FC920810

Overview
NameFC920810
Unique NameFC920810
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length700
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9858 contig Ccv1_Contig9858:5..704. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920810 vs. ExPASy Swiss-Prot
Match: CHIB_ARATH (Basic endochitinase B OS=Arabidopsis thaliana GN=CHI-B PE=1 SV=3)

HSP 1 Score: 248.44 bits (633), Expect = 2.673e-65
Identity = 112/179 (62.57%), Postives = 135/179 (75.42%), Query Frame = 2
Query:  170 GELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGDETTGGWPDAPGGEYAWGYCYIRQVSRPASDYCYRYC--PCPLPGQYYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWK 700
            G+L  IIS   F+D+L +RND  CPARGFYTY+AFI AAK+FP FG +G+   RK+E+AAFF QT  ETTGGW  AP G Y+WGYC+ +Q   PASDYC      PC    +YYGRGP+QL+WN NY  CG A+GVDLLNNPDL+A D V++FK+AIWFWMTAQPPKPSCH VI  +W+
Sbjct:   84 GDLSGIISSSQFDDMLKHRNDAACPARGFYTYNAFITAAKSFPGFGTTGDTATRKKEVAAFFGQTSHETTGGWATAPDGPYSWGYCF-KQEQNPASDYCEPSATWPCASGKRYYGRGPMQLSWNYNYGLCGRAIGVDLLNNPDLVANDAVIAFKAAIWFWMTAQPPKPSCHAVIAGQWQ 261          
BLAST of FC920810 vs. ExPASy Swiss-Prot
Match: CHI2_TOBAC (Endochitinase B OS=Nicotiana tabacum GN=CHN50 PE=1 SV=1)

HSP 1 Score: 246.128 bits (627), Expect = 1.327e-64
Identity = 119/199 (59.80%), Postives = 143/199 (71.86%), Query Frame = 2
Query:  116 CGSGVVCGERDTGHGTD--GGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGDETTGGWPDAPGGEYAWGYCYIRQVSRPASDYC--YRYCPCPLPGQYYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWK 700
            CG G  C  +  G  T   GG+LG IIS  MF+ +L +RND  C  +GFY+Y+AFI AA++FP FG SG+ T RKREIAAFFAQT  ETTGGW  AP G YAWGYC++R+   P  DYC      PC    +Y+GRGPIQ++ N NY  CG A+GVDLLNNPDL+ATDPV+SFKSA+WFWMT Q PKPSCH+VII  W+
Sbjct:   54 CGPGN-CQSQCPGGPTPPGGGDLGSIISSSMFDQMLKHRNDNACQGKGFYSYNAFINAARSFPGFGTSGDTTARKREIAAFFAQTSHETTGGWATAPDGPYAWGYCWLREQGSP-GDYCTPSGQWPCAPGRKYFGRGPIQISHNYNYGPCGRAIGVDLLNNPDLVATDPVISFKSALWFWMTPQSPKPSCHDVIIGRWQ 250          
BLAST of FC920810 vs. ExPASy Swiss-Prot
Match: CHI2_BRANA (Endochitinase CH25 OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 246.128 bits (627), Expect = 1.327e-64
Identity = 110/179 (61.45%), Postives = 135/179 (75.42%), Query Frame = 2
Query:  170 GELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGDETTGGWPDAPGGEYAWGYCYIRQVSRPASDYCYRYC--PCPLPGQYYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWK 700
            G+L  IISR  F+D+L +RND  CPARGFYTYDAFI AAK+FP FG +G+   RK+EIAAFF QT  ETTGGW  AP G Y+WGYC+ +Q   P+S+YC      PC     YYGRGP+QL+WN NY +CG A+G DLLNNPDL++ DPV++FK+AIWFWMT Q PKPSCH VI+ +W+
Sbjct:   69 GDLSGIISRSQFDDMLKHRNDNACPARGFYTYDAFINAAKSFPGFGTTGDTATRKKEIAAFFGQTSHETTGGWATAPDGPYSWGYCF-KQEQNPSSNYCSPSAEWPCASGKSYYGRGPMQLSWNYNYGQCGRAIGSDLLNNPDLVSNDPVIAFKAAIWFWMTPQSPKPSCHAVIVGQWQ 246          
BLAST of FC920810 vs. ExPASy Swiss-Prot
Match: CHI1_TOBAC (Endochitinase A OS=Nicotiana tabacum GN=CHN48 PE=1 SV=2)

