FC920823

Overview
NameFC920823
Unique NameFC920823
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length695
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC920823_ssr85 microsatellite FC920823_ssr85:85..94. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig14203 contig Ccv1_Contig14203:1..695. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920823 vs. ExPASy Swiss-Prot
Match: CADH9_ARATH (Probable cinnamyl alcohol dehydrogenase 9 OS=Arabidopsis thaliana GN=CAD9 PE=1 SV=2)

HSP 1 Score: 298.901 bits (764), Expect = 1.696e-80
Identity = 132/182 (72.53%), Postives = 151/182 (82.97%), Query Frame = 1
Query:  100 MAKSPETEQPQKAIGWAARDNTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMKYYGMTE 645
            MAKSPETE P K  GW ARD +G  SPFHFSRR+ G +DVT+KILFCG+CH+DLH  +N+WG + YP+VPGHEIVG  TKVG NV+KFKEGD+VGVGV+  SCQ CESC Q LENYCP M  TYN+I  DGTK YGGYS+ IVVDQ +VLRFP+N+P D+GAPLLCAGITVYSPMKYYGMTE
Sbjct:    1 MAKSPETEHPNKVFGWGARDKSGVLSPFHFSRRDNGENDVTVKILFCGVCHTDLHTIKNDWGYSYYPVVPGHEIVGIATKVGKNVTKFKEGDRVGVGVISGSCQSCESCDQDLENYCPQMSFTYNAIGSDGTKNYGGYSENIVVDQRFVLRFPENLPSDSGAPLLCAGITVYSPMKYYGMTE 182          
BLAST of FC920823 vs. ExPASy Swiss-Prot
Match: MTDH_MEDSA (Probable mannitol dehydrogenase OS=Medicago sativa GN=CAD1 PE=1 SV=1)

HSP 1 Score: 297.745 bits (761), Expect = 3.778e-80
Identity = 135/183 (73.77%), Postives = 152/183 (83.06%), Query Frame = 1
Query:  100 MAKSPETEQPQKAIGWAARDNTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMKYYGMTEP 648
            MAKSPETE P KA GWAARD +GT SPFHFSRRE G DDV++KIL+CG+CHSDLH  +N+WG T YP+VPGHEIVG VTKVG NV KF+ GD VGVGV+V SCQ CE+C Q LE YCP  + TYNS    GT+TYGGYSD +VV Q YV++FPDN+PLDAGAPLLCAGITVYSPMKYYGMTEP
Sbjct:    1 MAKSPETELPLKAFGWAARDTSGTLSPFHFSRRENGDDDVSVKILYCGVCHSDLHTLKNDWGFTTYPVVPGHEIVGVVTKVGINVKKFRVGDNVGVGVIVESCQTCENCNQDLEQYCPKPVFTYNS-PYKGTRTYGGYSDFVVVHQRYVVQFPDNLPLDAGAPLLCAGITVYSPMKYYGMTEP 182          
BLAST of FC920823 vs. ExPASy Swiss-Prot
Match: MTDH1_STYHU (Probable mannitol dehydrogenase 1 OS=Stylosanthes humilis GN=CAD1 PE=2 SV=1)

HSP 1 Score: 278.1 bits (710), Expect = 3.098e-74
Identity = 124/172 (72.09%), Postives = 146/172 (84.88%), Query Frame = 1
Query:  133 KAIGWAARDNTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMKYYGMTEP 648
            KA GWAA+D +G  SPFHF+RR+  ADDVT+KIL+CG+CHSDLH  +N+WG T YP+VPGHEI G VTKVG+NV+KFKEGD+VGVGV+V SCQ+CE CQQ LE+YCP  + TYNS    GT+T GGYSD +VV Q +VL+FPDN+PLDAGAPLLCAGITVYSPMKYYGMTEP
Sbjct:    5 KAFGWAAKDASGHLSPFHFTRRQNEADDVTLKILYCGVCHSDLHTVKNDWGFTTYPVVPGHEIAGIVTKVGSNVTKFKEGDRVGVGVIVDSCQECECCQQDLESYCPKPVFTYNS-PYKGTRTQGGYSDFVVVHQRFVLQFPDNLPLDAGAPLLCAGITVYSPMKYYGMTEP 175          
BLAST of FC920823 vs. ExPASy Swiss-Prot
Match: GEDH1_OCIBA (Geraniol dehydrogenase 1 OS=Ocimum basilicum GN=GEDH1 PE=1 SV=1)

