FC920809
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC920809 vs. ExPASy Swiss-Prot
Match: PSMD4_ARATH (26S proteasome non-ATPase regulatory subunit 4 OS=Arabidopsis thaliana GN=MBP1 PE=1 SV=1) HSP 1 Score: 273.863 bits (699), Expect = 2.990e-79 Identity = 133/164 (81.10%), Postives = 150/164 (91.46%), Query Frame = 2 Query: 116 MVLEATLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVRVLVTPTSDLGKILACMHGLEIGGELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGE-DDEGNTEKLEALLAAVN 604 MVLEAT+ICIDNSEWMRNGDY+PSR QAQTEA NL+CGAKTQ NPENTVG++TMAGKGVRVL TPTSDLGKILACMHGL++GGE+NL A IQ+AQLALKHRQNK Q+QRIIVF GSPIK+EKK LE++G++LKKNSV+LDIVNFGE DDE +KLEALL AVN Sbjct: 1 MVLEATMICIDNSEWMRNGDYSPSRLQAQTEAVNLLCGAKTQSNPENTVGILTMAGKGVRVLTTPTSDLGKILACMHGLDVGGEINLTAAIQIAQLALKHRQNKNQRQRIIVFAGSPIKYEKKALEIVGKRLKKNSVSLDIVNFGEDDDEEKPQKLEALLTAVN 164 HSP 2 Score: 43.1282 bits (100), Expect = 2.990e-79 Identity = 19/25 (76.00%), Postives = 22/25 (88.00%), Query Frame = 1 Query: 604 HNDSSHLVHVPPWSNALSDVLLSTP 678 +ND SH+VHVP +NALSDVLLSTP Sbjct: 165 NNDGSHIVHVPSGANALSDVLLSTP 189
BLAST of FC920809 vs. ExPASy Swiss-Prot
Match: PSMD4_DICDI (26S proteasome non-ATPase regulatory subunit 4 OS=Dictyostelium discoideum GN=psmD4 PE=2 SV=1) HSP 1 Score: 194.126 bits (492), Expect = 5.634e-49 Identity = 97/177 (54.80%), Postives = 128/177 (72.32%), Query Frame = 2 Query: 116 MVLEATLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVRVLVTPTSDLGKILACMHGLEIGGELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNTMTVATLFTFLPGP 646 M LEAT++C+DNSEWMRNGD+ PSR +AQ +A NLIC +KTQ NPE+ V +M+MAGK VLVT T +L KIL+ L+I G+++ + +Q+AQLAL+HRQN Q RII FVGSP+K K+ L + ++LKKN VA+DI+NFGE E N++KLEA + VN + L T PGP Sbjct: 1 MTLEATIVCLDNSEWMRNGDFTPSRSEAQKDAVNLICASKTQSNPESAVSIMSMAGKKPEVLVTLTQELSKILSGAQELKINGKIDFSTTMQIAQLALRHRQNNHQHPRIIAFVGSPLKETKEELIQLAKRLKKNGVAVDIINFGEVTE-NSDKLEAFINDVNNNDESHLLTVPPGP 176
BLAST of FC920809 vs. ExPASy Swiss-Prot
Match: RPN10_YEAST (26S proteasome regulatory subunit RPN10 OS=Saccharomyces cerevisiae GN=RPN10 PE=1 SV=3) HSP 1 Score: 172.555 bits (436), Expect = 1.756e-42 Identity = 93/179 (51.96%), Postives = 124/179 (69.27%), Query Frame = 2 Query: 116 MVLEATLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVRVLVTPTSDLGKILACMHGLEIGGELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNTMTVAT--LFTFLPGP 646 MVLEAT++ IDNSE+ RNGD+ +RF+AQ ++ I AK NPENTVG+++ AG RVL T T++ GKILA +H +I G+L++A +Q+AQL LKHRQNK Q QRI+ FV SPI + L + + LKKN+VA+DI+NFGE ++ NTE L+ +AAVN T L T PGP Sbjct: 1 MVLEATVLVIDNSEYSRNGDFPRTRFEAQIDSVEFIFQAKRNSNPENTVGLISGAGANPRVLSTFTAEFGKILAGLHDTQIEGKLHMATALQIAQLTLKHRQNKVQHQRIVAFVCSPISDSRDELIRLAKTLKKNNVAVDIINFGEIEQ-NTELLDEFIAAVNNPQEETSHLLTVTPGP 178
BLAST of FC920809 vs. ExPASy Swiss-Prot