HSP 1 Score: 245.358 bits (625), Expect = 2.263e-64
Identity = 113/180 (62.78%), Postives = 136/180 (75.56%), Query Frame = 2
Query:  167 GGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGDETTGGWPDAPGGEYAWGYCYIRQVSRPASDYC--YRYCPCPLPGQYYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWK 700
            GG+LG IIS  MF+ +L +RND  C  +GFY+Y+AFI AA++FP FG SG+ T RKREIAAFFAQT  ETTGGW  AP G YAWGYC++R+   P  DYC      PC    +Y+GRGPIQ++ N NY  CG A+GVDLLNNPDL+ATDPV+SFKSA+WFWMT Q PKPSCH+VII  W+
Sbjct:   77 GGDLGSIISSSMFDQMLKHRNDNACQGKGFYSYNAFINAARSFPGFGTSGDTTARKREIAAFFAQTSHETTGGWATAPDGPYAWGYCWLREQGSP-GDYCTPSGQWPCAPGRKYFGRGPIQISHNYNYGPCGRAIGVDLLNNPDLVATDPVISFKSALWFWMTPQSPKPSCHDVIIGRWQ 255          
BLAST of FC920810 vs. ExPASy Swiss-Prot
Match: CHI1_THECC (Endochitinase 1 OS=Theobroma cacao GN=CHIA1 PE=2 SV=1)

HSP 1 Score: 244.588 bits (623), Expect = 3.860e-64
Identity = 119/193 (61.66%), Postives = 141/193 (73.06%), Query Frame = 2
Query:  134 CGERDTGHGTDGGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGDETTGG--WPDAPGGEYAWGYCYIRQVSRPASDYCY---RYCPCPLPGQYYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEW 697
            C  + +G G D G L  +I+RE F+ +L +RND  CPARGFYTYDAFI AAK+FPAF  +G++  RKRE+AAF AQT  ETTGG  W  AP G Y WGYCY R+++   +DYC     Y PC    QY+GRGP+QLTWN NY +CG A+GVDLLNNPDLLATDP +SFKSA WFWMT Q PKPSCH+VII  W
Sbjct:   58 CQSQCSGSGGDTGGLDSLITRERFDQMLLHRNDGGCPARGFYTYDAFIAAAKSFPAFATTGDDATRKREVAAFLAQTSHETTGGAGWA-APDGPYTWGYCYNRELN--PADYCQWDPNY-PCAPGKQYFGRGPMQLTWNYNYGQCGRAIGVDLLNNPDLLATDPTISFKSAFWFWMTPQSPKPSCHDVIIGAW 246          
BLAST of FC920810 vs. ExPASy Swiss-Prot
Match: CHIT_PHAVU (Endochitinase OS=Phaseolus vulgaris PE=1 SV=1)

HSP 1 Score: 243.432 bits (620), Expect = 8.600e-64
Identity = 116/196 (59.18%), Postives = 138/196 (70.41%), Query Frame = 2
Query:  116 CGSGVVCGERDTGHGTDGGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGDETTGGWPDAPGGEYAWGYCYIRQVSRPASDYCYR--YCPCPLPGQYYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEW 697
            CG G  C  +  G      +L  +ISR  F+ +L +RND  CPA+GFYTYDAFI AAKA+P+FGN+G+   RKREIAAF  QT  ETTGGW  AP G YAWGYC++R+  R  S YC      PC    QYYGRGPIQ++WN NY +CG A+GVDLLN PDL+ATD V+SFKSA+WFWMTAQ PKPS H+VI   W
Sbjct:   58 CGPG--CQSQCGGPSPAPTDLSALISRSTFDQMLKHRNDGACPAKGFYTYDAFIAAAKAYPSFGNTGDTATRKREIAAFLGQTSHETTGGWATAPDGPYAWGYCFVRE--RNPSTYCSATPQFPCAPGQQYYGRGPIQISWNYNYGQCGRAIGVDLLNKPDLVATDSVISFKSALWFWMTAQSPKPSSHDVITSRW 249          
BLAST of FC920810 vs. ExPASy Swiss-Prot
Match: CHIB_VITVI (Basic endochitinase OS=Vitis vinifera GN=CHIT1B PE=2 SV=1)

