FC920822

Overview
NameFC920822
Unique NameFC920822
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length678
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC920822_ssr60 microsatellite FC920822_ssr60:60..69. BLAST: Citrus ESTs to Prunus persica proteins V1
FC920822_ssr553 microsatellite FC920822_ssr553:553..564. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of FC920822 vs. ExPASy Swiss-Prot
Match: MAVI_CUCPE (Mavicyanin OS=Cucurbita pepo PE=1 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.955e-17
Identity = 43/103 (41.75%), Postives = 65/103 (63.11%), Query Frame = 1
Query:  175 ATNHTVGGSTGWD--LSSNIHAWSATATFHVGDTLVFTYT-PLHDVLEVNQLEYATCHTVNPISAHNSGDTVVPLIEPGTRYFICGRNGHCASGLKFRVDVLP 474
            AT H VG STGW   +  +   W+++  FHVGD+L+F Y    H+VL+V+Q ++ +C++ +P +++ SG   +PL  PGT YF+CG  GHC  G K  + V P
Sbjct:    1 ATVHKVGDSTGWTTLVPYDYAKWASSNKFHVGDSLLFNYNNKFHNVLQVDQEQFKSCNSSSPAASYTSGADSIPLKRPGTFYFLCGIPGHCQLGQKVEIKVDP 103          
BLAST of FC920822 vs. ExPASy Swiss-Prot
Match: BCP_PEA (Blue copper protein OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.822e-16
Identity = 45/118 (38.14%), Postives = 67/118 (56.78%), Query Frame = 1
Query:  118 AVKAILLTVIISIPFSGVSATNHTVGGSTGWDLSSNIHAWSATATFHVGDTLVFTY-TPLHDVLEVNQLEYATCHTVNPISAHNSGDTVVPLIEPGTRYFICGRNGHCASGLKFRVDV 468
            A+    L  II++    + AT +TVG ++GW +  +   W++  TF VGD+LVF Y    H V EV + +Y +C + N IS  ++G T +PL + G  YFICG  GH   G+K  + V
Sbjct:    6 ALVLCFLLAIINMALPSL-ATVYTVGDTSGWVIGGDYSTWASDKTFAVGDSLVFNYGAGAHTVDEVKESDYKSCTSGNSISTDSTGATTIPLKKAGKHYFICGVPGHSTGGMKLSIKV 122          
BLAST of FC920822 vs. ExPASy Swiss-Prot
Match: ENL1_ARATH (Early nodulin-like protein 1 OS=Arabidopsis thaliana GN=At2g25060 PE=1 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 1.712e-13
Identity = 45/110 (40.91%), Postives = 60/110 (54.55%), Query Frame = 1
Query:  160 FSGVSATNHTVGGSTG-WDL----SSNIHAWSATATFHVGDTLVFTYTPLHD-VLEVNQLEYATCHTVNPISAHNSGDTVVPLIEPGTRYFICGRNGHCASGLKFRVDVL 471
            FS  +A   TVGG +G W +    S +   W+  A F VGD +VF Y    D VLEV +  Y +C+T NP++ +  G+T V L   G  YFI G NGHC  G K  + V+
Sbjct:   23 FSLAAANEVTVGGKSGDWKIPPSSSYSFTEWAQKARFKVGDFIVFRYESGKDSVLEVTKEAYNSCNTTNPLANYTDGETKVKLDRSGPFYFISGANGHCEKGQKLSLVVI 132          
BLAST of FC920822 vs. ExPASy Swiss-Prot
Match: STEL_RHUVE (Stellacyanin OS=Rhus vernicifera PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.814e-13
Identity = 38/103 (36.89%), Postives = 57/103 (55.34%), Query Frame = 1
Query:  178 TNHTVGGSTGWDLS-----SNIHAWSATATFHVGDTLVFTYTP-LHDVLEVNQLEYATCHTVNPISAHNSGDTVVPLIEPGTRYFICGRNGHCASGLKFRVDV 468
            T +TVG S GW +           W++  TFH+GD LVF Y    H+V +V Q  Y +C+   PI+++N+G+  + L   G +Y+ICG   HC  G K  ++V
Sbjct:    1 TVYTVGDSAGWKVPFFGDVDYDWKWASNKTFHIGDVLVFKYDRRFHNVDKVTQKNYQSCNDTTPIASYNTGBBRINLKTVGQKYYICGVPKHCDLGQKVHINV 103          
BLAST of FC920822 vs. ExPASy Swiss-Prot
Match: ENL2_ARATH (Early nodulin-like protein 2 OS=Arabidopsis thaliana GN=At4g27520 PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.229e-12
Identity = 44/120 (36.67%), Postives = 62/120 (51.67%), Query Frame = 1
Query:  127 AILLTVIISIP--FSGVSATNHTVGGSTGWDLS--SNIHAWSATATFHVGDTLVFTYTPLHD-VLEVNQLEYATCHTVNPISAHNSGDTVVPLIEPGTRYFICGRNGHCASGLKFRVDVL 471
