FC920815

Overview
NameFC920815
Unique NameFC920815
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length692
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10680 contig Ccv1_Contig10680:104..809. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920815 vs. ExPASy Swiss-Prot
Match: PER12_ARATH (Peroxidase 12 OS=Arabidopsis thaliana GN=PER12 PE=1 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 3.524e-56
Identity = 74/129 (57.36%), Postives = 97/129 (75.19%), Query Frame = 1
Query:  283 VLEGSTS---EQNARPNLSLRKEALKFVDDLRARVHKECGRVVSCADILALAARDSVALSGGPNYDLPLGRRDSKTFA----TVVNLPSPFSNTTVILNDFREKTFNARETVALSGGHTVGLAHCPAFT 648
            +L GS S   EQ++ PNL+LR++A   +++LRA V K+CG+VVSC+DILALAARDSV LSGGP+Y +PLGRRDS  FA    T+ NLP PF N + ++ DF  +  N  + VALSGGHT+G+AHCP+FT
Sbjct:   96 LLAGSASGPGEQSSIPNLTLRQQAFVVINNLRALVQKKCGQVVSCSDILALAARDSVVLSGGPDYAVPLGRRDSLAFASQETTLNNLPPPFFNASQLIADFANRNLNITDLVALSGGHTIGIAHCPSFT 224          

HSP 2 Score: 93.2041 bits (230), Expect = 3.524e-56
Identity = 36/57 (63.16%), Postives = 49/57 (85.96%), Query Frame = 2
Query:  113 PVAKGLSWTFYDQSCPKLESIVRKQIQNALKKDIGLAAGLIRIHFHDCFVQGCDGSV 283
            P+ KGLSW FY ++CPK+E+I+RK+++   K+DIGLAA ++RIHFHDCFVQGC+ SV
Sbjct:   39 PIVKGLSWNFYQKACPKVENIIRKELKKVFKRDIGLAAAILRIHFHDCFVQGCEASV 95          
BLAST of FC920815 vs. ExPASy Swiss-Prot
Match: PER1_SORBI (Cationic peroxidase SPC4 (Fragment) OS=Sorghum bicolor PE=1 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 2.594e-47
Identity = 62/121 (51.24%), Postives = 83/121 (68.60%), Query Frame = 1
Query:  283 VLEGSTS---EQNARPNLSLRKEALKFVDDLRARVHKECG-RVVSCADILALAARDSVALSGGPNYDLPLGRRDSKTFAT----VVNLPSPFSNTTVILNDFREKTFNARETVALSGGHTV 621
            +L+GS +   EQ A PNL+LR  A K ++D+  R+HKECG  VVSC+D+LALAARDSV +SGGP+Y +PLGRRDS +FAT    +  LP P +    +L    +   +A + VALSGGHT+
Sbjct:   93 LLDGSATGPGEQQAPPNLTLRPTAFKAINDIHDRLHKECGGTVVSCSDVLALAARDSVVVSGGPSYKVPLGRRDSASFATQQDVLSGLPPPTAAVPALLAVLSKINLDATDLVALSGGHTI 213          

HSP 2 Score: 96.6709 bits (239), Expect = 2.594e-47
Identity = 41/61 (67.21%), Postives = 54/61 (88.52%), Query Frame = 2
Query:  101 AQKPPVAKGLSWTFYDQSCPKLESIVRKQIQNALKKDIGLAAGLIRIHFHDCFVQGCDGSV 283
            A++PP+A GLS+ FY +SCPK ESIVR  +Q+A+++D+GLAAGL+R+HFHDCFVQGCD SV
Sbjct:   32 ARQPPLAPGLSFDFYKRSCPKAESIVRSFVQDAVRRDVGLAAGLLRLHFHDCFVQGCDASV 92          
BLAST of FC920815 vs. ExPASy Swiss-Prot
Match: PER27_ARATH (Peroxidase 27 OS=Arabidopsis thaliana GN=PER27 PE=1 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 4.064e-38
Identity = 56/116 (48.28%), Postives = 77/116 (66.38%), Query Frame = 1
Query:  304 EQNARPNLSLRKEALKFVDDLRARVHKECGRVVSCADILALAARDSVALSGGPNYDLPLGRRDSKTF-ATVVNLPSPFSNTTVILNDFREKTFNARETVALSGGHTVGLAHCPAFT 648
            E++A PNLSLR      +DD +A + K C  +VSC+DILAL ARD++    GP++++  GRRD +      VNLPSPF N T +++DFR K  N ++ V LSGGHT+G+ HCP  T
Sbjct:   87 EKSAVPNLSLR--GFGIIDDSKAALEKVCPGIVSCSDILALVARDAMVALEGPSWEVETGRRDGRVSNINEVNLPSPFDNITKLISDFRSKGLNEKDLVILSGGHTIGMGHCPLLT 200          

