FC920824
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC920824 vs. ExPASy Swiss-Prot
Match: RK4_ARATH (50S ribosomal protein L4, chloroplastic OS=Arabidopsis thaliana GN=RPL4 PE=1 SV=2) HSP 1 Score: 253.832 bits (647), Expect = 4.812e-67 Identity = 135/201 (67.16%), Postives = 158/201 (78.61%), Query Frame = 3 Query: 9 SSSNKVPKP-IQLAKPNSLINLPPKPLIVSSQLASPLPILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXE-NTIVVEEFDGKFERPKTKEFIEAMRRWGLHPKQIATLLVMEVSENV 605 SSS+++PK I ++K S KPL VSSQLA+ LPILSF GEK+GETYLDLK+A DTARAVVHRA++TD+ NKRRGTASTLTRGEVRGGG KPYSQKKTG ARRGS RTPLRPGGGVVFGP+P+DWSIKIN+KEK+L E IVVEEF KFE+PKTK+F+ AM+RWGL PK+ A L+++V ENV Sbjct: 21 SSSHQIPKTYISVSKLGS--GRVSKPLSVSSQLAT-LPILSFEGEKVGETYLDLKAAPEDTARAVVHRAIVTDLNNKRRGTASTLTRGEVRGGGIKPYSQKKTGHARRGSQRTPLRPGGGVVFGPRPKDWSIKINRKEKKLAISTALSSAASAEGGAIVVEEFGEKFEKPKTKDFLAAMQRWGLDPKEKAMFLMIDVDENV 218
BLAST of FC920824 vs. ExPASy Swiss-Prot
Match: RK4_TOBAC (50S ribosomal protein L4, chloroplastic OS=Nicotiana tabacum GN=RPL4 PE=2 SV=1) HSP 1 Score: 235.343 bits (599), Expect = 1.771e-61 Identity = 128/201 (63.68%), Postives = 151/201 (75.12%), Query Frame = 3 Query: 36 IQLAKPN-----SLINLPPKPLIVS------SQLASPLPILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLHPKQIATLLVMEVSENV 605 I L+ PN L+ PK L V+ S++A+ +PILSF G ++G T L+LKSA DTARAVVHR L TD++N+RRGTASTLTR EVRGGG KPY QKKTGRARRGSNRTPLRPGGGVVFGPKP+DWS+KINKKEKRL ENTIVVEEF+ KFE+PKTKEFI+ MRRWGL PK+ + L+ +VS+NV Sbjct: 12 IFLSNPNIQSSKHLLFRSPKQLSVAAIATIRSEVAT-IPILSFDGAEVGSTTLNLKSAPLDTARAVVHRGLTTDLRNQRRGTASTLTRSEVRGGGIKPYPQKKTGRARRGSNRTPLRPGGGVVFGPKPKDWSVKINKKEKRL--AISTALSSASENTIVVEEFNDKFEKPKTKEFIDLMRRWGLDPKEKSLFLMTDVSDNV 209
BLAST of FC920824 vs. ExPASy Swiss-Prot
Match: RK4_SPIOL (50S ribosomal protein L4, chloroplastic OS=Spinacia oleracea GN=RPL4 PE=1 SV=1) HSP 1 Score: 230.335 bits (586), Expect = 5.698e-60 Identity = 121/200 (60.50%), Postives = 148/200 (74.00%), Query Frame = 3 Query: 6 TSSSNKVPKPIQLAKPNSLINLPPKPLIVSSQLASPLPILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLHPKQIATLLVMEVSENV 605 + S N KPI L P+S + L + S+L PLPIL+F+GEK+GET+L+LK+A P+ ARAVVHR LIT +QNKRRGTASTLTR EVRGGGRKPY QKKTGRARRGS +PLRPGGGV+FGPKPRDW+IK+NKKE+RL N+ VVEEF FE+PKTK+FI AM+RWGL P + + +M++ ENV Sbjct: 21 SKSRNFSSKPI-LKLPSSSHSQTSLSLSIKSELI-PLPILNFSGEKVGETFLNLKTAPPEKARAVVHRGLITHLQNKRRGTASTLTRAEVRGGGRKPYPQKKTGRARRGSQGSPLRPGGGVIFGPKPRDWTIKMNKKERRLALSTAIASAVG--NSFVVEEFAENFEKPKTKDFIAAMQRWGLDPAEKSLFFLMDLVENV 216
BLAST of FC920824 vs. ExPASy Swiss-Prot