HSP 1 Score: 276.174 bits (705), Expect = 1.177e-73
Identity = 122/183 (66.67%), Postives = 149/183 (81.42%), Query Frame = 1
Query:  100 MAKSPETEQPQKAIGWAARDNTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMKYYGMTEP 648
            MAKSPETE P KA+GWAA DN+GTFSPF+FSRR TG  DV  ++L+CG+CHSDLH  +NEWGVT+YPIVPGHEIVG VT+VG+ V K K GDKVGVGVLV SC++C+ C   LENYC   ILTY +   DGT   GGYSD++V D+H+++R+P+N PLDAGAPLLCAGIT YSP+KY+G+ +P
Sbjct:    1 MAKSPETEHPVKALGWAATDNSGTFSPFNFSRRATGERDVQFRVLYCGVCHSDLHMVKNEWGVTHYPIVPGHEIVGIVTEVGSKVEKVKIGDKVGVGVLVGSCRQCDQCSNDLENYCYKQILTYGAPYLDGTIARGGYSDIMVADEHFIIRWPENFPLDAGAPLLCAGITTYSPLKYFGLDKP 183          
BLAST of FC920823 vs. ExPASy Swiss-Prot
Match: CADH3_ARATH (Cinnamyl alcohol dehydrogenase 3 OS=Arabidopsis thaliana GN=CAD3 PE=1 SV=1)

HSP 1 Score: 274.248 bits (700), Expect = 4.474e-73
Identity = 119/171 (69.59%), Postives = 139/171 (81.29%), Query Frame = 1
Query:  133 KAIGWAARDNTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMKYYGMTE 645
            +A GWAA D +G  SPFHFSRRE G +DVT+KILFCG+CHSDLH  +N WG + YPI+PGHEIVG  TKVG NV+KFKEGD+VGVGV++ SCQ CESC Q LENYCP ++ TYNS   DGT+  GGYSD+IVVD  +VL  PD +P D+GAPLLCAGITVYSPMKYYGMT+
Sbjct:    6 RAFGWAANDESGVLSPFHFSRRENGENDVTVKILFCGVCHSDLHTIKNHWGFSRYPIIPGHEIVGIATKVGKNVTKFKEGDRVGVGVIIGSCQSCESCNQDLENYCPKVVFTYNSRSSDGTRNQGGYSDVIVVDHRFVLSIPDGLPSDSGAPLLCAGITVYSPMKYYGMTK 176          
BLAST of FC920823 vs. ExPASy Swiss-Prot
Match: CADH2_ARATH (Cinnamyl alcohol dehydrogenase 2 OS=Arabidopsis thaliana GN=CAD2 PE=1 SV=1)

HSP 1 Score: 270.781 bits (691), Expect = 4.946e-72
Identity = 120/172 (69.77%), Postives = 139/172 (80.81%), Query Frame = 1
Query:  133 KAIGWAARDNTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGT-KTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMKYYGMTE 645
            KA GWAA D +G  SPFHFSRRE G +DVT+KILFCG+CHSDLH  +N WG + YPI+PGHEIVG  TKVG NV+KFKEGD+VGVGV++ SCQ CESC Q LENYCP ++ TYNS   DGT +  GGYSD+IVVD  +VL  PD +P D+GAPLLCAGITVYSPMKYYGMT+
Sbjct:    6 KAFGWAANDESGVLSPFHFSRRENGENDVTVKILFCGVCHSDLHTIKNHWGFSRYPIIPGHEIVGIATKVGKNVTKFKEGDRVGVGVIIGSCQSCESCNQDLENYCPKVVFTYNSRSSDGTSRNQGGYSDVIVVDHRFVLSIPDGLPSDSGAPLLCAGITVYSPMKYYGMTK 177          
BLAST of FC920823 vs. ExPASy Swiss-Prot
Match: MTDH_MESCR (Probable mannitol dehydrogenase OS=Mesembryanthemum crystallinum GN=ELI3 PE=2 SV=1)

