FC920806

Overview
NameFC920806
Unique NameFC920806
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length697
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC920806_ssr76 microsatellite FC920806_ssr76:76..87. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig14202 contig Ccv1_Contig14202:1..697. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920806 vs. ExPASy Swiss-Prot
Match: RL4_PRUAR (60S ribosomal protein L4 OS=Prunus armeniaca GN=RPL4 PE=2 SV=1)

HSP 1 Score: 354.369 bits (908), Expect = 3.430e-97
Identity = 175/203 (86.21%), Postives = 183/203 (90.15%), Query Frame = 1
Query:   88 RPLITVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGNRPGKGKMRNRRYISR 696
            RPL+TVQSLEGDMATD + TV LPDVMKASIRPDIV FVHSNISKNSRQPYAVS+KAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRY           PSLV+ARGHKIETVPE+PLVVSDS E VE+TSAALKVLKQIGAY+DAEKAKDS   RPGKGKMRNRRYI+R
Sbjct:    9 RPLVTVQSLEGDMATDQTQTVALPDVMKASIRPDIVTFVHSNISKNSRQPYAVSKKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYAVVSAIAASAVPSLVLARGHKIETVPELPLVVSDSIEGVEETSAALKVLKQIGAYSDAEKAKDSHSIRPGKGKMRNRRYINR 211          
BLAST of FC920806 vs. ExPASy Swiss-Prot
Match: RL4A_ARATH (60S ribosomal protein L4-1 OS=Arabidopsis thaliana GN=RPL4A PE=2 SV=1)

HSP 1 Score: 337.421 bits (864), Expect = 4.340e-92
Identity = 164/203 (80.79%), Postives = 179/203 (88.18%), Query Frame = 1
Query:   88 RPLITVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGNRPGKGKMRNRRYISR 696
            RPL+T+Q+L+GDM+TD SSTV LPDVM A +RPDIV FVH+ IS NSRQPYAVS+KAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQ AFGNMCRGGRMFAPTKIWRRWHR++NVN KR+           P+LVMARGHKIE VPEMPLVVSDSAE+VEKTSAA+KVLKQIGAY DAEKAK+S G RPGKGKMRNRRYISR
Sbjct:    7 RPLVTIQTLDGDMSTDQSSTVVLPDVMTAPVRPDIVNFVHAQISNNSRQPYAVSKKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQAAFGNMCRGGRMFAPTKIWRRWHRRVNVNMKRHAIVSAIAATAVPALVMARGHKIENVPEMPLVVSDSAEAVEKTSAAIKVLKQIGAYDDAEKAKNSIGIRPGKGKMRNRRYISR 209          
BLAST of FC920806 vs. ExPASy Swiss-Prot
Match: RL4B_ARATH (60S ribosomal protein L4-2 OS=Arabidopsis thaliana GN=RPL4D PE=1 SV=2)

HSP 1 Score: 336.65 bits (862), Expect = 7.402e-92
Identity = 164/203 (80.79%), Postives = 178/203 (87.68%), Query Frame = 1
Query:   88 RPLITVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGNRPGKGKMRNRRYISR 696
            RPL+TVQ L+GDM+TD S+TV LPDVM A +RPDIV FVH+ IS NSRQPYAVS+KAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQ AFGNMCRGGRMFAPTKIWRRWHR++NVN KR+           P+LVMARGHKIE VPEMPLVVSDSAE+VEKTSAA+KVLKQIGAY DAEKAK+S G RPGKGKMRNRRYISR
Sbjct:    8 RPLVTVQGLDGDMSTDQSTTVTLPDVMTAPVRPDIVNFVHAQISNNSRQPYAVSKKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQAAFGNMCRGGRMFAPTKIWRRWHRRVNVNMKRHAIVSAIAATAVPALVMARGHKIENVPEMPLVVSDSAEAVEKTSAAIKVLKQIGAYDDAEKAKNSIGIRPGKGKMRNRRYISR 210          
BLAST of FC920806 vs. ExPASy Swiss-Prot
Match: RL4_MOUSE (60S ribosomal protein L4 OS=Mus musculus GN=Rpl4 PE=1 SV=3)