Match: PSMD4_MOUSE (26S proteasome non-ATPase regulatory subunit 4 OS=Mus musculus GN=Psmd4 PE=1 SV=1) HSP 1 Score: 172.555 bits (436), Expect = 1.756e-42 Identity = 89/179 (49.72%), Postives = 125/179 (69.83%), Query Frame = 2 Query: 116 MVLEATLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVRVLVTPTSDLGKILACMHGLEIGGELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNTM--TVATLFTFLPGP 646 MVLE+T++C+DNSE+MRNGD+ P+R QAQ +A N++C +KT+ NPEN VG++T+A VL T T D G+IL+ +H ++ G++ GI+VA LALKHRQ K + RII FVGSP++ +K L + ++LKK V +DI+NFGE +E NTEKL A + +N T + L T PGP Sbjct: 1 MVLESTMVCVDNSEYMRNGDFLPTRLQAQQDAVNIVCHSKTRSNPENNVGLITLAND-CEVLTTLTPDTGRILSKLHTVQPKGKITFCTGIRVAHLALKHRQGKNHKMRIIAFVGSPVEDNEKDLVKLAKRLKKEKVNVDIINFGE-EEVNTEKLTAFVNTLNGKDGTGSHLVTVPPGP 177
BLAST of FC920809 vs. ExPASy Swiss-Prot
Match: PSMD4_HUMAN (26S proteasome non-ATPase regulatory subunit 4 OS=Homo sapiens GN=PSMD4 PE=1 SV=1) HSP 1 Score: 172.555 bits (436), Expect = 1.756e-42 Identity = 89/179 (49.72%), Postives = 125/179 (69.83%), Query Frame = 2 Query: 116 MVLEATLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVRVLVTPTSDLGKILACMHGLEIGGELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNTM--TVATLFTFLPGP 646 MVLE+T++C+DNSE+MRNGD+ P+R QAQ +A N++C +KT+ NPEN VG++T+A VL T T D G+IL+ +H ++ G++ GI+VA LALKHRQ K + RII FVGSP++ +K L + ++LKK V +DI+NFGE +E NTEKL A + +N T + L T PGP Sbjct: 1 MVLESTMVCVDNSEYMRNGDFLPTRLQAQQDAVNIVCHSKTRSNPENNVGLITLAND-CEVLTTLTPDTGRILSKLHTVQPKGKITFCTGIRVAHLALKHRQGKNHKMRIIAFVGSPVEDNEKDLVKLAKRLKKEKVNVDIINFGE-EEVNTEKLTAFVNTLNGKDGTGSHLVTVPPGP 177
BLAST of FC920809 vs. ExPASy Swiss-Prot
Match: PSMD4_BOVIN (26S proteasome non-ATPase regulatory subunit 4 OS=Bos taurus GN=PSMD4 PE=2 SV=1) HSP 1 Score: 172.555 bits (436), Expect = 1.756e-42 Identity = 89/179 (49.72%), Postives = 125/179 (69.83%), Query Frame = 2 Query: 116 MVLEATLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVRVLVTPTSDLGKILACMHGLEIGGELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNTM--TVATLFTFLPGP 646 MVLE+T++C+DNSE+MRNGD+ P+R QAQ +A N++C +KT+ NPEN VG++T+A VL T T D G+IL+ +H ++ G++ GI+VA LALKHRQ K + RII FVGSP++ +K L + ++LKK V +DI+NFGE +E NTEKL A + +N T + L T PGP Sbjct: 1 MVLESTMVCVDNSEYMRNGDFLPTRLQAQQDAVNIVCHSKTRSNPENNVGLITLAND-CEVLTTLTPDTGRILSKLHTVQPKGKITFCTGIRVAHLALKHRQGKNHKMRIIAFVGSPVEDNEKDLVKLAKRLKKEKVNVDIINFGE-EEVNTEKLTAFVNTLNGKDGTGSHLVTVPPGP 177
BLAST of FC920809 vs. ExPASy Swiss-Prot
Match: RPN10_SCHPO (26S proteasome regulatory subunit rpn10 OS=Schizosaccharomyces pombe GN=rpn10 PE=1 SV=1) HSP 1 Score: 164.081 bits (414), Expect = 6.244e-40 Identity = 85/177 (48.02%), Postives = 114/177 (64.41%), Query Frame = 2 Query: 116 MVLEATLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVRVLVTPTSDLGKILACMHGLEIGGELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNTMTVATLFTFLPGP 646 MVLEAT+I IDNSEWM NGDY P+RF+AQ + ++I K NPEN G+MT+ +VL T T D GK L+ MH L + G GIQ+AQLALKHR+NK Q+QRI+ FVGSPI ++K L + +++KKN+VA+DI++ GE N L+ + A N+ L + P P Sbjct: 1 MVLEATMILIDNSEWMINGDYIPTRFEAQKDTVHMIFNQKINDNPENMCGLMTIGDNSPQVLSTLTRDYGKFLSAMHDLPVRGNAKFGDGIQIAQLALKHRENKIQRQRIVAFVGSPIVEDEKNLIRLAKRMKKNNVAIDIIHIGELQ--NESALQHFIDAANSSDSCHLVSIPPSP 175