HSP 1 Score: 243.432 bits (620), Expect = 8.600e-64
Identity = 113/197 (57.36%), Postives = 140/197 (71.07%), Query Frame = 2
Query:  116 CGSGV-VCGERDTGHGTDGGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGDETTGGWPDAPGGEYAWGYCYIRQVSRPASDYCY--RYCPCPLPGQYYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEW 697
            CG+    CG       +  G++G++I+R MF D+L +RN+  CP +GFYTYDAFI AAKAFP FG +G+ T RKREIAAF AQT  ETTGGW  AP G YAWGYCY+R+   P + YC      PC    +YYGRGPIQ+++N NY + G+A+GVDL+NNPDL+ATD V+SFK+A WFWMT Q PKPSCH VI   W
Sbjct:   44 CGNTADYCGSGCQSQCSSTGDIGQLITRSMFNDMLKHRNEGSCPGKGFYTYDAFIAAAKAFPGFGTTGDTTTRKREIAAFLAQTSHETTGGWASAPDGPYAWGYCYLREQGSPGA-YCVPSAQWPCAAGRKYYGRGPIQISYNYNYGQAGKAIGVDLVNNPDLVATDAVISFKTAFWFWMTPQSPKPSCHNVITGGW 239          
BLAST of FC920810 vs. ExPASy Swiss-Prot
Match: CHI4_SOLTU (Endochitinase 4 (Fragment) OS=Solanum tuberosum GN=CHTB4 PE=2 SV=1)

HSP 1 Score: 241.891 bits (616), Expect = 2.502e-63
Identity = 115/198 (58.08%), Postives = 140/198 (70.71%), Query Frame = 2
Query:  116 CGSGVVCGERDTGHGTDGGELGKIISREMFEDLLPYRNDVRCPARG-FYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGDETTGGWPDAPGGEYAWGYCYIRQVSRPASDYCYR--YCPCPLPGQYYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWK 700
            C SG        G G  GG++G +IS  MF+ +L +RND  C  +  FY+Y+AFI AA++F  FG +G+ T RKREIAAFFAQT  ETTGGWP AP G YAWGYC++R+   P  DYC      PC    +Y+GRGPIQ++ N NY  CG A+GVDLLNNPDL+ATDPV+SFKSAIWFWMT Q PKPSCH+VII  W+
Sbjct:   58 CPSGPSPKPPTPGPGPSGGDIGSVISNSMFDQMLKHRNDNACQGKNNFYSYNAFINAARSFGGFGTTGDTTARKREIAAFFAQTSHETTGGWPTAPDGPYAWGYCFLREQGSPG-DYCTPSGQWPCAPGRKYFGRGPIQISHNYNYGPCGRAIGVDLLNNPDLVATDPVISFKSAIWFWMTPQSPKPSCHDVIIGRWQ 254          
BLAST of FC920810 vs. ExPASy Swiss-Prot
Match: CHI5_PHAVU (Endochitinase CH5B OS=Phaseolus vulgaris PE=3 SV=1)

HSP 1 Score: 241.506 bits (615), Expect = 3.268e-63
Identity = 117/201 (58.21%), Postives = 139/201 (69.15%), Query Frame = 2
Query:  116 CGS-----GVVCGERDTGHGTDGGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGDETTGGWPDAPGGEYAWGYCYIRQVSRPASDYCYR--YCPCPLPGQYYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEW 697
            CGS     G  C  +  G      +L  +ISR  F+ +L +RND  CPA+GFYTYDAFI AAKA+P+FGN+G+   RKREIAAF  QT  ETTGGW  AP G YAWGYC++R+  R  S YC      PC    QYYGRGPIQ++WN NY +CG A+GVDLLN PDL+ATD V+SFKSA+WFWMTAQ PKPS H+VI   W
Sbjct:   50 CGSTTDYCGKDCQSQCGGPSPAPTDLSALISRSTFDQVLKHRNDGACPAKGFYTYDAFIAAAKAYPSFGNTGDTATRKREIAAFLGQTSHETTGGWATAPDGPYAWGYCFVRE--RNPSAYCSATPQFPCAPGQQYYGRGPIQISWNYNYGQCGRAIGVDLLNKPDLVATDSVISFKSALWFWMTAQSPKPSSHDVITSRW 248          
BLAST of FC920810 vs. ExPASy Swiss-Prot
Match: CHI2_PEA (Endochitinase A2 OS=Pisum sativum GN=CHI2 PE=1 SV=2)

