FC920841

Overview
NameFC920841
Unique NameFC920841
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length698
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14954 contig Ccv1_Contig14954:702..1399. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920841 vs. ExPASy Swiss-Prot
Match: Y5614_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g56140 OS=Arabidopsis thaliana GN=At1g56140 PE=1 SV=2)

HSP 1 Score: 214.157 bits (544), Expect = 5.541e-55
Identity = 112/214 (52.34%), Postives = 141/214 (65.89%), Query Frame = 3
Query:   57 PRWFTYAELELATNRFSEANFLAEGGFVSVHRGVLPDGQVVAVKQYKLASSQGDQEFCSEVEVLSCAQHRNVVMLIGFCVEDGRRLLVYEYICNGSLDSHLYGRDRDPLEWSARRKIAVGAARGLRYLHEECRVGCIVHRDMRPNNILVTHDFEPLVGDFGLARWQPDGDMGVETRVLGTFGYLAPEYAQSGQITEKADVYSLGVVLVELITGR 698
            P  FTY+EL+ AT  F  +N L EGGF  V++G L DG+ VAVK   + S QG  +F +E+  +S  QHRN+V L G C E   RLLVYEY+ NGSLD  L+G     L+WS R +I +G ARGL YLHEE R+  IVHRD++ +NIL+     P V DFGLA+   D    + TRV GT GYLAPEYA  G +TEK DVY+ GVV +EL++GR
Sbjct:  678 PYTFTYSELKSATQDFDPSNKLGEGGFGPVYKGKLNDGREVAVKLLSVGSRQGKGQFVAEIVAISAVQHRNLVKLYGCCYEGEHRLLVYEYLPNGSLDQALFGEKTLHLDWSTRYEICLGVARGLVYLHEEARLR-IVHRDVKASNILLDSKLVPKVSDFGLAKLYDDKKTHISTRVAGTIGYLAPEYAMRGHLTEKTDVYAFGVVALELVSGR 890          
BLAST of FC920841 vs. ExPASy Swiss-Prot
Match: Y1561_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g56130 OS=Arabidopsis thaliana GN=At1g56130 PE=1 SV=2)

HSP 1 Score: 209.149 bits (531), Expect = 1.782e-53
Identity = 110/214 (51.40%), Postives = 140/214 (65.42%), Query Frame = 3
Query:   57 PRWFTYAELELATNRFSEANFLAEGGFVSVHRGVLPDGQVVAVKQYKLASSQGDQEFCSEVEVLSCAQHRNVVMLIGFCVEDGRRLLVYEYICNGSLDSHLYGRDRDPLEWSARRKIAVGAARGLRYLHEECRVGCIVHRDMRPNNILVTHDFEPLVGDFGLARWQPDGDMGVETRVLGTFGYLAPEYAQSGQITEKADVYSLGVVLVELITGR 698
            P  FTY+EL+ AT  F  +N L EGGF  V++G L DG+VVAVK   + S QG  +F +E+  +S   HRN+V L G C E   R+LVYEY+ NGSLD  L+G     L+WS R +I +G ARGL YLHEE  V  IVHRD++ +NIL+     P + DFGLA+   D    + TRV GT GYLAPEYA  G +TEK DVY+ GVV +EL++GR
Sbjct:  679 PYIFTYSELKSATQDFDPSNKLGEGGFGPVYKGNLNDGRVVAVKLLSVGSRQGKGQFVAEIVAISSVLHRNLVKLYGCCFEGEHRMLVYEYLPNGSLDQALFGDKTLHLDWSTRYEICLGVARGLVYLHEEASVR-IVHRDVKASNILLDSRLVPQISDFGLAKLYDDKKTHISTRVAGTIGYLAPEYAMRGHLTEKTDVYAFGVVALELVSGR 891          
BLAST of FC920841 vs. ExPASy Swiss-Prot
Match: Y1534_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g53420 OS=Arabidopsis thaliana GN=At1g53420 PE=2 SV=2)