HSP 2 Score: 65.4698 bits (158), Expect = 4.064e-38
Identity = 29/55 (52.73%), Postives = 41/55 (74.55%), Query Frame = 2
Query:  119 AKGLSWTFYDQSCPKLESIVRKQIQNALKKDIGLAAGLIRIHFHDCFVQGCDGSV 283
            ++GL   FY ++CP+LE IV+K + +A+ K   L A L+R+ FHDCFV+GCDGSV
Sbjct:   23 SQGLKVGFYSKTCPQLEGIVKKVVFDAMNKAPTLGAPLLRMFFHDCFVRGCDGSV 77          
BLAST of FC920815 vs. ExPASy Swiss-Prot
Match: PER47_ARATH (Peroxidase 47 OS=Arabidopsis thaliana GN=PER47 PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 5.297e-38
Identity = 53/119 (44.54%), Postives = 78/119 (65.55%), Query Frame = 1
Query:  295 STSEQNARPNLSLRKEALKFVDDLRARVHKECGRVVSCADILALAARDSVALSGGPNYDLPLGRRDSK--TFATVVNLPSPFSNTTVILNDFREKTFNARETVALSGGHTVGLAHCPAF 645
            +T+E+++  NLSLR    + +DD + ++   C  VVSCADI+A+AARD+V  +GGP YD+P GR D K        NLPSPF N + ++  F ++ F  ++ VALSG HT+G+A C +F
Sbjct:   85 NTAEKDSPANLSLR--GYEIIDDAKEKIENRCPGVVSCADIVAMAARDAVFWAGGPYYDIPKGRFDGKRSKIEDTRNLPSPFLNASQLIQTFGQRGFTPQDVVALSGAHTLGVARCSSF 201          

HSP 2 Score: 72.7886 bits (177), Expect = 5.297e-38
Identity = 32/55 (58.18%), Postives = 41/55 (74.55%), Query Frame = 2
Query:  119 AKGLSWTFYDQSCPKLESIVRKQIQNALKKDIGLAAGLIRIHFHDCFVQGCDGSV 283
            A+GLS T+Y  SCP  E IV+  + NAL+ D  LAAGLIR+ FHDCF++GCD S+
Sbjct:   23 ARGLSMTYYMMSCPFAEQIVKNSVNNALQADPTLAAGLIRMLFHDCFIEGCDASI 77          
BLAST of FC920815 vs. ExPASy Swiss-Prot
Match: PER56_ARATH (Peroxidase 56 OS=Arabidopsis thaliana GN=PER56 PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 1.170e-37
Identity = 50/124 (40.32%), Postives = 81/124 (65.32%), Query Frame = 1
Query:  286 LEGSTSEQNARPNLSLRKEALKFVDDLRARVHKECGRVVSCADILALAARDSVALSGGPNYDLPLGRRD---SKTFATVVNLPSPFSNTTVILNDFREKTFNARETVALSGGHTVGLAHCPAFT 648
            L+    E+N+ PNL+LR    + +D+++A + KEC  +VSC+D+LAL ARD++    GP++++  GRRD   +     ++NLPSPF+N + ++  F+ K  + ++ V LSGGHT+G  HCP  T
Sbjct:   87 LKNKKDEKNSIPNLTLR--GFEIIDNVKAALEKECPGIVSCSDVLALVARDAMVALNGPSWEVETGRRDGLVTNITEALLNLPSPFNNISSLITQFQSKGLDKKDLVVLSGGHTIGNGHCPQIT 208          