BLAST of FC920809 vs. ExPASy Swiss-Prot
Match: PSMD4_DROME (26S proteasome non-ATPase regulatory subunit 4 OS=Drosophila melanogaster GN=Pros54 PE=1 SV=2) HSP 1 Score: 157.918 bits (398), Expect = 4.475e-38 Identity = 83/163 (50.92%), Postives = 110/163 (67.48%), Query Frame = 2 Query: 116 MVLEATLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVRVLVTPTSDLGKILACMHGLEIGGELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVN 604 MVLE+T+IC DNS++ RNGDY P+R Q + NL+C K + NPEN VG+MT++ V VL T TSD G+I + MH ++ GE+NL GI++A L LKHRQ K + RI+VFVGSPI HE+ L ++LKK V +DIV+FG D N E L A + A+N Sbjct: 1 MVLESTMICFDNSDFQRNGDYFPTRLIVQRDGINLVCLTKLRSNPENNVGLMTLSNT-VEVLATLTSDAGRIFSKMHLVQPKGEINLLTGIRIAHLVLKHRQGKNHKMRIVVFVGSPINHEEGDLVKQAKRLKKEKVNVDIVSFG-DHGNNNEILTAFINALN 161
BLAST of FC920809 vs. ExPASy Swiss-Prot
Match: PSMD4_SCHMA (26S proteasome non-ATPase regulatory subunit 4 OS=Schistosoma mansoni PE=2 SV=2) HSP 1 Score: 147.517 bits (371), Expect = 6.048e-35 Identity = 78/178 (43.82%), Postives = 117/178 (65.73%), Query Frame = 2 Query: 116 MVLEATLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVRVLVTPTSDLGKILACMHGLEIGGELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNTM--TVATLFTFLPG 643 M EAT+I +DNS++MRNGD+ P+R QAQ +A LIC +K Q NPENT+G++++A VL T T+D+ KI +H +E G + + I++A LAL+HRQ + Q+ RI+ F+GSPI ++K L + ++LKK V +DI+NFGE +E N +KL + +N T + L + PG Sbjct: 1 MSQEATIIAVDNSDYMRNGDFFPTRLQAQNDAVGLICQSKRQRNPENTIGLLSLAN--TEVLCTLTNDVSKIYNRLHLVEPKGRIIFCSSIRIAHLALRHRQLRHQKMRIVCFIGSPILEDEKELTRLAKRLKKEKVNVDIINFGE-NETNEQKLSEFIDTLNGKDGTGSHLISVAPG 175
BLAST of FC920809 vs. ExPASy Swiss-Prot
Match: PIPSL_HUMAN (Putative PIP5K1A and PSMD4-like protein OS=Homo sapiens GN=PIPSL PE=5 SV=1) HSP 1 Score: 145.591 bits (366), Expect = 2.298e-34 Identity = 80/177 (45.20%), Postives = 112/177 (63.28%), Query Frame = 2 Query: 122 LEATLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVRVLVTPTSDLGKILACMHGLEIGGELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNTM--TVATLFTFLPGP 646 L+ +DNSE+M NGD+ P+R QAQ +A N +C +KT+ NPEN VG++T+ VL T T D G+IL+ +H ++ G++ GI VA LALKHRQ + RII FVG+P++ +K L + + LKK V +DI+NFGE +E NTEKL A + +N T + L T PGP Sbjct: 488 LQMLTTSVDNSEYMGNGDFLPTRLQAQQDAVNTVCHSKTRSNPENNVGLITL-DNDCEVLTTLTPDTGRILSKLHTVQPKGKITFCMGIHVAHLALKHRQGNNHKIRIIAFVGNPVEDNEKNLVKLAKCLKKEKVNVDIINFGE-EEVNTEKLTAFVNTLNGKDGTGSHLVTVPPGP 662 The following BLAST results are available for this feature:
BLAST of FC920809 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 10
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >FC920809 ID=FC920809; Name=FC920809; organism=Citrus clementina; type=EST; length=680bpback to top |