HSP 1 Score: 207.223 bits (526), Expect = 6.773e-53
Identity = 101/213 (47.42%), Postives = 141/213 (66.20%), Query Frame = 3
Query:   66 FTYAELELATNRFSEANFLAEGGFVSVHRGVLPDGQVVAVKQYKLASSQGDQEFCSEVEVLSCAQHRNVVMLIGFCVEDGRRLLVYEYICNGSLDSHLYGRDRDP--LEWSARRKIAVGAARGLRYLHEECRVGCIVHRDMRPNNILVTHDFEPLVGDFGLARWQPDGDMGVETRVLGTFGYLAPEYAQSGQITEKADVYSLGVVLVELITGR 698
            F+  ++++ATN F  AN + EGGF  V++G L DG ++AVKQ    S QG++EF +E+ ++S   H N+V L G CVE G+ LLVYE++ N SL   L+G       L+W  RRKI +G ARGL YLHEE R+  IVHRD++  N+L+     P + DFGLA+   +    + TR+ GTFGY+APEYA  G +T+KADVYS G+V +E++ GR
Sbjct:  612 FSLRQIKIATNNFDSANRIGEGGFGPVYKGKLFDGTIIAVKQLSTGSKQGNREFLNEIGMISALHHPNLVKLYGCCVEGGQLLLVYEFVENNSLARALFGPQETQLRLDWPTRRKICIGVARGLAYLHEESRLK-IVHRDIKATNVLLDKQLNPKISDFGLAKLDEEDSTHISTRIAGTFGYMAPEYAMRGHLTDKADVYSFGIVALEIVHGR 823          
BLAST of FC920841 vs. ExPASy Swiss-Prot
Match: RLCK7_ARATH (Probable serine/threonine-protein kinase RLCKVII OS=Arabidopsis thaliana GN=At1g07870 PE=2 SV=1)

HSP 1 Score: 206.838 bits (525), Expect = 8.846e-53
Identity = 113/223 (50.67%), Postives = 147/223 (65.92%), Query Frame = 3
Query:   42 VFGNPPRWFTYAELELATNRFSEANFLAEGGFVSVHRGVLPD-GQVVAVKQYKLASSQGDQEFCSEVEVLSCAQHRNVVMLIGFCVEDGRRLLVYEYICNGSLDSHLY--GRDRDPLEWSARRKIAVGAARGLRYLHEECRVGCIVHRDMRPNNILVTHDFEPLVGDFGLARWQPDGD-MGVETRVLGTFGYLAPEYAQSGQITEKADVYSLGVVLVELITGR 698
            V G   + FT+ EL  AT  F    FL EGGF  V +G +    QVVA+KQ      QG +EF  EV  LS A H N+V LIGFC E  +RLLVYEY+  GSL+ HL+     + PL+W+ R KIA GAARGL YLH+      +++RD++ +NIL+  D++P + DFGLA+  P GD   V TRV+GT+GY AP+YA +GQ+T K+D+YS GVVL+ELITGR
Sbjct:   83 VTGKKAQTFTFQELAEATGNFRSDCFLGEGGFGKVFKGTIEKLDQVVAIKQLDRNGVQGIREFVVEVLTLSLADHPNLVKLIGFCAEGDQRLLVYEYMPQGSLEDHLHVLPSGKKPLDWNTRMKIAAGAARGLEYLHDR-MTPPVIYRDLKCSNILLGEDYQPKLSDFGLAKVGPSGDKTHVSTRVMGTYGYCAPDYAMTGQLTFKSDIYSFGVVLLELITGR 304          
BLAST of FC920841 vs. ExPASy Swiss-Prot
Match: Y1765_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g07650 OS=Arabidopsis thaliana GN=At1g07650 PE=1 SV=1)

