FC920809

Overview
NameFC920809
Unique NameFC920809
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length680
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10348 contig Ccv1_Contig10348:12..692. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920809 vs. ExPASy Swiss-Prot
Match: PSMD4_ARATH (26S proteasome non-ATPase regulatory subunit 4 OS=Arabidopsis thaliana GN=MBP1 PE=1 SV=1)

HSP 1 Score: 273.863 bits (699), Expect = 2.990e-79
Identity = 133/164 (81.10%), Postives = 150/164 (91.46%), Query Frame = 2
Query:  116 MVLEATLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVRVLVTPTSDLGKILACMHGLEIGGELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGE-DDEGNTEKLEALLAAVN 604
            MVLEAT+ICIDNSEWMRNGDY+PSR QAQTEA NL+CGAKTQ NPENTVG++TMAGKGVRVL TPTSDLGKILACMHGL++GGE+NL A IQ+AQLALKHRQNK Q+QRIIVF GSPIK+EKK LE++G++LKKNSV+LDIVNFGE DDE   +KLEALL AVN
Sbjct:    1 MVLEATMICIDNSEWMRNGDYSPSRLQAQTEAVNLLCGAKTQSNPENTVGILTMAGKGVRVLTTPTSDLGKILACMHGLDVGGEINLTAAIQIAQLALKHRQNKNQRQRIIVFAGSPIKYEKKALEIVGKRLKKNSVSLDIVNFGEDDDEEKPQKLEALLTAVN 164          

HSP 2 Score: 43.1282 bits (100), Expect = 2.990e-79
Identity = 19/25 (76.00%), Postives = 22/25 (88.00%), Query Frame = 1
Query:  604 HNDSSHLVHVPPWSNALSDVLLSTP 678
            +ND SH+VHVP  +NALSDVLLSTP
Sbjct:  165 NNDGSHIVHVPSGANALSDVLLSTP 189          
BLAST of FC920809 vs. ExPASy Swiss-Prot
Match: PSMD4_DICDI (26S proteasome non-ATPase regulatory subunit 4 OS=Dictyostelium discoideum GN=psmD4 PE=2 SV=1)

HSP 1 Score: 194.126 bits (492), Expect = 5.634e-49
Identity = 97/177 (54.80%), Postives = 128/177 (72.32%), Query Frame = 2
Query:  116 MVLEATLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVRVLVTPTSDLGKILACMHGLEIGGELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNTMTVATLFTFLPGP 646
            M LEAT++C+DNSEWMRNGD+ PSR +AQ +A NLIC +KTQ NPE+ V +M+MAGK   VLVT T +L KIL+    L+I G+++ +  +Q+AQLAL+HRQN  Q  RII FVGSP+K  K+ L  + ++LKKN VA+DI+NFGE  E N++KLEA +  VN    + L T  PGP
Sbjct:    1 MTLEATIVCLDNSEWMRNGDFTPSRSEAQKDAVNLICASKTQSNPESAVSIMSMAGKKPEVLVTLTQELSKILSGAQELKINGKIDFSTTMQIAQLALRHRQNNHQHPRIIAFVGSPLKETKEELIQLAKRLKKNGVAVDIINFGEVTE-NSDKLEAFINDVNNNDESHLLTVPPGP 176          
BLAST of FC920809 vs. ExPASy Swiss-Prot
Match: RPN10_YEAST (26S proteasome regulatory subunit RPN10 OS=Saccharomyces cerevisiae GN=RPN10 PE=1 SV=3)

