FC920838

Overview
NameFC920838
Unique NameFC920838
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length703
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC920838_ssr25 microsatellite FC920838_ssr25:25..34. BLAST: Citrus ESTs to Prunus persica proteins V1
FC920838_ssr74 microsatellite FC920838_ssr74:74..89. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig14377 contig Ccv1_Contig14377:9..727. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920838 vs. ExPASy Swiss-Prot
Match: FBW2_ARATH (F-box protein FBW2 OS=Arabidopsis thaliana GN=FBW2 PE=1 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 3.573e-64
Identity = 75/115 (65.22%), Postives = 91/115 (79.13%), Query Frame = 2
Query:  350 KTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLD*XG 694
            KTL++PRS +++S V  +A +LS++TFLDLSYC KIG  A++AIGKHCK L   CRNMHPLD A  +S DDEA AIA+TMPKLKRLE+AYH +STE VLKILS C  LEFL+  G
Sbjct:  109 KTLKVPRSGLTNSGVVNVAEKLSSLTFLDLSYCCKIGPEAIQAIGKHCKSLREFCRNMHPLDVASVVSHDDEAYAIANTMPKLKRLEIAYHRVSTEGVLKILSCCVFLEFLELRG 223          

HSP 2 Score: 116.316 bits (290), Expect = 3.573e-64
Identity = 56/75 (74.67%), Postives = 63/75 (84.00%), Query Frame = 3
Query:  129 EVLTVIPGVCKSWRRAVIGPYCWQEIDIEEWSNRC-QPDHLDRMVEMLITRSSGSLRKLCVSGLHNDMMFSLIAE 350
            EVLTV+P VCK+W RAV GPYCWQEIDIE WSNR  Q DHLDRM+EMLI RS+GSLRKL V+GL ND +FS IA+
Sbjct:   29 EVLTVVPRVCKAWNRAVTGPYCWQEIDIELWSNRFHQSDHLDRMLEMLIPRSAGSLRKLSVTGLRNDSIFSFIAQ 103          
BLAST of FC920838 vs. ExPASy Swiss-Prot
Match: SKI19_ARATH (F-box protein SKIP19 OS=Arabidopsis thaliana GN=SKIP19 PE=1 SV=1)

HSP 1 Score: 55.0694 bits (131), Expect = 9.521e-12
Identity = 40/113 (35.40%), Postives = 63/113 (55.75%), Query Frame = 2
Query:  350 KTLRLPR-SEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLD 685
            ++LRL R S+++D    +   +L  +  L+LSYCS     +L  +G+ C  +  L  N HP     +   DD+A AIA TMPKL+ L++  + +S   +  IL +C+ LE LD
Sbjct:  118 RSLRLIRCSQITDDGFVEAVVKLP-LEELELSYCS-FSVESLRVVGQCCLNMKTLKLNKHP-----QKENDDDALAIAETMPKLRHLQLCGNGLSDTGLNAILDNCSNLEHLD 223          

HSP 2 Score: 35.4242 bits (80), Expect = 9.521e-12
Identity = 19/56 (33.93%), Postives = 28/56 (50.00%), Query Frame = 3
Query:  129 EVLTVIPGVCKSWRRAVIGPYCWQEIDIEEWSNRCQPDH-LDRMVEMLITRSSGSL 293
            E+L     VC+SWRR    P  W++ID+    +    D+ L+ M    + RS G L
Sbjct:   38 EILENAQKVCRSWRRVCKDPSMWRKIDMHNLGDLDDMDYNLEIMCRHAVDRSQGGL 93          
BLAST of FC920838 vs. ExPASy Swiss-Prot
Match: FBL23_ARATH (Putative F-box/LRR-repeat protein 23 OS=Arabidopsis thaliana GN=FBL23 PE=2 SV=1)

HSP 1 Score: 52.373 bits (124), Expect = 5.839e-11
Identity = 37/113 (32.74%), Postives = 59/113 (52.21%), Query Frame = 2
Query:  350 KTLRLPRS-EMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLD 685
            K+L L R   ++D  VA+   ++  + +L++SYC   G  +L  IG+ C  L  L  N  P         DD A AIA +MP+L+ L++  + ++ + +  IL  C  LE LD
Sbjct:  280 KSLGLVRCFPITDEGVAKAVSKVPLLEYLEVSYCLFSGE-SLRDIGRSCPNLKTLKLNRAPEIMFSNSGFDDNAKAIAESMPELRHLQLLGNGLTNKGLNAILDGCPHLEHLD 391          

HSP 2 Score: 35.4242 bits (80), Expect = 5.839e-11
Identity = 21/83 (25.30%), Postives = 40/83 (48.19%), Query Frame = 3
Query:  129 EVLTVIPGVCKSWRRAVIGPYCWQEIDIEEWSNRCQPDH-LDRMVEMLITRSSGSLRKLCVSGLHNDMMFSLIAEKHCDFQEV 374
            E+L     VCK W R    P  W++IDI+  ++R    + L+ M    + RS G L ++ +     + +   IA++  + + +
Sbjct:  200 EILQNAQKVCKPWHRVCKDPSMWRKIDIDNRNDRAAFKYDLESMCRHAVDRSHGGLIEIEIWYYGTNDLIMYIADRSSNLKSL 282          
The following BLAST results are available for this feature:
BLAST of FC920838 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
FBW2_ARATH3.573e-6465.22F-box protein FBW2 OS=Arabidopsis thaliana GN=FBW2... [more]
SKI19_ARATH9.521e-1235.40F-box protein SKIP19 OS=Arabidopsis thaliana GN=SK... [more]
FBL23_ARATH5.839e-1132.74Putative F-box/LRR-repeat protein 23 OS=Arabidopsi... [more]
back to top
Properties
Property NameValue
Genbank descriptionC32013F07EF RVDevelop1 Citrus clementina cDNA clone C32013F07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920838 ID=FC920838; Name=FC920838; organism=Citrus clementina; type=EST; length=703bp
GGTAGTTTTCTTTTCCTTTCTCTTTCTCTCTCTCTTTCTCTCTATCACTC
ACTGACCATTTTGCCTTTCGTTGCTCTCTCTCTCTCTCTGTCTTTTGCGT
TTGCCCTACGTTTCAGGCGGACGAACCGGAGGTATTAACCGTGATACCAG
GGGTTTGCAAATCATGGCGTAGAGCAGTAATTGGACCATATTGCTGGCAA
GAGATTGACATTGAGGAATGGAGTAATCGGTGCCAACCGGACCACCTCGA
TCGGATGGTTGAAATGTTGATCACAAGAAGTTCTGGATCTCTCCGCAAGC
TCTGTGTTTCTGGCCTGCACAATGATATGATGTTTTCCTTGATTGCAGAA
AAACATTGCGACTTCCAAGAAGTGAAATGAGTGACTCCATAGTGGCTCAG
ATAGCTGGAAGGTTGTCTGCGGTCACTTTCTTGGATTTGAGCTATTGCAG
TAAAATTGGTGCTCCTGCTTTGGAGGCCATAGGAAAACACTGTAAATTGC
TTGTGGTTCTATGCCGAAACATGCACCCATTAGATACAGCTGACAAGCTC
TCACAAGATGACGAGGCCAATGCCATTGCCTCAACGATGCCAAAACTTAA
GCGACTTGAGATGGCTTACCATGTTATCAGCACAGAAATTGTTCTTAAGA
TCCTTTCGAGCTGTGCCCTGCTAGAGTTTTTGGATTGAGNAGGTGCTGGG
ATG
back to top