HSP 1 Score: 204.912 bits (520), Expect = 3.361e-52
Identity = 100/214 (46.73%), Postives = 146/214 (68.22%), Query Frame = 3
Query:   66 FTYAELELATNRFSEANFLAEGGFVSVHRGVLPDGQVVAVKQYKLASSQGDQEFCSEVEVLSCAQHRNVVMLIGFCVEDGRRLLVYEYICNGSLDSHLYGRD---RDPLEWSARRKIAVGAARGLRYLHEECRVGCIVHRDMRPNNILVTHDFEPLVGDFGLARWQPDGDMGVETRVLGTFGYLAPEYAQSGQITEKADVYSLGVVLVELITGR 698
            FT  +++ AT+ F     + EGGF SV++G L +G+++AVKQ    S QG++EF +E+ ++S  QH N+V L G CVE  + +LVYEY+ N  L   L+G+D   R  L+WS R+KI +G A+GL +LHEE R+  IVHRD++ +N+L+  D    + DFGLA+   DG+  + TR+ GT GY+APEYA  G +TEKADVYS GVV +E+++G+
Sbjct:  666 FTLRQIKAATDNFDVTRKIGEGGFGSVYKGELSEGKLIAVKQLSAKSRQGNREFVNEIGMISALQHPNLVKLYGCCVEGNQLILVYEYLENNCLSRALFGKDESSRLKLDWSTRKKIFLGIAKGLTFLHEESRIK-IVHRDIKASNVLLDKDLNAKISDFGLAKLNDDGNTHISTRIAGTIGYMAPEYAMRGYLTEKADVYSFGVVALEIVSGK 878          
BLAST of FC920841 vs. ExPASy Swiss-Prot
Match: Y2296_ARATH (Probable receptor-like protein kinase At2g42960 OS=Arabidopsis thaliana GN=At2g42960 PE=2 SV=1)

HSP 1 Score: 204.527 bits (519), Expect = 4.390e-52
Identity = 103/214 (48.13%), Postives = 143/214 (66.82%), Query Frame = 3
Query:   63 WFTYAELELATNRFSEANFLAEGGFVSVHRGVLPDGQVVAVKQYKLASSQGDQEFCSEVEVLSCAQHRNVVMLIGFCVEDGRRLLVYEYICNGSLDSHLYG--RDRDPLEWSARRKIAVGAARGLRYLHEECRVGCIVHRDMRPNNILVTHDFEPLVGDFGLARWQPDGDMGVETRVLGTFGYLAPEYAQSGQITEKADVYSLGVVLVELITGR 698
            WFT  +LELATNRF+  N L EGG+  V+RG L +G  VAVK+      Q ++EF  EVE +   +H+N+V L+G+C+E   R+LVYEY+ +G+L+  L+G  R    L W AR KI  G A+ L YLHE      +VHRD++ +NIL+  +F   + DFGLA+    G+  + TRV+GTFGY+APEYA +G + EK+D+YS GV+L+E ITGR
Sbjct:  170 WFTLRDLELATNRFAPVNVLGEGGYGVVYRGKLVNGTEVAVKKLLNNLGQAEKEFRVEVEAIGHVRHKNLVRLLGYCIEGVHRMLVYEYVNSGNLEQWLHGAMRQHGNLTWEARMKIITGTAQALAYLHEAIEPK-VVHRDIKASNILIDDEFNAKLSDFGLAKLLDSGESHITTRVMGTFGYVAPEYANTGLLNEKSDIYSFGVLLLEAITGR 382          
BLAST of FC920841 vs. ExPASy Swiss-Prot
Match: Y1105_ARATH (Probable receptor-like protein kinase At1g11050 OS=Arabidopsis thaliana GN=At1g11050 PE=2 SV=1)