HSP 1 Score: 172.555 bits (436), Expect = 1.756e-42
Identity = 93/179 (51.96%), Postives = 124/179 (69.27%), Query Frame = 2
Query:  116 MVLEATLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVRVLVTPTSDLGKILACMHGLEIGGELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNTMTVAT--LFTFLPGP 646
            MVLEAT++ IDNSE+ RNGD+  +RF+AQ ++   I  AK   NPENTVG+++ AG   RVL T T++ GKILA +H  +I G+L++A  +Q+AQL LKHRQNK Q QRI+ FV SPI   +  L  + + LKKN+VA+DI+NFGE ++ NTE L+  +AAVN     T  L T  PGP
Sbjct:    1 MVLEATVLVIDNSEYSRNGDFPRTRFEAQIDSVEFIFQAKRNSNPENTVGLISGAGANPRVLSTFTAEFGKILAGLHDTQIEGKLHMATALQIAQLTLKHRQNKVQHQRIVAFVCSPISDSRDELIRLAKTLKKNNVAVDIINFGEIEQ-NTELLDEFIAAVNNPQEETSHLLTVTPGP 178          
BLAST of FC920809 vs. ExPASy Swiss-Prot
Match: PSMD4_MOUSE (26S proteasome non-ATPase regulatory subunit 4 OS=Mus musculus GN=Psmd4 PE=1 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 1.756e-42
Identity = 89/179 (49.72%), Postives = 125/179 (69.83%), Query Frame = 2
Query:  116 MVLEATLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVRVLVTPTSDLGKILACMHGLEIGGELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNTM--TVATLFTFLPGP 646
            MVLE+T++C+DNSE+MRNGD+ P+R QAQ +A N++C +KT+ NPEN VG++T+A     VL T T D G+IL+ +H ++  G++    GI+VA LALKHRQ K  + RII FVGSP++  +K L  + ++LKK  V +DI+NFGE +E NTEKL A +  +N    T + L T  PGP
Sbjct:    1 MVLESTMVCVDNSEYMRNGDFLPTRLQAQQDAVNIVCHSKTRSNPENNVGLITLAND-CEVLTTLTPDTGRILSKLHTVQPKGKITFCTGIRVAHLALKHRQGKNHKMRIIAFVGSPVEDNEKDLVKLAKRLKKEKVNVDIINFGE-EEVNTEKLTAFVNTLNGKDGTGSHLVTVPPGP 177          
BLAST of FC920809 vs. ExPASy Swiss-Prot
Match: PSMD4_HUMAN (26S proteasome non-ATPase regulatory subunit 4 OS=Homo sapiens GN=PSMD4 PE=1 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 1.756e-42
Identity = 89/179 (49.72%), Postives = 125/179 (69.83%), Query Frame = 2
Query:  116 MVLEATLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVRVLVTPTSDLGKILACMHGLEIGGELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNTM--TVATLFTFLPGP 646
            MVLE+T++C+DNSE+MRNGD+ P+R QAQ +A N++C +KT+ NPEN VG++T+A     VL T T D G+IL+ +H ++  G++    GI+VA LALKHRQ K  + RII FVGSP++  +K L  + ++LKK  V +DI+NFGE +E NTEKL A +  +N    T + L T  PGP
Sbjct:    1 MVLESTMVCVDNSEYMRNGDFLPTRLQAQQDAVNIVCHSKTRSNPENNVGLITLAND-CEVLTTLTPDTGRILSKLHTVQPKGKITFCTGIRVAHLALKHRQGKNHKMRIIAFVGSPVEDNEKDLVKLAKRLKKEKVNVDIINFGE-EEVNTEKLTAFVNTLNGKDGTGSHLVTVPPGP 177          
BLAST of FC920809 vs. ExPASy Swiss-Prot
Match: PSMD4_BOVIN (26S proteasome non-ATPase regulatory subunit 4 OS=Bos taurus GN=PSMD4 PE=2 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 1.756e-42
Identity = 89/179 (49.72%), Postives = 125/179 (69.83%), Query Frame = 2
Query:  116 MVLEATLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVRVLVTPTSDLGKILACMHGLEIGGELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNTM--TVATLFTFLPGP 646
            MVLE+T++C+DNSE+MRNGD+ P+R QAQ +A N++C +KT+ NPEN VG++T+A     VL T T D G+IL+ +H ++  G++    GI+VA LALKHRQ K  + RII FVGSP++  +K L  + ++LKK  V +DI+NFGE +E NTEKL A +  +N    T + L T  PGP
Sbjct:    1 MVLESTMVCVDNSEYMRNGDFLPTRLQAQQDAVNIVCHSKTRSNPENNVGLITLAND-CEVLTTLTPDTGRILSKLHTVQPKGKITFCTGIRVAHLALKHRQGKNHKMRIIAFVGSPVEDNEKDLVKLAKRLKKEKVNVDIINFGE-EEVNTEKLTAFVNTLNGKDGTGSHLVTVPPGP 177          
BLAST of FC920809 vs. ExPASy Swiss-Prot
Match: RPN10_SCHPO (26S proteasome regulatory subunit rpn10 OS=Schizosaccharomyces pombe GN=rpn10 PE=1 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 6.244e-40
Identity = 85/177 (48.02%), Postives = 114/177 (64.41%), Query Frame = 2
Query:  116 MVLEATLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVRVLVTPTSDLGKILACMHGLEIGGELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNTMTVATLFTFLPGP 646
            MVLEAT+I IDNSEWM NGDY P+RF+AQ +  ++I   K   NPEN  G+MT+     +VL T T D GK L+ MH L + G      GIQ+AQLALKHR+NK Q+QRI+ FVGSPI  ++K L  + +++KKN+VA+DI++ GE    N   L+  + A N+     L +  P P
Sbjct:    1 MVLEATMILIDNSEWMINGDYIPTRFEAQKDTVHMIFNQKINDNPENMCGLMTIGDNSPQVLSTLTRDYGKFLSAMHDLPVRGNAKFGDGIQIAQLALKHRENKIQRQRIVAFVGSPIVEDEKNLIRLAKRMKKNNVAIDIIHIGELQ--NESALQHFIDAANSSDSCHLVSIPPSP 175          
BLAST of FC920809 vs. ExPASy Swiss-Prot
Match: PSMD4_DROME (26S proteasome non-ATPase regulatory subunit 4 OS=Drosophila melanogaster GN=Pros54 PE=1 SV=2)