HSP 1 Score: 260.381 bits (664), Expect = 6.742e-69
Identity = 128/203 (63.05%), Postives = 152/203 (74.88%), Query Frame = 1
Query:   88 RPLITVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGNRPGKGKMRNRRYISR 696
            RPLI+V S +G+    +   V LP V KA IRPDIV FVH+N+ KN+RQPYAVS  AGHQTSAESWGTGRAV+RIPRV GGGTHR+GQGAFGNMCRGGRMFAPTK WRRWHR++N  QKRY           P+LVM++GH+IE VPE+PLVV D  E  +KT  A+++LK++ A+ D +K   SQ  R GKGKMRNRR I R
Sbjct:    5 RPLISVYSEKGE---SSGKNVTLPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVSELAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQKRYAICSALAASALPALVMSKGHRIEEVPELPLVVEDKVEGYKKTKEAVQLLKKLKAWNDIKKVYASQRMRAGKGKMRNRRRIQR 204          
BLAST of FC920806 vs. ExPASy Swiss-Prot
Match: RL4_RAT (60S ribosomal protein L4 OS=Rattus norvegicus GN=Rpl4 PE=1 SV=3)

HSP 1 Score: 259.61 bits (662), Expect = 1.150e-68
Identity = 128/203 (63.05%), Postives = 152/203 (74.88%), Query Frame = 1
Query:   88 RPLITVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGNRPGKGKMRNRRYISR 696
            RPLI+V S +G+    +   V LP V KA IRPDIV FVH+N+ KN+RQPYAVS  AGHQTSAESWGTGRAV+RIPRV GGGTHR+GQGAFGNMCRGGRMFAPTK WRRWHR++N  QKRY           P+LVM++GH +E VPE+PLVV D  ES +KT  A+++LK++ A+ D +K   SQ  R GKGKMRNRR I R
Sbjct:    5 RPLISVYSEKGE---SSGKNVTLPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVSELAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQKRYAICSALAASALPALVMSKGHCVEEVPELPLVVEDKVESYKKTKEAVQLLKKLKAWNDIKKVYASQRMRAGKGKMRNRRRIQR 204          
BLAST of FC920806 vs. ExPASy Swiss-Prot
Match: RL4_URECA (60S ribosomal protein L4 OS=Urechis caupo GN=RPL4 PE=2 SV=1)

HSP 1 Score: 259.225 bits (661), Expect = 1.502e-68
Identity = 127/203 (62.56%), Postives = 153/203 (75.37%), Query Frame = 1
Query:   88 RPLITVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGNRPGKGKMRNRRYISR 696
            RPLITV S   D    + S V LP V +A IRPDIV FVH  + KN RQPYAVS+KAGHQTSAESWGTGRAV+RIPRV GGGTHR+GQGAFGNMCRG RMFAPTK WRRWHR++N  Q+R+           P++VM++GH IE +PE+PLVVSDS ES++KT  A+ VL+++ A+ D EK K+S+  R GKGK+RNRR I R
Sbjct:    4 RPLITVHS---DKGAASESNVTLPAVFRAPIRPDIVNFVHFELKKNGRQPYAVSQKAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGRRMFAPTKTWRRWHRRVNTTQRRHALVSAIAATGIPAVVMSKGHCIEQIPEVPLVVSDSVESIKKTKEAVVVLRRLKAWPDVEKVKNSRRFRAGKGKLRNRRAIQR 203          
BLAST of FC920806 vs. ExPASy Swiss-Prot
Match: RL4_HUMAN (60S ribosomal protein L4 OS=Homo sapiens GN=RPL4 PE=1 SV=5)