HSP 1 Score: 241.121 bits (614), Expect = 4.268e-63
Identity = 113/200 (56.50%), Postives = 141/200 (70.50%), Query Frame = 2
Query:  104 SAQNCGSGVVCGERDTGHGTDGGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGDETTGGWPDAPGGEYAWGYCYIRQVSRPASDYCYRYC--PCPLPGQYYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEW 697
            +++ CG G  C  + +G  + GG L  +IS + F ++L +RND  C  + FYTYDAF+ AAKAFP F N G+   +KREIAAF  QT  ETTGGWP AP G YAWGYC++R+ +   S YC      PC    QYYGRGPIQ++WN NY +CG A+GVDLLNNPDL+ATDPV+SFK+A+WFWMT Q PKPSCH+VI   W
Sbjct:   47 TSEYCGDG--CQSQCSG-SSGGGTLSSLISGDTFNNMLKHRNDNACQGKPFYTYDAFLSAAKAFPNFANKGDTATKKREIAAFLGQTSHETTGGWPTAPDGPYAWGYCFLREQN--PSTYCQASSEFPCASGKQYYGRGPIQISWNYNYGQCGRAIGVDLLNNPDLVATDPVISFKTALWFWMTPQSPKPSCHDVITGGW 241          
The following BLAST results are available for this feature:
BLAST of FC920810 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
CHIB_ARATH2.673e-6562.57Basic endochitinase B OS=Arabidopsis thaliana GN=C... [more]
CHI2_TOBAC1.327e-6459.80Endochitinase B OS=Nicotiana tabacum GN=CHN50 PE=1... [more]
CHI2_BRANA1.327e-6461.45Endochitinase CH25 OS=Brassica napus PE=2 SV=1[more]
CHI1_TOBAC2.263e-6462.78Endochitinase A OS=Nicotiana tabacum GN=CHN48 PE=1... [more]
CHI1_THECC3.860e-6461.66Endochitinase 1 OS=Theobroma cacao GN=CHIA1 PE=2 S... [more]
CHIT_PHAVU8.600e-6459.18Endochitinase OS=Phaseolus vulgaris PE=1 SV=1[more]
CHIB_VITVI8.600e-6457.36Basic endochitinase OS=Vitis vinifera GN=CHIT1B PE... [more]
CHI4_SOLTU2.502e-6358.08Endochitinase 4 (Fragment) OS=Solanum tuberosum GN... [more]
CHI5_PHAVU3.268e-6358.21Endochitinase CH5B OS=Phaseolus vulgaris PE=3 SV=1[more]
CHI2_PEA4.268e-6356.50Endochitinase A2 OS=Pisum sativum GN=CHI2 PE=1 SV=... [more]

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Properties
Property NameValue
Genbank descriptionC32013C11EF RVDevelop1 Citrus clementina cDNA clone C32013C11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920810 ID=FC920810; Name=FC920810; organism=Citrus clementina; type=EST; length=700bp
GACACAAGTAAAGGATAATTTCTATCATAACTCTTGCTTTCAAATGAGGC
TCATTGGGTCCTTACTAATTTTCTCTCTAGTTTTATCTTTTGTACTAGGA
GGTTCAGCACAGAATTGTGGAAGCGGCGTTGTGTGCGGTGAACGTGATAC
TGGCCACGGGACGGATGGCGGTGAACTGGGCAAGATCATCTCAAGGGAGA
TGTTTGAAGACTTGCTTCCGTATAGAAATGATGTACGATGCCCTGCCAGA
GGCTTCTACACTTACGATGCTTTTATAGAGGCAGCCAAAGCTTTTCCAGC
CTTTGGTAACTCTGGAAATGAAACCATGCGTAAAAGAGAAATTGCTGCCT
TTTTTGCCCAAACTGGCGATGAAACTACTGGGGGATGGCCCGATGCACCT
GGTGGAGAATATGCTTGGGGATATTGCTATATTAGGCAAGTTAGCCGCCC
TGCGTCCGACTACTGTTATCGTTACTGTCCATGTCCTTTGCCAGGGCAAT
ACTATGGCCGAGGTCCAATTCAACTCACTTGGAATTGCAATTACTTAAGG
TGCGGAGAAGCCTTGGGGGTGGACTTGTTGAACAATCCAGACCTTCTTGC
CACTGATCCAGTACTATCATTCAAGTCAGCAATCTGGTTCTGGATGACTG
CACAGCCACCCAAGCCATCGTGCCACGAAGTCATTATCGACGAATGGAAA
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