HSP 1 Score: 157.918 bits (398), Expect = 4.475e-38
Identity = 83/163 (50.92%), Postives = 110/163 (67.48%), Query Frame = 2
Query:  116 MVLEATLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVRVLVTPTSDLGKILACMHGLEIGGELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVN 604
            MVLE+T+IC DNS++ RNGDY P+R   Q +  NL+C  K + NPEN VG+MT++   V VL T TSD G+I + MH ++  GE+NL  GI++A L LKHRQ K  + RI+VFVGSPI HE+  L    ++LKK  V +DIV+FG D   N E L A + A+N
Sbjct:    1 MVLESTMICFDNSDFQRNGDYFPTRLIVQRDGINLVCLTKLRSNPENNVGLMTLSNT-VEVLATLTSDAGRIFSKMHLVQPKGEINLLTGIRIAHLVLKHRQGKNHKMRIVVFVGSPINHEEGDLVKQAKRLKKEKVNVDIVSFG-DHGNNNEILTAFINALN 161          
BLAST of FC920809 vs. ExPASy Swiss-Prot
Match: PSMD4_SCHMA (26S proteasome non-ATPase regulatory subunit 4 OS=Schistosoma mansoni PE=2 SV=2)

HSP 1 Score: 147.517 bits (371), Expect = 6.048e-35
Identity = 78/178 (43.82%), Postives = 117/178 (65.73%), Query Frame = 2
Query:  116 MVLEATLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVRVLVTPTSDLGKILACMHGLEIGGELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNTM--TVATLFTFLPG 643
            M  EAT+I +DNS++MRNGD+ P+R QAQ +A  LIC +K Q NPENT+G++++A     VL T T+D+ KI   +H +E  G +   + I++A LAL+HRQ + Q+ RI+ F+GSPI  ++K L  + ++LKK  V +DI+NFGE +E N +KL   +  +N    T + L +  PG
Sbjct:    1 MSQEATIIAVDNSDYMRNGDFFPTRLQAQNDAVGLICQSKRQRNPENTIGLLSLAN--TEVLCTLTNDVSKIYNRLHLVEPKGRIIFCSSIRIAHLALRHRQLRHQKMRIVCFIGSPILEDEKELTRLAKRLKKEKVNVDIINFGE-NETNEQKLSEFIDTLNGKDGTGSHLISVAPG 175          
BLAST of FC920809 vs. ExPASy Swiss-Prot
Match: PIPSL_HUMAN (Putative PIP5K1A and PSMD4-like protein OS=Homo sapiens GN=PIPSL PE=5 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 2.298e-34
Identity = 80/177 (45.20%), Postives = 112/177 (63.28%), Query Frame = 2
Query:  122 LEATLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVRVLVTPTSDLGKILACMHGLEIGGELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNTM--TVATLFTFLPGP 646
            L+     +DNSE+M NGD+ P+R QAQ +A N +C +KT+ NPEN VG++T+      VL T T D G+IL+ +H ++  G++    GI VA LALKHRQ    + RII FVG+P++  +K L  + + LKK  V +DI+NFGE +E NTEKL A +  +N    T + L T  PGP