HSP 2 Score: 69.707 bits (169), Expect = 1.170e-37
Identity = 31/58 (53.45%), Postives = 42/58 (72.41%), Query Frame = 2
Query:  110 PPVAKGLSWTFYDQSCPKLESIVRKQIQNALKKDIGLAAGLIRIHFHDCFVQGCDGSV 283
            P   +GL   FYD++CPK E IV+K +  A+K D  +AA L+R+ FHDCFV+GC+GSV
Sbjct:   26 PTNVQGLKVGFYDKACPKAELIVKKSVFEAVKNDRTIAAPLLRMFFHDCFVRGCEGSV 83          
BLAST of FC920815 vs. ExPASy Swiss-Prot
Match: PER3_ARATH (Peroxidase 3 OS=Arabidopsis thaliana GN=PER3 PE=1 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 6.180e-36
Identity = 55/129 (42.64%), Postives = 83/129 (64.34%), Query Frame = 1
Query:  280 SVLEGSTS---EQNARPNLSLRKEALKFVDDLRARVHKECGRVVSCADILALAARDSVALSGGPNYDLPLGRRD---SKTFATVVNLPSPFSNTTVILNDFREKTFNARETVALSGGHTVGLAHCPAFT 648
            SVL  STS   E++A PNL++R     F+D +++ +  +C  +VSCADI+ALA+RD+V  +GGPN+ +P GRRD   S     + N+P P SN T +   F  +  + ++ V LSG HT+G++HC +FT
Sbjct:   76 SVLINSTSGNAERDATPNLTVR--GFGFIDAIKSVLEAQCPGIVSCADIIALASRDAVVFTGGPNWSVPTGRRDGRISNAAEALANIPPPTSNITNLQTLFANQGLDLKDLVLLSGAHTIGVSHCSSFT 202          

HSP 2 Score: 66.6254 bits (161), Expect = 6.180e-36
Identity = 30/57 (52.63%), Postives = 36/57 (63.16%), Query Frame = 2
Query:  113 PVAKGLSWTFYDQSCPKLESIVRKQIQNALKKDIGLAAGLIRIHFHDCFVQGCDGSV 283
            P+   L   FY  SCP  E IV+  + N +     LAA LIR+HFHDCFV+GCDGSV
Sbjct:   21 PIQAQLQMNFYANSCPNAEKIVQDFVSNHVSNAPSLAAALIRMHFHDCFVRGCDGSV 77          
BLAST of FC920815 vs. ExPASy Swiss-Prot
Match: PER30_ARATH (Peroxidase 30 OS=Arabidopsis thaliana GN=PER30 PE=1 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 1.048e-35
Identity = 63/143 (44.06%), Postives = 90/143 (62.94%), Query Frame = 1
Query:  280 SVLEGSTS---EQNARPNLSLRKEALKFVDDLRARVHKECGRVVSCADILALAARDSVALSGGPNYDLPLGRRD----SKTFATVVNLPSPFSNTTVILNDFREKTFNARETVALSGGHTVGLAHCPAFTIASIQTRPHTGQT 687
            SVL  STS   E++A PNL+LR     FV+ ++A + K C + VSCADI+AL ARD+V  +GGP++ +P GRRD    +KT AT  N+P P SN T +   F+ +  N ++ V LSG HT+G++HC     +S+ TR +   T
Sbjct:   79 SVLINSTSGNAERDAPPNLTLR--GFGFVERIKALLEKVCPKTVSCADIIALTARDAVVATGGPSWSVPTGRRDGRISNKTEAT-NNIPPPTSNFTTLQRLFKNQGLNLKDLVLLSGAHTIGVSHC-----SSMNTRLYNFST 213          

HSP 2 Score: 66.6254 bits (161), Expect = 1.048e-35
Identity = 30/52 (57.69%), Postives = 35/52 (67.31%), Query Frame = 2
Query:  128 LSWTFYDQSCPKLESIVRKQIQNALKKDIGLAAGLIRIHFHDCFVQGCDGSV 283
            L   FY +SCP  E I+   IQN +     LAA LIR+HFHDCFV+GCDGSV
Sbjct:   29 LQMNFYAKSCPNAEKIISDHIQNHIHNGPSLAAPLIRMHFHDCFVRGCDGSV 80          
BLAST of FC920815 vs. ExPASy Swiss-Prot
Match: PER25_ARATH (Peroxidase 25 OS=Arabidopsis thaliana GN=PER25 PE=2 SV=2)

