FC920824

Overview
NameFC920824
Unique NameFC920824
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length606
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9782 contig Ccv1_Contig9782:413..1018. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920824 vs. ExPASy Swiss-Prot
Match: RK4_ARATH (50S ribosomal protein L4, chloroplastic OS=Arabidopsis thaliana GN=RPL4 PE=1 SV=2)

HSP 1 Score: 253.832 bits (647), Expect = 4.812e-67
Identity = 135/201 (67.16%), Postives = 158/201 (78.61%), Query Frame = 3
Query:    9 SSSNKVPKP-IQLAKPNSLINLPPKPLIVSSQLASPLPILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXE-NTIVVEEFDGKFERPKTKEFIEAMRRWGLHPKQIATLLVMEVSENV 605
            SSS+++PK  I ++K  S      KPL VSSQLA+ LPILSF GEK+GETYLDLK+A  DTARAVVHRA++TD+ NKRRGTASTLTRGEVRGGG KPYSQKKTG ARRGS RTPLRPGGGVVFGP+P+DWSIKIN+KEK+L            E   IVVEEF  KFE+PKTK+F+ AM+RWGL PK+ A  L+++V ENV
Sbjct:   21 SSSHQIPKTYISVSKLGS--GRVSKPLSVSSQLAT-LPILSFEGEKVGETYLDLKAAPEDTARAVVHRAIVTDLNNKRRGTASTLTRGEVRGGGIKPYSQKKTGHARRGSQRTPLRPGGGVVFGPRPKDWSIKINRKEKKLAISTALSSAASAEGGAIVVEEFGEKFEKPKTKDFLAAMQRWGLDPKEKAMFLMIDVDENV 218          
BLAST of FC920824 vs. ExPASy Swiss-Prot
Match: RK4_TOBAC (50S ribosomal protein L4, chloroplastic OS=Nicotiana tabacum GN=RPL4 PE=2 SV=1)

HSP 1 Score: 235.343 bits (599), Expect = 1.771e-61
Identity = 128/201 (63.68%), Postives = 151/201 (75.12%), Query Frame = 3
Query:   36 IQLAKPN-----SLINLPPKPLIVS------SQLASPLPILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLHPKQIATLLVMEVSENV 605
            I L+ PN      L+   PK L V+      S++A+ +PILSF G ++G T L+LKSA  DTARAVVHR L TD++N+RRGTASTLTR EVRGGG KPY QKKTGRARRGSNRTPLRPGGGVVFGPKP+DWS+KINKKEKRL            ENTIVVEEF+ KFE+PKTKEFI+ MRRWGL PK+ +  L+ +VS+NV
Sbjct:   12 IFLSNPNIQSSKHLLFRSPKQLSVAAIATIRSEVAT-IPILSFDGAEVGSTTLNLKSAPLDTARAVVHRGLTTDLRNQRRGTASTLTRSEVRGGGIKPYPQKKTGRARRGSNRTPLRPGGGVVFGPKPKDWSVKINKKEKRL--AISTALSSASENTIVVEEFNDKFEKPKTKEFIDLMRRWGLDPKEKSLFLMTDVSDNV 209          
BLAST of FC920824 vs. ExPASy Swiss-Prot
Match: RK4_SPIOL (50S ribosomal protein L4, chloroplastic OS=Spinacia oleracea GN=RPL4 PE=1 SV=1)