HSP 1 Score: 265.388 bits (677), Expect = 2.078e-70
Identity = 118/180 (65.56%), Postives = 140/180 (77.78%), Query Frame = 1
Query:  109 SPETEQPQKAIGWAARDNTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMKYYGMTEP 648
            +PE   PQKA GWAARD +GT SP  FSRR TG  DVT K+L+CGICHSDLH  +NEWG   YP +PGHEIVG VT+VGN V  FK GDKVGVG +V SC+ CESC+  LENYCP MILTY S   DGT TYGGYSD++VV++H+ +R PDNM LDA APLLCAG+TVYSP+K++ + +P
Sbjct:    5 APENVHPQKAFGWAARDTSGTLSPLKFSRRATGEQDVTFKVLYCGICHSDLHYIKNEWGNAVYPAIPGHEIVGVVTEVGNKVQNFKVGDKVGVGCMVGSCRSCESCENHLENYCPKMILTYGSTYYDGTLTYGGYSDIMVVEEHFAVRIPDNMALDATAPLLCAGVTVYSPLKHFELDKP 184          
BLAST of FC920823 vs. ExPASy Swiss-Prot
Match: MTDH_FRAAN (Probable mannitol dehydrogenase OS=Fragaria ananassa GN=CAD PE=2 SV=1)

HSP 1 Score: 260.766 bits (665), Expect = 5.119e-69
Identity = 112/178 (62.92%), Postives = 141/178 (79.21%), Query Frame = 1
Query:  115 ETEQPQKAIGWAARDNTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMKYYGMTEP 648
            E E  +KA GWAARD++G  SPF+F RRETG  DVT K+L+CGICHSDLH  +NEWG + YP+VPGHEIVG VT+VG+ V KFK GD+VGVG +V SC+ CE+C   LENYCP  ILTY +   DG+ TYGGYSD++V D+H+++R PDN+PLD  APLLCAGIT YSP++Y+G+ +P
Sbjct:    4 EQEHRKKASGWAARDSSGVLSPFNFYRRETGEKDVTFKVLYCGICHSDLHMVKNEWGFSTYPLVPGHEIVGEVTEVGSKVQKFKVGDRVGVGCIVGSCRSCENCTDHLENYCPKQILTYGAKYYDGSTTYGGYSDIMVADEHFIVRIPDNLPLDGAAPLLCAGITTYSPLRYFGLDKP 181          
BLAST of FC920823 vs. ExPASy Swiss-Prot
Match: MTDH_APIGR (Mannitol dehydrogenase OS=Apium graveolens GN=MTD PE=1 SV=1)

HSP 1 Score: 260.381 bits (664), Expect = 6.685e-69
Identity = 118/183 (64.48%), Postives = 138/183 (75.41%), Query Frame = 1
Query:  100 MAKSPETEQPQKAIGWAARDNTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMKYYGMTEP 648
            MAKS E E P KA GWAARD TG  SPF FSRR TG  DV +K+LFCG+CHSD H   N WG T YPIVPGHEIVG VT+VG+ V K K GD VG+G LV SC+ CESC    E++C N I TY SI  DGT T+GGYSD +V D+H++LR+P N+PLD+GAPLLCAGIT YSP+KYYG+ +P
Sbjct:    1 MAKSSEIEHPVKAFGWAARDTTGLLSPFKFSRRATGEKDVRLKVLFCGVCHSDHHMIHNNWGFTTYPIVPGHEIVGVVTEVGSKVEKVKVGDNVGIGCLVGSCRSCESCCDNRESHCENTIDTYGSIYFDGTMTHGGYSDTMVADEHFILRWPKNLPLDSGAPLLCAGITTYSPLKYYGLDKP 183          
BLAST of FC920823 vs. ExPASy Swiss-Prot
Match: CADH3_ORYSJ (Probable cinnamyl alcohol dehydrogenase 3 OS=Oryza sativa subsp. japonica GN=CAD3 PE=2 SV=1)