HSP 1 Score: 259.225 bits (661), Expect = 1.502e-68
Identity = 128/203 (63.05%), Postives = 151/203 (74.38%), Query Frame = 1
Query:   88 RPLITVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGNRPGKGKMRNRRYISR 696
            RPLI+V S +G+    +   V LP V KA IRPDIV FVH+N+ KN+RQPYAVS  AGHQTSAESWGTGRAV+RIPRV GGGTHR+GQGAFGNMCRGGRMFAPTK WRRWHR++N  QKRY           P+LVM++GH+IE VPE+PLVV D  E  +KT  A+ +LK++ A+ D +K   SQ  R GKGKMRNRR I R
Sbjct:    5 RPLISVYSEKGE---SSGKNVTLPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVSELAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQKRYAICSALAASALPALVMSKGHRIEEVPELPLVVEDKVEGYKKTKEAVLLLKKLKAWNDIKKVYASQRMRAGKGKMRNRRRIQR 204          
BLAST of FC920806 vs. ExPASy Swiss-Prot
Match: RL4_CANFA (60S ribosomal protein L4 OS=Canis familiaris GN=RPL4 PE=1 SV=2)

HSP 1 Score: 259.225 bits (661), Expect = 1.502e-68
Identity = 128/203 (63.05%), Postives = 151/203 (74.38%), Query Frame = 1
Query:   88 RPLITVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGNRPGKGKMRNRRYISR 696
            RPLI+V S +G+    +   V LP V KA IRPDIV FVH+N+ KN+RQPYAVS  AGHQTSAESWGTGRAV+RIPRV GGGTHR+GQGAFGNMCRGGRMFAPTK WRRWHR++N  QKRY           P+LVM++GH+IE VPE+PLVV D  E  +KT  A+ +LK++ A+ D +K   SQ  R GKGKMRNRR I R
Sbjct:    5 RPLISVYSEKGE---SSGKNVTLPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVSELAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQKRYAICSALACLSLPALVMSKGHRIEEVPELPLVVEDKVEGYKKTKEAVLLLKKLKAWNDIKKVYASQRMRAGKGKMRNRRRIQR 204          
BLAST of FC920806 vs. ExPASy Swiss-Prot
Match: RL4_BOVIN (60S ribosomal protein L4 OS=Bos taurus GN=RPL4 PE=2 SV=3)

HSP 1 Score: 259.225 bits (661), Expect = 1.502e-68
Identity = 128/203 (63.05%), Postives = 151/203 (74.38%), Query Frame = 1
Query:   88 RPLITVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGNRPGKGKMRNRRYISR 696
            RPLI+V S +G+    +   V LP V KA IRPDIV FVH+N+ KN+RQPYAVS  AGHQTSAESWGTGRAV+RIPRV GGGTHR+GQGAFGNMCRGGRMFAPTK WRRWHR++N  QKRY           P+LVM++GH+IE VPE+PLVV D  E  +KT  A+ +LK++ A+ D +K   SQ  R GKGKMRNRR I R
Sbjct:    5 RPLISVYSEKGE---SSGKNVTLPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVSELAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQKRYAICSALAASALPALVMSKGHRIEEVPELPLVVEDKVEGYKKTKEAVLLLKKLKAWNDIKKVYASQRMRAGKGKMRNRRRIQR 204          
BLAST of FC920806 vs. ExPASy Swiss-Prot
Match: RL4B_XENLA (60S ribosomal protein L4-B (Fragment) OS=Xenopus laevis GN=rpl4-B PE=2 SV=1)