HSP 1 Score: 230.335 bits (586), Expect = 5.698e-60
Identity = 121/200 (60.50%), Postives = 148/200 (74.00%), Query Frame = 3
Query:    6 TSSSNKVPKPIQLAKPNSLINLPPKPLIVSSQLASPLPILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLHPKQIATLLVMEVSENV 605
            + S N   KPI L  P+S  +     L + S+L  PLPIL+F+GEK+GET+L+LK+A P+ ARAVVHR LIT +QNKRRGTASTLTR EVRGGGRKPY QKKTGRARRGS  +PLRPGGGV+FGPKPRDW+IK+NKKE+RL             N+ VVEEF   FE+PKTK+FI AM+RWGL P + +   +M++ ENV
Sbjct:   21 SKSRNFSSKPI-LKLPSSSHSQTSLSLSIKSELI-PLPILNFSGEKVGETFLNLKTAPPEKARAVVHRGLITHLQNKRRGTASTLTRAEVRGGGRKPYPQKKTGRARRGSQGSPLRPGGGVIFGPKPRDWTIKMNKKERRLALSTAIASAVG--NSFVVEEFAENFEKPKTKDFIAAMQRWGLDPAEKSLFFLMDLVENV 216          
BLAST of FC920824 vs. ExPASy Swiss-Prot
Match: RL4_THEEB (50S ribosomal protein L4 OS=Thermosynechococcus elongatus (strain BP-1) GN=rplD PE=3 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 3.840e-40
Identity = 83/162 (51.23%), Postives = 109/162 (67.28%), Query Frame = 3
Query:  120 ILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLHPKQIATLLVMEVSENV 605
            +  + G   GE  LDL +A P+TA  +VHRAL+  + N R+GT ST TR EVRGGGRKP+ QK TGRAR GS R+PL  GGGV+FGPKPRD+S K+N+KE+RL            E+ IVV++F     RPKTKE + A++RWG+ P+Q   LL  +++E V
Sbjct:    6 VKDWQGADSGEATLDLATAKPETASHIVHRALVRQLANARQGTVSTKTRAEVRGGGRKPWRQKGTGRARAGSIRSPLWRGGGVIFGPKPRDYSQKMNRKERRL--ALRTALMSRVEDLIVVQDFADHLPRPKTKELVTALQRWGIEPEQKVLLLAADITETV 165          
BLAST of FC920824 vs. ExPASy Swiss-Prot
Match: RL4_CYAP4 (50S ribosomal protein L4 OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=rplD PE=3 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 1.117e-39
Identity = 84/162 (51.85%), Postives = 107/162 (66.05%), Query Frame = 3
Query:  120 ILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLHPKQIATLLVMEVSENV 605
            I  + G ++GET L+L+ A  + A  +VHRAL   M N R+GTAST TR EVRGGGRKP+ QK TGRAR GSNR+PL  GGGV+FGPKPRD+SIK+N KE+RL            ++ IVVE+F  K  RPKTKE   A+ RWG+ P     L+V +  + +
Sbjct:    6 IKDWQGSEVGETALELRVAKAENAAHIVHRALRRQMANARQGTASTKTRAEVRGGGRKPWRQKGTGRARAGSNRSPLWRGGGVIFGPKPRDYSIKMNYKERRL--ALRTALISRSDSLIVVEDFSDKLPRPKTKELAAAIARWGVQPNDKVLLIVADKQDTI 165          
BLAST of FC920824 vs. ExPASy Swiss-Prot
Match: RL4_NOSP7 (50S ribosomal protein L4 OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=rplD PE=3 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 1.459e-39
Identity = 79/160 (49.38%), Postives = 112/160 (70.00%), Query Frame = 3
Query:  120 ILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLHPKQIATLLVMEVSE 599
            + ++ GE++GET  +L+ A  +TA  +VHRAL+  + N R+G AST TR EVRGGGRKP+ QK TGRAR GS R+PL  GGGV+FGPKPRD+ +K+N+KE+RL            ++ IVVEEF  +  RPKTK+ + A+ RWG+ P+  A L++ E+++
Sbjct:    6 VKNWQGEQVGETTFELRVAKEETASHIVHRALVRQLTNARQGNASTKTRAEVRGGGRKPWRQKGTGRARAGSIRSPLWRGGGVIFGPKPRDFDLKLNRKERRL--ALRTAFVGRIDDLIVVEEFSTELSRPKTKDLVAALARWGVVPESKALLILSEIAD 163          
BLAST of FC920824 vs. ExPASy Swiss-Prot
Match: RL4_CYAP7 (50S ribosomal protein L4 OS=Cyanothece sp. (strain PCC 7424) GN=rplD PE=3 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 3.250e-39
Identity = 80/162 (49.38%), Postives = 111/162 (68.52%), Query Frame = 3
Query:  120 ILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLHPKQIATLLVMEVSENV 605
            + ++ G+++G+T L+LK A  +TA  ++HRA++  + N R+G AST TR EVRGGGRKP+ QK TGRAR GSNR+PL  GGGV+FGPKPRD+S K+N+KE+RL            EN I+VE F  +  +PKTKE   A+ RWG+  K    L++ E+ EN+
Sbjct:    6 VKNWQGDEVGQTSLELKVAKEETASHILHRAVVRHLANARQGNASTKTRAEVRGGGRKPWRQKGTGRARAGSNRSPLWRGGGVIFGPKPRDYSQKMNRKERRL--ALRTALNSKAENLIIVENFAPELPQPKTKELALALTRWGVTEKDKVLLILSEIPENI 165          
BLAST of FC920824 vs. ExPASy Swiss-Prot
Match: RL4_CYAP8 (50S ribosomal protein L4 OS=Cyanothece sp. (strain PCC 8801) GN=rplD PE=3 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 5.544e-39
Identity = 80/162 (49.38%), Postives = 110/162 (67.90%), Query Frame = 3
Query:  120 ILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLHPKQIATLLVMEVSENV 605
            I ++ GE++G+  L+LK A  + A  +VHRAL+    N R+GTAST TR EVRGGGRKP+ QK TGRAR GS R+PL  GGGV FGPKP+D+++K+N+KE+RL            E+ IVVE F  +  +PKTKE + A+ RWG+   Q   L+V E+++N+
Sbjct:    6 IKNWQGEEVGQATLELKVAKEENAAHIVHRALVRQQTNARQGTASTKTRAEVRGGGRKPWRQKGTGRARAGSIRSPLWRGGGVTFGPKPKDFNVKMNRKERRL--ALRTALDSRIEDLIVVENFAEQLTQPKTKELVSALTRWGIDGNQKVVLIVSEITDNI 165          
BLAST of FC920824 vs. ExPASy Swiss-Prot
Match: RL4_MICAN (50S ribosomal protein L4 OS=Microcystis aeruginosa (strain NIES-843) GN=rplD PE=3 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 7.241e-39
Identity = 79/162 (48.77%), Postives = 111/162 (68.52%), Query Frame = 3
Query:  120 ILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLHPKQIATLLVMEVSENV 605
            + ++ GE+ G   L+LK+A P+TA+ ++HR +++ +   R+G AS+ TR EVRGGGRKP+ QK TGRAR GS R+PL  GGGV+FGPKPRD+ +K+N+KEKRL            +N IVVE F  +F +PKTKE   A+ RWG  P++   L++ E+ ENV
Sbjct:    6 VKNWQGEEAGTGTLELKTAKPETAKHLIHRVVVSHLAAARQGNASSKTRSEVRGGGRKPWRQKGTGRARAGSIRSPLWRGGGVIFGPKPRDFEVKVNRKEKRL--ALRTALISQADNFIVVESFAEQFSQPKTKELTAALSRWGASPEEKILLILTEIPENV 165          
BLAST of FC920824 vs. ExPASy Swiss-Prot
Match: RL4_ANASP (50S ribosomal protein L4 OS=Anabaena sp. (strain PCC 7120) GN=rplD PE=3 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 1.613e-38
Identity = 80/162 (49.38%), Postives = 107/162 (66.05%), Query Frame = 3
Query:  120 ILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLHPKQIATLLVMEVSENV 605
            + ++ GE+IG+   +L+ A   TA  +VHRAL+    N R+GTAST TR EVRGGGRKP+ QK TGRAR GS R+PL  GGGV+FGPKPRD+ +K+N+KE+RL            ++ I+VEEF  +  RPKTK+ + A  RWG  P+    L++ E  ENV
Sbjct:    6 VKNWQGEQIGQKTFELRVAKETTAAHIVHRALVRQQTNARQGTASTKTRAEVRGGGRKPWRQKGTGRARAGSIRSPLWRGGGVIFGPKPRDFDLKMNRKERRL--ALRTAFVSRIDDLILVEEFSNELSRPKTKDLVAAFTRWGAEPESKILLILSEFPENV 165          
The following BLAST results are available for this feature:
BLAST of FC920824 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RK4_ARATH4.812e-6767.1650S ribosomal protein L4, chloroplastic OS=Arabido... [more]
RK4_TOBAC1.771e-6163.6850S ribosomal protein L4, chloroplastic OS=Nicotia... [more]
RK4_SPIOL5.698e-6060.5050S ribosomal protein L4, chloroplastic OS=Spinaci... [more]
RL4_THEEB3.840e-4051.2350S ribosomal protein L4 OS=Thermosynechococcus el... [more]
RL4_CYAP41.117e-3951.8550S ribosomal protein L4 OS=Cyanothece sp. (strain... [more]
RL4_NOSP71.459e-3949.3850S ribosomal protein L4 OS=Nostoc punctiforme (st... [more]
RL4_CYAP73.250e-3949.3850S ribosomal protein L4 OS=Cyanothece sp. (strain... [more]
RL4_CYAP85.544e-3949.3850S ribosomal protein L4 OS=Cyanothece sp. (strain... [more]
RL4_MICAN7.241e-3948.7750S ribosomal protein L4 OS=Microcystis aeruginosa... [more]
RL4_ANASP1.613e-3849.3850S ribosomal protein L4 OS=Anabaena sp. (strain P... [more]