HSP 1 Score: 102.449 bits (254), Expect = 1.048e-35
Identity = 57/123 (46.34%), Postives = 78/123 (63.41%), Query Frame = 1
Query:  283 VLEGSTSEQNARPNLSLRKEALKFVDDLRARVHKECGRVVSCADILALAARDSVALSGGPNYDLPLGRRDSK-TFAT-VVNLPSPFSNTTVILNDFREKTFNARETVALSGGHTVGLAHCPAF 645
            +++G ++EQ A PNL LR   L+ +DD +AR+   C  VVSCADILALAARDSV LS GP++ +P GR+D + + AT   NLPSP  +  V    F++K  +  + V L G HT+G   C  F
Sbjct:   81 LIKGKSAEQAALPNLGLR--GLEVIDDAKARLEAVCPGVVSCADILALAARDSVDLSDGPSWRVPTGRKDGRISLATEASNLPSPLDSVAVQKQKFQDKGLDTHDLVTLLGAHTIGQTDCLFF 201          

HSP 2 Score: 68.5514 bits (166), Expect = 1.048e-35
Identity = 28/48 (58.33%), Postives = 36/48 (75.00%), Query Frame = 2
Query:  140 FYDQSCPKLESIVRKQIQNALKKDIGLAAGLIRIHFHDCFVQGCDGSV 283
            +Y  SCPK ESIVR  +++    D  ++ GL+R+HFHDCFVQGCDGSV
Sbjct:   33 YYSTSCPKAESIVRSTVESHFDSDPTISPGLLRLHFHDCFVQGCDGSV 80          
BLAST of FC920815 vs. ExPASy Swiss-Prot
Match: PER9_ARATH (Peroxidase 9 OS=Arabidopsis thaliana GN=PER9 PE=1 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 1.365e-35
Identity = 55/118 (46.61%), Postives = 80/118 (67.80%), Query Frame = 1
Query:  301 SEQNARPNLSLRKEALKFVDDLRARVHKECGRVVSCADILALAARDSVALSGGPNYDLPLGRRDSKTFA---TVVNLPSPFSNTTVILNDFREKTFNARETVALSGGHTVGLAHCPAF 645
            SE+NA PN +  +   + +D+++A++ + C + VSCADILALAAR S  LSGGP+++LPLGRRDS+T +      N+P+P S    +L  F+ K  N  + V+LSGGHT+G+A C  F
Sbjct:  106 SEKNAGPNKNSVR-GFQVIDEIKAKLEQACPQTVSCADILALAARGSTILSGGPSWELPLGRRDSRTASLNGANTNIPAPNSTIQNLLTMFQRKGLNEEDLVSLSGGHTIGVARCTTF 222          

HSP 2 Score: 62.3882 bits (150), Expect = 1.365e-35
Identity = 25/48 (52.08%), Postives = 35/48 (72.92%), Query Frame = 2
Query:  140 FYDQSCPKLESIVRKQIQNALKKDIGLAAGLIRIHFHDCFVQGCDGSV 283
            FY  SCP+ + IV   ++ A+ K+  +AA L+R+HFHDCFVQGCD S+
Sbjct:   49 FYQFSCPQADEIVMTVLEKAIAKEPRMAASLLRLHFHDCFVQGCDASI 96          
BLAST of FC920815 vs. ExPASy Swiss-Prot
Match: PER10_ARATH (Peroxidase 10 OS=Arabidopsis thaliana GN=PER10 PE=1 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.498e-34
Identity = 50/119 (42.02%), Postives = 71/119 (59.66%), Query Frame = 1
Query:  289 EGSTSEQNARPNLSLRKEALKFVDDLRARVHKECGRVVSCADILALAARDSVALSGGPNYDLPLGRRDSKTF---ATVVNLPSPFSNTTVILNDFREKTFNARETVALSGGHTVGLAHC 636
            E    E+NA+PN +  +   + ++D+++ +   C   VSCADI+ALAAR++V L+GGP + +PLGRRDS T    A   NLPSPF     I   F     + ++ V LSG HT+G A C
Sbjct:  105 EDFKGEKNAQPNRNSVR-GFEVIEDIKSDIESSCPLTVSCADIVALAAREAVVLTGGPFWPVPLGRRDSLTASEQAANTNLPSPFEALENITAKFVTLGLDLKDVVVLSGAHTIGFAQC 222          