HSP 1 Score: 259.61 bits (662), Expect = 1.140e-68
Identity = 115/182 (63.19%), Postives = 142/182 (78.02%), Query Frame = 1
Query:  103 AKSPETEQPQKAIGWAARDNTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMKYYGMTEP 648
            A S    + Q+A+G AARD++G  SPF  SRR TG DDV IKILFCGICHSDLHC +NEW  + YP+VPGHEI G VT+VG NV++FK GD+VGVG +V SC+ CESC  G EN+CP  + TYNS+D+DGT TYGGYS ++VV + +V+ FP+ MPLD GAPLLCAGITVY+PMKY+G+  P
Sbjct:    5 AASAAAGEEQQAVGLAARDSSGHLSPFAISRRSTGDDDVAIKILFCGICHSDLHCIKNEWKHSIYPLVPGHEIAGVVTEVGKNVTRFKAGDRVGVGCMVNSCRSCESCNNGFENHCPEGVFTYNSVDKDGTVTYGGYSSMVVVHERFVVMFPEAMPLDVGAPLLCAGITVYTPMKYHGLNAP 186          
The following BLAST results are available for this feature:
BLAST of FC920823 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 119
Match NameE-valueIdentityDescription
CADH9_ARATH1.696e-8072.53Probable cinnamyl alcohol dehydrogenase 9 OS=Arabi... [more]
MTDH_MEDSA3.778e-8073.77Probable mannitol dehydrogenase OS=Medicago sativa... [more]
MTDH1_STYHU3.098e-7472.09Probable mannitol dehydrogenase 1 OS=Stylosanthes ... [more]
GEDH1_OCIBA1.177e-7366.67Geraniol dehydrogenase 1 OS=Ocimum basilicum GN=GE... [more]
CADH3_ARATH4.474e-7369.59Cinnamyl alcohol dehydrogenase 3 OS=Arabidopsis th... [more]
CADH2_ARATH4.946e-7269.77Cinnamyl alcohol dehydrogenase 2 OS=Arabidopsis th... [more]
MTDH_MESCR2.078e-7065.56Probable mannitol dehydrogenase OS=Mesembryanthemu... [more]
MTDH_FRAAN5.119e-6962.92Probable mannitol dehydrogenase OS=Fragaria ananas... [more]
MTDH_APIGR6.685e-6964.48Mannitol dehydrogenase OS=Apium graveolens GN=MTD ... [more]
CADH3_ORYSJ1.140e-6863.19Probable cinnamyl alcohol dehydrogenase 3 OS=Oryza... [more]

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Properties
Property NameValue
Genbank descriptionC32013E03EF RVDevelop1 Citrus clementina cDNA clone C32013E03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920823 ID=FC920823; Name=FC920823; organism=Citrus clementina; type=EST; length=695bp
GATTGCCTCAGAAATCACAAGCCCCCTTCTTCTATCATTATTACGCACAT
TTCATTGTTTAAGTGAGAGTGAAGGATAAAGGCCAGAGAGAGAGAAAGCA
TGGCAAAATCACCAGAAACAGAGCAGCCTCAAAAGGCCATTGGTTGGGCT
GCCAGAGACAACACTGGAACCTTCTCCCCATTCCATTTCTCCAGAAGAGA
AACTGGTGCTGATGATGTAACTATTAAGATCCTCTTTTGTGGGATTTGCC
ACTCGGACTTGCATTGTGCCAGAAATGAATGGGGTGTCACCAATTACCCA
ATTGTTCCCGGGCATGAAATTGTTGGTACTGTGACAAAAGTTGGAAATAA
CGTGTCAAAATTCAAAGAGGGTGACAAGGTTGGAGTTGGGGTCTTGGTAG
CCTCCTGCCAAAAATGTGAAAGCTGTCAGCAGGGCTTGGAGAATTACTGT
CCTAATATGATACTTACATATAACTCCATTGATCGTGATGGAACAAAAAC
TTATGGTGGTTACTCAGATCTGATTGTTGTTGATCAGCATTATGTGCTCC
GCTTTCCTGACAACATGCCTCTTGATGCGGGTGCACCACTTTTGTGTGCG
GGGATCACAGTGTACAGCCCAATGAAATATTATGGAATGACTGAGCCAGG
CAAGCATTTGGGTGTAGCAGGACTTGGTGGGCTTGGCCATGTTGC
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