAAGCTCAGAAGATGAGGCCAGGTT
GTTGGGATCTGATAGCGAAGTTGGGGTGCATTCAAGTGAAGATGAATATT
TTGGAGATGAGTTGGAGGATAATGACGTCATGGCTATTGATAAGACACTT
GATGAGGATACTGGTGTTGACCAGTTAGAGGATGAAGAGCCTGTTGTATC
CGTACAAAGAAGCATGAACATGCTTCAGGGTTGTAGGAGCGTGTTTGAAT
TTGAAAACTCAACAAATAAGTGAAGGACTTATGGTATTGTATATAGAGCC
AGGGATAAGAGTCGGGGGAAATTGTGGCATTGAAGAAGTGAGATGATGTA
GGAGAAAGAAGATTGTTAGATATGGTTCCTATTCATCTTGAGGAATCATA
TCTCTGTCATTGACCCCTC
back to top