Sbjct:  488 LQMLTTSVDNSEYMGNGDFLPTRLQAQQDAVNTVCHSKTRSNPENNVGLITL-DNDCEVLTTLTPDTGRILSKLHTVQPKGKITFCMGIHVAHLALKHRQGNNHKIRIIAFVGNPVEDNEKNLVKLAKCLKKEKVNVDIINFGE-EEVNTEKLTAFVNTLNGKDGTGSHLVTVPPGP 662          
The following BLAST results are available for this feature:
BLAST of FC920809 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
PSMD4_ARATH2.990e-7981.1026S proteasome non-ATPase regulatory subunit 4 OS=... [more]
PSMD4_DICDI5.634e-4954.8026S proteasome non-ATPase regulatory subunit 4 OS=... [more]
RPN10_YEAST1.756e-4251.9626S proteasome regulatory subunit RPN10 OS=Sacchar... [more]
PSMD4_MOUSE1.756e-4249.7226S proteasome non-ATPase regulatory subunit 4 OS=... [more]
PSMD4_HUMAN1.756e-4249.7226S proteasome non-ATPase regulatory subunit 4 OS=... [more]
PSMD4_BOVIN1.756e-4249.7226S proteasome non-ATPase regulatory subunit 4 OS=... [more]
RPN10_SCHPO6.244e-4048.0226S proteasome regulatory subunit rpn10 OS=Schizos... [more]
PSMD4_DROME4.475e-3850.9226S proteasome non-ATPase regulatory subunit 4 OS=... [more]
PSMD4_SCHMA6.048e-3543.8226S proteasome non-ATPase regulatory subunit 4 OS=... [more]
PIPSL_HUMAN2.298e-3445.20Putative PIP5K1A and PSMD4-like protein OS=Homo sa... [more]
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Properties
Property NameValue
Genbank descriptionC32013C09EF RVDevelop1 Citrus clementina cDNA clone C32013C09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920809 ID=FC920809; Name=FC920809; organism=Citrus clementina; type=EST; length=680bp
GATTTTATTTGAGAAGCTTATTATTTCTTACTTGAGTCTTCTTTAACGAC
GCTGCTCTCACTCTTTCCCGAGCATTGGCATTTGTTCTGTTTCTGATCTC
AAAGAGTAGATAGCCATGGTTCTCGAGGCAACGTTGATCTGTATTGATAA
TTCTGAGTGGATGCGTAACGGCGATTACGCTCCTAGTAGATTCCAAGCTC
AAACTGAAGCTGCTAATCTCATTTGCGGAGCCAAAACTCAGTTAAATCCT
GAGAATACCGTAGGTGTTATGACAATGGCAGGGAAAGGGGTTCGTGTTTT
GGTCACTCCTACTAGTGATCTTGGCAAGATCTTGGCTTGCATGCACGGTT
TAGAAATAGGCGGTGAGTTGAATCTTGCTGCTGGGATCCAGGTGGCTCAA
TTGGCTCTAAAGCATCGCCAGAACAAAAAGCAGCAACAAAGGATTATTGT
CTTCGTTGGAAGTCCCATCAAGCATGAAAAGAAAGTGCTGGAGATGATTG
GCAGGAAGTTGAAAAAGAATAGTGTAGCACTTGACATTGTCAACTTTGGT
GAAGACGATGAGGGGAATACGGAGAAGCTTGAAGCACTTCTTGCTGCTGT
GAACACAATGACAGTAGCCACCTTGTTCACGTTCCTCCCTGGTCCAATGC
CCTTTCTGATGTGCTTCTTAGTACGCCTAT
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