Match: RL4_THEEB (50S ribosomal protein L4 OS=Thermosynechococcus elongatus (strain BP-1) GN=rplD PE=3 SV=1) HSP 1 Score: 164.466 bits (415), Expect = 3.840e-40 Identity = 83/162 (51.23%), Postives = 109/162 (67.28%), Query Frame = 3 Query: 120 ILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLHPKQIATLLVMEVSENV 605 + + G GE LDL +A P+TA +VHRAL+ + N R+GT ST TR EVRGGGRKP+ QK TGRAR GS R+PL GGGV+FGPKPRD+S K+N+KE+RL E+ IVV++F RPKTKE + A++RWG+ P+Q LL +++E V Sbjct: 6 VKDWQGADSGEATLDLATAKPETASHIVHRALVRQLANARQGTVSTKTRAEVRGGGRKPWRQKGTGRARAGSIRSPLWRGGGVIFGPKPRDYSQKMNRKERRL--ALRTALMSRVEDLIVVQDFADHLPRPKTKELVTALQRWGIEPEQKVLLLAADITETV 165
BLAST of FC920824 vs. ExPASy Swiss-Prot
Match: RL4_CYAP4 (50S ribosomal protein L4 OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=rplD PE=3 SV=1) HSP 1 Score: 162.925 bits (411), Expect = 1.117e-39 Identity = 84/162 (51.85%), Postives = 107/162 (66.05%), Query Frame = 3 Query: 120 ILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLHPKQIATLLVMEVSENV 605 I + G ++GET L+L+ A + A +VHRAL M N R+GTAST TR EVRGGGRKP+ QK TGRAR GSNR+PL GGGV+FGPKPRD+SIK+N KE+RL ++ IVVE+F K RPKTKE A+ RWG+ P L+V + + + Sbjct: 6 IKDWQGSEVGETALELRVAKAENAAHIVHRALRRQMANARQGTASTKTRAEVRGGGRKPWRQKGTGRARAGSNRSPLWRGGGVIFGPKPRDYSIKMNYKERRL--ALRTALISRSDSLIVVEDFSDKLPRPKTKELAAAIARWGVQPNDKVLLIVADKQDTI 165
BLAST of FC920824 vs. ExPASy Swiss-Prot
Match: RL4_NOSP7 (50S ribosomal protein L4 OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=rplD PE=3 SV=1) HSP 1 Score: 162.54 bits (410), Expect = 1.459e-39 Identity = 79/160 (49.38%), Postives = 112/160 (70.00%), Query Frame = 3 Query: 120 ILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLHPKQIATLLVMEVSE 599 + ++ GE++GET +L+ A +TA +VHRAL+ + N R+G AST TR EVRGGGRKP+ QK TGRAR GS R+PL GGGV+FGPKPRD+ +K+N+KE+RL ++ IVVEEF + RPKTK+ + A+ RWG+ P+ A L++ E+++ Sbjct: 6 VKNWQGEQVGETTFELRVAKEETASHIVHRALVRQLTNARQGNASTKTRAEVRGGGRKPWRQKGTGRARAGSIRSPLWRGGGVIFGPKPRDFDLKLNRKERRL--ALRTAFVGRIDDLIVVEEFSTELSRPKTKDLVAALARWGVVPESKALLILSEIAD 163
BLAST of FC920824 vs. ExPASy Swiss-Prot
Match: RL4_CYAP7 (50S ribosomal protein L4 OS=Cyanothece sp. (strain PCC 7424) GN=rplD PE=3 SV=1) HSP 1 Score: 161.384 bits (407), Expect = 3.250e-39 Identity = 80/162 (49.38%), Postives = 111/162 (68.52%), Query Frame = 3 Query: 120 ILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLHPKQIATLLVMEVSENV 605 + ++ G+++G+T L+LK A +TA ++HRA++ + N R+G AST TR EVRGGGRKP+ QK TGRAR GSNR+PL GGGV+FGPKPRD+S K+N+KE+RL EN I+VE F + +PKTKE A+ RWG+ K L++ E+ EN+ Sbjct: 6 VKNWQGDEVGQTSLELKVAKEETASHILHRAVVRHLANARQGNASTKTRAEVRGGGRKPWRQKGTGRARAGSNRSPLWRGGGVIFGPKPRDYSQKMNRKERRL--ALRTALNSKAENLIIVENFAPELPQPKTKELALALTRWGVTEKDKVLLILSEIPENI 165
