FC920808

Overview
NameFC920808
Unique NameFC920808
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length676
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC920808_ssr21 microsatellite FC920808_ssr21:21..40. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig14141 contig Ccv1_Contig14141:1..675. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920808 vs. ExPASy Swiss-Prot
Match: EXPA4_ARATH (Expansin-A4 OS=Arabidopsis thaliana GN=EXPA4 PE=1 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 4.203e-92
Identity = 82/101 (81.19%), Postives = 93/101 (92.08%), Query Frame = 3
Query:  117 LFATANAKIPGVFAGGPWQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFWPPEL 419
            LF+ A+A+IPG+++GG WQ+AHATFYGGSDASGTMGGACGYGNLYSQGYG NTAALSTALFNNG+SCGACFELKC  DPQWC+ G+P+ILITATNF PP L
Sbjct:   14 LFSLADARIPGIYSGGAWQNAHATFYGGSDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGMSCGACFELKCANDPQWCHSGSPSILITATNFCPPNL 114          

HSP 2 Score: 171.785 bits (434), Expect = 4.203e-92
Identity = 79/87 (90.80%), Postives = 82/87 (94.25%), Query Frame = 1
Query:  403 FGPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPVSYRRVPCRKRGGIRFTINGFRYFNLVLVTNVAGAGDIVRVSVKG 663
            F PPN AQPSDNGGWCNPPR HFDLAMP+FLK+AQYRAGIVPVSYRRVPCRKRGGIRFTING RYFNLVL+TNVAGAGDIVR SVKG
Sbjct:  109 FCPPNLAQPSDNGGWCNPPREHFDLAMPVFLKIAQYRAGIVPVSYRRVPCRKRGGIRFTINGHRYFNLVLITNVAGAGDIVRASVKG 195          
BLAST of FC920808 vs. ExPASy Swiss-Prot
Match: EXPA3_ARATH (Expansin-A3 OS=Arabidopsis thaliana GN=EXPA3 PE=2 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 1.588e-91
Identity = 88/112 (78.57%), Postives = 98/112 (87.50%), Query Frame = 3
Query:   81 FRMLCFFSVALSLFATA-NAKIPGVFAGGPWQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFWPP 413
            FR+  + +V  S   TA NAKIPGV++GGPWQ+AHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNG SCGACFE+KC  DP+WC PGNP+IL+TATNF PP
Sbjct:    6 FRVGLWLAVTASFLLTATNAKIPGVYSGGPWQNAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGFSCGACFEIKCTDDPRWCVPGNPSILVTATNFCPP 117          

HSP 2 Score: 165.236 bits (417), Expect = 1.588e-91
Identity = 77/87 (88.51%), Postives = 80/87 (91.95%), Query Frame = 1
Query:  403 FGPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPVSYRRVPCRKRGGIRFTINGFRYFNLVLVTNVAGAGDIVRVSVKG 663
            F PPNFAQPSD+GGWCNPPR HFDLAMPMFLK+  YRAGIVPVSYRRVPCRK GGIRFT+NGFRYFNLVLVTNVAGAGDI  VSVKG
Sbjct:  114 FCPPNFAQPSDDGGWCNPPREHFDLAMPMFLKIGLYRAGIVPVSYRRVPCRKIGGIRFTVNGFRYFNLVLVTNVAGAGDINGVSVKG 200          
BLAST of FC920808 vs. ExPASy Swiss-Prot
Match: EXPA6_ARATH (Expansin-A6 OS=Arabidopsis thaliana GN=EXPA6 PE=2 SV=2)

HSP 1 Score: 181.03 bits (458), Expect = 2.702e-91
Identity = 80/104 (76.92%), Postives = 91/104 (87.50%), Query Frame = 3
Query:  102 SVALSLFATANAKIPGVFAGGPWQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFWPP 413
            SV  ++ A + A+IPGV+ GG W++AHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNG SCGACFELKC  DP+WC+ G+P+I ITATNF PP
Sbjct:    9 SVLTTILALSEARIPGVYNGGGWETAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGFSCGACFELKCASDPKWCHSGSPSIFITATNFCPP 112          