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Properties
Property NameValue
Genbank descriptionC32013E04EF RVDevelop1 Citrus clementina cDNA clone C32013E04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920824 ID=FC920824; Name=FC920824; organism=Citrus clementina; type=EST; length=606bp
TCCTCACTTCATCTTCCAACAAAGTTCCAAAGCCCATTCAACTCGCCAAG
CCAAATTCCCTAATAAATCTCCCGCCAAAGCCACTCATTGTCTCATCTCA
ACTCGCCTCTCCGCTCCCGATACTGTCCTTCACAGGCGAAAAAATCGGCG
AGACATACCTCGACCTAAAGTCGGCCGCACCCGACACAGCGCGTGCGGTT
GTCCACCGGGCGTTGATCACCGACATGCAGAACAAGCGACGCGGCACCGC
GTCGACTCTCACGCGCGGGGAGGTAAGAGGTGGGGGACGGAAACCCTACT
CTCAAAAGAAAACGGGTAGGGCTCGTCGCGGATCGAACAGGACCCCACTT
CGGCCCGGAGGAGGCGTCGTTTTTGGACCCAAGCCGAGGGACTGGTCGAT
TAAGATAAACAAGAAGGAGAAGCGGCTGGCGATTTCGACGGCGATAGCGA
GCGCCGCGGCGGCGGAGAACACGATTGTGGTGGAGGAATTTGATGGGAAG
TTTGAGAGGCCGAAGACGAAGGAGTTTATTGAGGCGATGAGGAGGTGGGG
TTTGCACCCGAAGCAGATAGCGACGCTCTTGGTGATGGAGGTGAGCGAGA
ATGTGG
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