BLAST of FC920824 vs. ExPASy Swiss-Prot
Match: RL4_CYAP8 (50S ribosomal protein L4 OS=Cyanothece sp. (strain PCC 8801) GN=rplD PE=3 SV=1) HSP 1 Score: 160.614 bits (405), Expect = 5.544e-39 Identity = 80/162 (49.38%), Postives = 110/162 (67.90%), Query Frame = 3 Query: 120 ILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLHPKQIATLLVMEVSENV 605 I ++ GE++G+ L+LK A + A +VHRAL+ N R+GTAST TR EVRGGGRKP+ QK TGRAR GS R+PL GGGV FGPKP+D+++K+N+KE+RL E+ IVVE F + +PKTKE + A+ RWG+ Q L+V E+++N+ Sbjct: 6 IKNWQGEEVGQATLELKVAKEENAAHIVHRALVRQQTNARQGTASTKTRAEVRGGGRKPWRQKGTGRARAGSIRSPLWRGGGVTFGPKPKDFNVKMNRKERRL--ALRTALDSRIEDLIVVENFAEQLTQPKTKELVSALTRWGIDGNQKVVLIVSEITDNI 165
BLAST of FC920824 vs. ExPASy Swiss-Prot
Match: RL4_MICAN (50S ribosomal protein L4 OS=Microcystis aeruginosa (strain NIES-843) GN=rplD PE=3 SV=1) HSP 1 Score: 160.229 bits (404), Expect = 7.241e-39 Identity = 79/162 (48.77%), Postives = 111/162 (68.52%), Query Frame = 3 Query: 120 ILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLHPKQIATLLVMEVSENV 605 + ++ GE+ G L+LK+A P+TA+ ++HR +++ + R+G AS+ TR EVRGGGRKP+ QK TGRAR GS R+PL GGGV+FGPKPRD+ +K+N+KEKRL +N IVVE F +F +PKTKE A+ RWG P++ L++ E+ ENV Sbjct: 6 VKNWQGEEAGTGTLELKTAKPETAKHLIHRVVVSHLAAARQGNASSKTRSEVRGGGRKPWRQKGTGRARAGSIRSPLWRGGGVIFGPKPRDFEVKVNRKEKRL--ALRTALISQADNFIVVESFAEQFSQPKTKELTAALSRWGASPEEKILLILTEIPENV 165
BLAST of FC920824 vs. ExPASy Swiss-Prot
Match: RL4_ANASP (50S ribosomal protein L4 OS=Anabaena sp. (strain PCC 7120) GN=rplD PE=3 SV=1) HSP 1 Score: 159.073 bits (401), Expect = 1.613e-38 Identity = 80/162 (49.38%), Postives = 107/162 (66.05%), Query Frame = 3 Query: 120 ILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLHPKQIATLLVMEVSENV 605 + ++ GE+IG+ +L+ A TA +VHRAL+ N R+GTAST TR EVRGGGRKP+ QK TGRAR GS R+PL GGGV+FGPKPRD+ +K+N+KE+RL ++ I+VEEF + RPKTK+ + A RWG P+ L++ E ENV Sbjct: 6 VKNWQGEQIGQKTFELRVAKETTAAHIVHRALVRQQTNARQGTASTKTRAEVRGGGRKPWRQKGTGRARAGSIRSPLWRGGGVIFGPKPRDFDLKMNRKERRL--ALRTAFVSRIDDLILVEEFSNELSRPKTKDLVAAFTRWGAEPESKILLILSEFPENV 165 The following BLAST results are available for this feature:
BLAST of FC920824 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >FC920824 ID=FC920824; Name=FC920824; organism=Citrus clementina; type=EST; length=606bpback to top |