            +   T+++S+   F+  +A    VGGS  W  +   N  +WS    F V DTL F+Y    D VLEVN+ +Y  C+T NPI   + GD+ + L   G  YFI G   +C  G K  V V+
Sbjct:   10 SFFFTILLSLSTLFTISNARKFNVGGSGAWVTNPPENYESWSGKNRFLVHDTLYFSYAKGADSVLEVNKADYDACNTKNPIKRVDDGDSEISLDRYGPFYFISGNEDNCKKGQKLNVVVI 129          
BLAST of FC920822 vs. ExPASy Swiss-Prot
Match: BABL_CUCSA (Basic blue protein OS=Cucumis sativus PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.229e-12
Identity = 39/97 (40.21%), Postives = 53/97 (54.64%), Query Frame = 1
Query:  184 HTVGGSTGWDLSSNIHAWSATATFHVGDTLVFTYTP-LHDVLEVNQLEYATCHTVNPISAHNSGDTVVPLIEPGTRYFICGRNGHCASGLKFRVDVL 471
            + VGGS GW    N  +W     F  GD L+F Y P +H+V+ VNQ  ++TC+T      + SG   + L + G  YFIC   GHC SG+K  V+ L
Sbjct:    3 YVVGGSGGWTF--NTESWPKGKRFRAGDILLFNYNPXMHNVVVVNQGGFSTCNTPAGAKVYTSGRDQIKLPK-GQSYFICNFPGHCQSGMKIAVNAL 96          
BLAST of FC920822 vs. ExPASy Swiss-Prot
Match: BCB2_ARATH (Uclacyanin-2 OS=Arabidopsis thaliana GN=At2g44790 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.093e-11
Identity = 43/120 (35.83%), Postives = 58/120 (48.33%), Query Frame = 1
Query:  118 AVKAILLTVIISIPFSGVSATNHTVGGSTGWDLSSNIHAWSATATFHVGDTLVFTYTPLHDVLEVNQLEYATCHTVNPISAHNSGDTVVPLIEPGTRYFICGRNGHCAS--GLKFRVDVL 471
            A    LL V+  +P  G  A  +T+  +TG D S     W+   TF VGD L F Y   H V  V++  Y  C   +    H+ GDT + L   G  YFIC   GHC +  G+K  V+V+
Sbjct:   12 AAATALLLVLTIVP--GAVAVTYTIEWTTGVDYSG----WATGKTFRVGDILEFKYGSSHTVDVVDKAGYDGCDASSSTENHSDGDTKIDLKTVGINYFICSTPGHCRTNGGMKLAVNVV 125          
The following BLAST results are available for this feature:
BLAST of FC920822 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
MAVI_CUCPE1.955e-1741.75Mavicyanin OS=Cucurbita pepo PE=1 SV=1[more]
BCP_PEA2.822e-1638.14Blue copper protein OS=Pisum sativum PE=2 SV=1[more]
ENL1_ARATH1.712e-1340.91Early nodulin-like protein 1 OS=Arabidopsis thalia... [more]
STEL_RHUVE3.814e-1336.89Stellacyanin OS=Rhus vernicifera PE=1 SV=1[more]
ENL2_ARATH3.229e-1236.67Early nodulin-like protein 2 OS=Arabidopsis thalia... [more]
BABL_CUCSA3.229e-1240.21Basic blue protein OS=Cucumis sativus PE=1 SV=1[more]
BCB2_ARATH2.093e-1135.83Uclacyanin-2 OS=Arabidopsis thaliana GN=At2g44790 ... [more]
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Properties
Property NameValue
Genbank descriptionC32013E01EF RVDevelop1 Citrus clementina cDNA clone C32013E01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920822 ID=FC920822; Name=FC920822; organism=Citrus clementina; type=EST; length=678bp
TCGTCGGGGAGAGACTCATTTTGCTCGATTCCCTTCTACTTCACGCTGCT
GCTGGGAAAATATATATATAACAAGAAGGAAAAACTAATGCAGACGACAA
CGATGATGCCTCGCTGGGCGGTGAAGGCGATCTTACTAACTGTGATAATC
TCCATTCCGTTTTCCGGTGTTTCGGCGACTAACCACACCGTCGGTGGCTC
CACCGGGTGGGATCTCTCTTCCAACATCCACGCTTGGTCTGCTACAGCCA
CCTTCCACGTTGGCGACACTCTCGTGTTCACATACACTCCGCTGCACGAT
GTTCTAGAGGTAAACCAACTGGAATATGCCACGTGCCACACGGTTAACCC
AATCAGTGCCCACAATAGCGGCGACACCGTGGTGCCGTTGATTGAACCAG
GTACCCGCTACTTCATCTGCGGGCGAAACGGCCACTGCGCCTCGGGCCTC
AAGTTCCGCGTGGACGTCCTTCCTCAGCTCGATGCCAACGTCACCCGCCG
CACCCCGAGATCACCCCATCGTTCTCCGCCTTCACCGCCACTGCGCCATC
CCCCTCCTCCTCCTCCCCCGATAAACTCATCGTCGGATGGAAAAGAGCCA
GACATTCCTTCTGATCCAGGCTTTGACTCTCCCGGACCTTGTGGGAACTC
AGCTGTTGGCGATATGATCACCGATTGG
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