HSP 1 Score: 259.225 bits (661), Expect = 1.502e-68
Identity = 126/203 (62.07%), Postives = 153/203 (75.37%), Query Frame = 1
Query:   88 RPLITVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGNRPGKGKMRNRRYISR 696
            RPLI+V S +G+ +      V +P V KA IRPDIV FVH+N+ KN+RQPYAVS+ AGHQTSAESWGTGRAV+RIPRV GGGTHR+GQGAFGNMCRGGRMFAPTK WRRWHR++N  QKRY           P+L+M++GH+IE +PE+PLVV D  ES +KT  A+ +LK++ A+ D +K   SQ  R GKGKMRNRR I R
Sbjct:    4 RPLISVYSEKGETS---GKNVTMPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVSKLAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQKRYAVCSALAASALPALIMSKGHRIEEIPEVPLVVEDKVESYKKTKEAVLLLKKLKAWNDIKKVYASQRMRAGKGKMRNRRRIQR 203          
The following BLAST results are available for this feature:
BLAST of FC920806 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 69
Match NameE-valueIdentityDescription
RL4_PRUAR3.430e-9786.2160S ribosomal protein L4 OS=Prunus armeniaca GN=RP... [more]
RL4A_ARATH4.340e-9280.7960S ribosomal protein L4-1 OS=Arabidopsis thaliana... [more]
RL4B_ARATH7.402e-9280.7960S ribosomal protein L4-2 OS=Arabidopsis thaliana... [more]
RL4_MOUSE6.742e-6963.0560S ribosomal protein L4 OS=Mus musculus GN=Rpl4 P... [more]
RL4_RAT1.150e-6863.0560S ribosomal protein L4 OS=Rattus norvegicus GN=R... [more]
RL4_URECA1.502e-6862.5660S ribosomal protein L4 OS=Urechis caupo GN=RPL4 ... [more]
RL4_HUMAN1.502e-6863.0560S ribosomal protein L4 OS=Homo sapiens GN=RPL4 P... [more]
RL4_CANFA1.502e-6863.0560S ribosomal protein L4 OS=Canis familiaris GN=RP... [more]
RL4_BOVIN1.502e-6863.0560S ribosomal protein L4 OS=Bos taurus GN=RPL4 PE=... [more]
RL4B_XENLA1.502e-6862.0760S ribosomal protein L4-B (Fragment) OS=Xenopus l... [more]

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Properties
Property NameValue
Genbank descriptionC32013C05EF RVDevelop1 Citrus clementina cDNA clone C32013C05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920806 ID=FC920806; Name=FC920806; organism=Citrus clementina; type=EST; length=697bp
GATGTCAATAAAACCCTAGCAACTCAACTCTCCCCCTTTCCCCATACCCC
CCCAAAAAAAAACAAAAAAGCTATGGCCGCCGCCGCCCGTCCTTTGATTA
CCGTCCAGTCTTTGGAAGGTGACATGGCCACCGACGCAAGCTCCACCGTC
CCTTTGCCCGACGTCATGAAGGCCTCTATCCGACCCGACATCGTGGGCTT
TGTCCACTCTAACATCTCCAAGAACAGTCGCCAGCCTTACGCCGTTTCCA
GGAAGGCAGGGCACCAGACCTCCGCCGAATCATGGGGTACCGGTCGCGCC
GTCTCCCGTATTCCCCGTGTCCCCGGAGGCGGTACCCACCGTGCCGGCCA
GGGAGCCTTCGGTAACATGTGTCGCGGTGGTCGCATGTTCGCTCCCACAA
AGATCTGGCGCCGATGGCACCGTAAGATCAACGTCAATCAGAAGCGATAC
GCCATCGTTTCCGCCATTGCCGCCTCCGCTGTCCCCTCACTTGTGATGGC
CCGCGGTCACAAGATCGAGACTGTTCCGGAAATGCCCCTGGTCGTCAGTG
ATTCCGCCGAGAGTGTGGAGAAAACATCAGCTGCCCTTAAAGTTCTGAAG
CAGATCGGTGCATATGCTGACGCCGAGAAGGCGAAGGACAGCCAGGGGAA
TCGCCCTGGAAAGGGTAAAATGAGAAATAGGCGTTACATTTCTCGCA
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