HSP 2 Score: 74.3294 bits (181), Expect = 2.498e-34
Identity = 30/60 (50.00%), Postives = 43/60 (71.67%), Query Frame = 2
Query:  116 VAKGLSWTFYDQSCPKLESIVRKQIQNALKKDIGLAAGLIRIHFHDCFVQGCDGSVF*RD 295
            +   L++ FYD+SCP+L++IV+  +  A K D  +AA L+R+HFHDCFV GCDGS+   D
Sbjct:   44 LTSNLNYRFYDRSCPRLQTIVKSGVWRAFKDDSRIAASLLRLHFHDCFVNGCDGSILLND 103          
The following BLAST results are available for this feature:
BLAST of FC920815 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 108
Match NameE-valueIdentityDescription
PER12_ARATH3.524e-5657.36Peroxidase 12 OS=Arabidopsis thaliana GN=PER12 PE=... [more]
PER1_SORBI2.594e-4751.24Cationic peroxidase SPC4 (Fragment) OS=Sorghum bic... [more]
PER27_ARATH4.064e-3848.28Peroxidase 27 OS=Arabidopsis thaliana GN=PER27 PE=... [more]
PER47_ARATH5.297e-3844.54Peroxidase 47 OS=Arabidopsis thaliana GN=PER47 PE=... [more]
PER56_ARATH1.170e-3740.32Peroxidase 56 OS=Arabidopsis thaliana GN=PER56 PE=... [more]
PER3_ARATH6.180e-3642.64Peroxidase 3 OS=Arabidopsis thaliana GN=PER3 PE=1 ... [more]
PER30_ARATH1.048e-3544.06Peroxidase 30 OS=Arabidopsis thaliana GN=PER30 PE=... [more]
PER25_ARATH1.048e-3546.34Peroxidase 25 OS=Arabidopsis thaliana GN=PER25 PE=... [more]
PER9_ARATH1.365e-3546.61Peroxidase 9 OS=Arabidopsis thaliana GN=PER9 PE=1 ... [more]
PER10_ARATH2.498e-3442.02Peroxidase 10 OS=Arabidopsis thaliana GN=PER10 PE=... [more]

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Properties
Property NameValue
Genbank descriptionC32013D05EF RVDevelop1 Citrus clementina cDNA clone C32013D05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920815 ID=FC920815; Name=FC920815; organism=Citrus clementina; type=EST; length=692bp
GACAACACAAAGCGAGGTAATCCCAATGGCAACTGCTTCAGCTTCTTCTT
TCATTTCTCTTCTTTTGATATCTTCTCTTTTGCTTGCTTCTTTCACTGAG
GCACAAAAGCCCCCAGTAGCGAAAGGTCTCTCATGGACTTTTTATGACCA
GAGCTGTCCCAAGCTTGAATCCATTGTCAGAAAACAGATCCAAAATGCCC
TGAAAAAAGATATCGGCCTAGCTGCTGGCTTGATTCGCATCCATTTCCAC
GATTGCTTCGTTCAGGGATGTGATGGATCAGTGTTCTAGAGGGATCAACT
AGTGAGCAAAATGCACGTCCAAACCTAAGCTTAAGGAAGGAGGCTTTAAA
ATTTGTAGACGATCTTCGTGCTCGTGTTCACAAGGAGTGTGGCAGAGTTG
TTTCTTGTGCTGATATTCTTGCCCTTGCTGCTCGCGATTCTGTTGCCTTG
TCTGGAGGGCCGAATTACGACCTACCATTGGGAAGGCGAGACAGCAAAAC
ATTCGCAACAGTGGTAAATCTGCCATCACCGTTCAGCAACACCACCGTGA
TCCTCAACGATTTCCGAGAAAAAACCTTCAACGCCAGGGAAACCGTGGCC
CTCTCCGGCGGGCACACCGTTGGGCTAGCTCACTGCCCTGCATTCACCAT
CGCCTCTATCCAAACAAGACCCCACACTGGACAAACATTCGC
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