HSP 2 Score: 176.022 bits (445), Expect = 2.702e-91
Identity = 80/87 (91.95%), Postives = 85/87 (97.70%), Query Frame = 1
Query:  403 FGPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPVSYRRVPCRKRGGIRFTINGFRYFNLVLVTNVAGAGDIVRVSVKG 663
            F PPNFAQPSDNGGWCNPPRPHFDLAMPMFLK+A+YRAGIVPVS+RRVPCRKRGGIRFTINGFRYFNLVLVTNVAGAG+IVR+ VKG
Sbjct:  109 FCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKIAEYRAGIVPVSFRRVPCRKRGGIRFTINGFRYFNLVLVTNVAGAGNIVRLGVKG 195          
BLAST of FC920808 vs. ExPASy Swiss-Prot
Match: EXPA9_ARATH (Expansin-A9 OS=Arabidopsis thaliana GN=EXPA9 PE=2 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 2.266e-90
Identity = 86/115 (74.78%), Postives = 96/115 (83.48%), Query Frame = 3
Query:   84 RMLCFFSVALSLFATANAKIPGVFAGGPWQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFWPPELRSA 428
            +++ F +V +    TANAKIPGV+ GGPW +AHATFYG +DASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCG+CFELKC  DP WC PGNP+ILITATNF PP    A
Sbjct:    4 KVITFMAVMVVTAFTANAKIPGVYTGGPWINAHATFYGEADASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGSCFELKCINDPGWCLPGNPSILITATNFCPPNFNQA 118          

HSP 2 Score: 165.622 bits (418), Expect = 2.266e-90
Identity = 73/87 (83.91%), Postives = 82/87 (94.25%), Query Frame = 1
Query:  403 FGPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPVSYRRVPCRKRGGIRFTINGFRYFNLVLVTNVAGAGDIVRVSVKG 663
            F PPNF Q SDNGGWCNPPR HFDLAMPMFL +A+Y+AGIVPVSYRR+PCRK+GGIRFTINGF+YFNLVLVTNVAGAGD+++VSVKG
Sbjct:  110 FCPPNFNQASDNGGWCNPPREHFDLAMPMFLSIAKYKAGIVPVSYRRIPCRKKGGIRFTINGFKYFNLVLVTNVAGAGDVIKVSVKG 196          
BLAST of FC920808 vs. ExPASy Swiss-Prot
Match: EXPA7_ORYSJ (Expansin-A7 OS=Oryza sativa subsp. japonica GN=EXPA7 PE=2 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 1.461e-86
Identity = 77/87 (88.51%), Postives = 83/87 (95.40%), Query Frame = 1
Query:  403 FGPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPVSYRRVPCRKRGGIRFTINGFRYFNLVLVTNVAGAGDIVRVSVKG 663
            F PPN+A PSDNGGWCNPPRPHFDLAMPMFL +A+YRAGIVPVSYRRVPCRK+GG+RFTINGFRYFNLVL+TNVAGAGDIVR SVKG
Sbjct:  116 FCPPNYALPSDNGGWCNPPRPHFDLAMPMFLHIAEYRAGIVPVSYRRVPCRKKGGVRFTINGFRYFNLVLITNVAGAGDIVRASVKG 202          

HSP 2 Score: 168.703 bits (426), Expect = 1.461e-86
Identity = 79/105 (75.24%), Postives = 89/105 (84.76%), Query Frame = 3
Query:  105 VALSLFATANAKIPGVFAGGPWQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCGGDP--QWCNPGNPAILITATNFWPP 413
            VAL + + A  +IPG + GG WQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVN AALSTALFN+G SCGACFE+KC   P  +WC+PG+P+ILITATNF PP
Sbjct:   16 VALQV-SPAAGRIPGAYGGGEWQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNNAALSTALFNSGQSCGACFEIKCVNQPGWEWCHPGSPSILITATNFCPP 119          
BLAST of FC920808 vs. ExPASy Swiss-Prot
Match: EXP16_ARATH (Expansin-A16 OS=Arabidopsis thaliana GN=EXPA16 PE=2 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 1.598e-85
Identity = 79/111 (71.17%), Postives = 93/111 (83.78%), Query Frame = 3
Query:   87 MLCFFSVALSLFATANAKIPGVFAGGPWQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFWPPEL 419
            +L  F + L L  T +A IP VF+GG WQ+AHATFYGG+DASGTMGGACGYGNLYSQGYG NTAALST+LFN+G SCGACFE+KC  DP+WC+PGNP++ +TATNF PP L
Sbjct:    8 LLTIFPLFLLLSFT-DAGIPRVFSGGSWQTAHATFYGGNDASGTMGGACGYGNLYSQGYGTNTAALSTSLFNSGQSCGACFEIKCVNDPKWCHPGNPSVFVTATNFCPPNL 117          

HSP 2 Score: 163.31 bits (412), Expect = 1.598e-85
Identity = 74/87 (85.06%), Postives = 79/87 (90.80%), Query Frame = 1
Query:  403 FGPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPVSYRRVPCRKRGGIRFTINGFRYFNLVLVTNVAGAGDIVRVSVKG 663
            F PPN AQPSDNGGWCNPPR HFDLAMP+FLK+A+YRAGIVP+SYRRV CRK GGIRFTING RYFNLVL+TNVAGAGDI R SVKG
Sbjct:  112 FCPPNLAQPSDNGGWCNPPRSHFDLAMPVFLKIAEYRAGIVPISYRRVACRKSGGIRFTINGHRYFNLVLITNVAGAGDIARTSVKG 198          
BLAST of FC920808 vs. ExPASy Swiss-Prot
Match: EXP15_ARATH (Expansin-A15 OS=Arabidopsis thaliana GN=EXPA15 PE=2 SV=2)

HSP 1 Score: 154.451 bits (389), Expect = 3.871e-72
Identity = 75/103 (72.82%), Postives = 81/103 (78.64%), Query Frame = 3
Query:  105 VALSLFATANAKIPGVFAGGPWQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFWPP 413
            +AL  FA     + G  AG  W +AHATFYGGSDASGTMGGACGYGNLYSQGYG NTAALSTALFNNGLSCGACFE+KC  D  WC PG  AI++TATNF PP
Sbjct:   11 IALFCFAAMVCSVHGYDAG--WVNAHATFYGGSDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGACFEIKCQSDGAWCLPG--AIIVTATNFCPP 109          

HSP 2 Score: 138.658 bits (348), Expect = 3.871e-72
Identity = 62/87 (71.26%), Postives = 73/87 (83.91%), Query Frame = 1
Query:  403 FGPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPVSYRRVPCRKRGGIRFTINGFRYFNLVLVTNVAGAGDIVRVSVKG 663
            F PPN A P++ GGWCNPP  HFDL+ P+F ++AQY+AG+VPVSYRRVPC +RGGIRFTING  YFNLVLVTNV GAGD+  V+VKG
Sbjct:  106 FCPPNNALPNNAGGWCNPPLHHFDLSQPVFQRIAQYKAGVVPVSYRRVPCMRRGGIRFTINGHSYFNLVLVTNVGGAGDVHSVAVKG 192          
BLAST of FC920808 vs. ExPASy Swiss-Prot
Match: EXPA1_ARATH (Expansin-A1 OS=Arabidopsis thaliana GN=EXPA1 PE=2 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 5.510e-71
Identity = 68/87 (78.16%), Postives = 76/87 (87.36%), Query Frame = 3
Query:  153 FAGGPWQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFWPP 413
            +AGG W +AHATFYGG DASGTMGGACGYGNLYSQGYG NTAALSTALFNNGLSCGACFE++C  D +WC PG  +I++TATNF PP
Sbjct:   22 YAGGGWVNAHATFYGGGDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGACFEIRCQNDGKWCLPG--SIVVTATNFCPP 106          

HSP 2 Score: 137.117 bits (344), Expect = 5.510e-71
Identity = 61/87 (70.11%), Postives = 72/87 (82.76%), Query Frame = 1
Query:  403 FGPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPVSYRRVPCRKRGGIRFTINGFRYFNLVLVTNVAGAGDIVRVSVKG 663
            F PPN A P++ GGWCNPP+ HFDL+ P+F ++AQYRAGIVPV+YRRVPC +RGGIRFTING  YFNLVL+TNV GAGD+    VKG
Sbjct:  103 FCPPNNALPNNAGGWCNPPQQHFDLSQPVFQRIAQYRAGIVPVAYRRVPCVRRGGIRFTINGHSYFNLVLITNVGGAGDVHSAMVKG 189          
BLAST of FC920808 vs. ExPASy Swiss-Prot
Match: EXP10_ARATH (Expansin-A10 OS=Arabidopsis thaliana GN=EXPA10 PE=2 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.594e-70
Identity = 65/85 (76.47%), Postives = 74/85 (87.06%), Query Frame = 3
Query:  159 GGPWQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFWPP 413
            GG W +AHATFYGG DASGTMGGACGYGNLYSQGYG +TAALSTALFNNGLSCG+CFE++C  D +WC PG  +I++TATNF PP
Sbjct:   23 GGGWINAHATFYGGGDASGTMGGACGYGNLYSQGYGTSTAALSTALFNNGLSCGSCFEIRCENDGKWCLPG--SIVVTATNFCPP 105          

HSP 2 Score: 141.739 bits (356), Expect = 1.594e-70
Identity = 63/87 (72.41%), Postives = 73/87 (83.91%), Query Frame = 1
Query:  403 FGPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPVSYRRVPCRKRGGIRFTINGFRYFNLVLVTNVAGAGDIVRVSVKG 663
            F PPN A  ++NGGWCNPP  HFDLA P+F ++AQYRAGIVPVSYRRVPCR+RGGIRFTING  YFNLVL+TNV GAGD+   ++KG
Sbjct:  102 FCPPNNALANNNGGWCNPPLEHFDLAQPVFQRIAQYRAGIVPVSYRRVPCRRRGGIRFTINGHSYFNLVLITNVGGAGDVHSAAIKG 188          
BLAST of FC920808 vs. ExPASy Swiss-Prot
Match: EXPA2_ORYSJ (Expansin-A2 OS=Oryza sativa subsp. japonica GN=EXPA2 PE=2 SV=2)

HSP 1 Score: 147.132 bits (370), Expect = 3.535e-70
Identity = 65/85 (76.47%), Postives = 74/85 (87.06%), Query Frame = 1
Query:  409 PPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPVSYRRVPCRKRGGIRFTINGFRYFNLVLVTNVAGAGDIVRVSVKG 663
            PPN+A P+D+GGWCNPPRPHFD+A P FL++  YRAGIVPVSYRRVPC K+GGIRFTING  YFNLVLVTNVAG GD+  VS+KG
Sbjct:  107 PPNYALPNDDGGWCNPPRPHFDMAEPAFLQIGVYRAGIVPVSYRRVPCVKKGGIRFTINGHSYFNLVLVTNVAGPGDVQSVSIKG 191          

HSP 2 Score: 139.428 bits (350), Expect = 3.535e-70
Identity = 61/84 (72.62%), Postives = 69/84 (82.14%), Query Frame = 3
Query:  162 GPWQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFWPP 413
            G WQSAHATFYGG DASGTMGGACGYGNLYS GYG NTAALST LFN+G +CG+C+EL+C  D QWC PG  ++ +TATN  PP
Sbjct:   27 GSWQSAHATFYGGGDASGTMGGACGYGNLYSTGYGTNTAALSTVLFNDGAACGSCYELRCDNDGQWCLPG--SVTVTATNLCPP 108          
The following BLAST results are available for this feature:
BLAST of FC920808 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 82
Match NameE-valueIdentityDescription
EXPA4_ARATH4.203e-9281.19Expansin-A4 OS=Arabidopsis thaliana GN=EXPA4 PE=1 ... [more]
EXPA3_ARATH1.588e-9178.57Expansin-A3 OS=Arabidopsis thaliana GN=EXPA3 PE=2 ... [more]
EXPA6_ARATH2.702e-9176.92Expansin-A6 OS=Arabidopsis thaliana GN=EXPA6 PE=2 ... [more]
EXPA9_ARATH2.266e-9074.78Expansin-A9 OS=Arabidopsis thaliana GN=EXPA9 PE=2 ... [more]
EXPA7_ORYSJ1.461e-8688.51Expansin-A7 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXP16_ARATH1.598e-8571.17Expansin-A16 OS=Arabidopsis thaliana GN=EXPA16 PE=... [more]
EXP15_ARATH3.871e-7272.82Expansin-A15 OS=Arabidopsis thaliana GN=EXPA15 PE=... [more]
EXPA1_ARATH5.510e-7178.16Expansin-A1 OS=Arabidopsis thaliana GN=EXPA1 PE=2 ... [more]
EXP10_ARATH1.594e-7076.47Expansin-A10 OS=Arabidopsis thaliana GN=EXPA10 PE=... [more]
EXPA2_ORYSJ3.535e-7076.47Expansin-A2 OS=Oryza sativa subsp. japonica GN=EXP... [more]

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Properties
Property NameValue
Genbank descriptionC32013C07EF RVDevelop1 Citrus clementina cDNA clone C32013C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920808 ID=FC920808; Name=FC920808; organism=Citrus clementina; type=EST; length=676bp
GATTCGCCACCTCCTGCGCGCTCACTCACTCACTCACTCAACTCTCTGTC
TCCCTCTCTTCAACTCCAACAATGGCTCTTTTCAGAATGCTCTGCTTTTT
CTCAGTGGCACTCTCCTTATTTGCGACGGCCAACGCCAAGATTCCCGGTG
TCTTCGCCGGTGGCCCCTGGCAATCGGCCCACGCCACTTTTTACGGTGGC
AGCGACGCTTCCGGCACTATGGGTGGTGCTTGTGGGTACGGGAATCTGTA
CAGCCAGGGCTATGGAGTGAACACGGCGGCTCTCAGTACGGCGCTGTTCA
ACAACGGCTTGAGCTGCGGCGCGTGCTTCGAGTTAAAGTGCGGCGGCGAC
CCGCAATGGTGTAACCCGGGTAACCCGGCCATTCTGATCACGGCGACCAA
CTTTTGGCCCCCCGAACTTCGCTCAGCCCTCCGATAATGGCGGGTGGTGC
AACCCTCCTCGCCCTCATTTCGATCTGGCCATGCCTATGTTCCTCAAGCT
CGCCCAGTACCGCGCTGGTATCGTCCCCGTTTCTTACCGCAGGGTGCCCT
GCAGAAAGCGAGGCGGAATCAGATTCACAATTAACGGTTTCCGTTACTTC
AACTTGGTCTTGGTCACCAACGTCGCGGGCGCAGGGGATATCGTGCGCGT
GAGCGTGAAAGGGCCAACACCCATGG
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