HSP 1 Score: 202.986 bits (515), Expect = 1.277e-51
Identity = 108/219 (49.32%), Postives = 143/219 (65.30%), Query Frame = 3
Query:   63 WFTYAELELATNRFSEANFLAEGGFVSVHRGVLPDGQVVAVKQYKLASSQGDQEFCSEVEVLSCAQHRNVVMLIGFCVED----GRRLLVYEYICNGSLDSHLYGRDRD---PLEWSARRKIAVGAARGLRYLHEECRVGCIVHRDMRPNNILVTHDFEPLVGDFGLARWQPDGDMGVETRVLGTFGYLAPEYAQSGQITEKADVYSLGVVLVELITGR 698
            WF   ELE ATN FS+ NF+  GGF  V++GVLPDG V+AVK+   +  QGD EF +EVE++S  +HRN+V L G  + D     +R LVY+Y+ NG+LD HL+ R      PL W  R+ I +  A+GL YLH   +   I HRD++  NIL+  D    V DFGLA+   +G+  + TRV GT GYLAPEYA  GQ+TEK+DVYS GVV++E++ GR
Sbjct:  282 WFKIEELEKATNNFSQKNFIGRGGFGFVYKGVLPDGSVIAVKKVIESEFQGDAEFRNEVEIISNLKHRNLVPLRGCSMVDDDSESQRYLVYDYMSNGNLDDHLFPRGETTKMPLSWPQRKSIILDVAKGLAYLHYGVKPA-IYHRDIKGTNILLDVDMRARVADFGLAKQSREGESHLTTRVAGTHGYLAPEYALYGQLTEKSDVYSFGVVILEIMCGR 499          
BLAST of FC920841 vs. ExPASy Swiss-Prot
Match: Y5343_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g53430 OS=Arabidopsis thaliana GN=At1g53430 PE=1 SV=1)

HSP 1 Score: 201.83 bits (512), Expect = 2.846e-51
Identity = 101/213 (47.42%), Postives = 140/213 (65.73%), Query Frame = 3
Query:   66 FTYAELELATNRFSEANFLAEGGFVSVHRGVLPDGQVVAVKQYKLASSQGDQEFCSEVEVLSCAQHRNVVMLIGFCVEDGRRLLVYEYICNGSLDSHLYG--RDRDPLEWSARRKIAVGAARGLRYLHEECRVGCIVHRDMRPNNILVTHDFEPLVGDFGLARWQPDGDMGVETRVLGTFGYLAPEYAQSGQITEKADVYSLGVVLVELITGR 698
            FT  +++ ATN F   N + EGGF  V++GVL DG  +AVKQ    S QG++EF +E+ ++S  QH N+V L G C+E    LLVYEY+ N SL   L+G  + R  L+WS R KI +G A+GL YLHEE R+  IVHRD++  N+L+       + DFGLA+   D +  + TR+ GT GY+APEYA  G +T+KADVYS GVV +E+++G+
Sbjct:  657 FTLKQIKRATNNFDPENKIGEGGFGPVYKGVLADGMTIAVKQLSSKSKQGNREFVTEIGMISALQHPNLVKLYGCCIEGKELLLVYEYLENNSLARALFGTEKQRLHLDWSTRNKICIGIAKGLAYLHEESRLK-IVHRDIKATNVLLDLSLNAKISDFGLAKLNDDENTHISTRIAGTIGYMAPEYAMRGYLTDKADVYSFGVVCLEIVSGK 868          
BLAST of FC920841 vs. ExPASy Swiss-Prot
Match: PBS1_ARATH (Serine/threonine-protein kinase PBS1 OS=Arabidopsis thaliana GN=PBS1 PE=1 SV=1)

HSP 1 Score: 200.29 bits (508), Expect = 8.279e-51
Identity = 108/215 (50.23%), Postives = 144/215 (66.98%), Query Frame = 3
Query:   66 FTYAELELATNRFSEANFLAEGGFVSVHRGVLPD-GQVVAVKQYKLASSQGDQEFCSEVEVLSCAQHRNVVMLIGFCVEDGRRLLVYEYICNGSLDSHLYG--RDRDPLEWSARRKIAVGAARGLRYLHEECRVGCIVHRDMRPNNILVTHDFEPLVGDFGLARWQPDGDMG-VETRVLGTFGYLAPEYAQSGQITEKADVYSLGVVLVELITGR 698
            F + EL  AT  F    FL EGGF  V++G L   GQVVAVKQ      QG++EF  EV +LS   H N+V LIG+C +  +RLLVYE++  GSL+ HL+    D++ L+W+ R KIA GAA+GL +LH++     +++RD + +NIL+   F P + DFGLA+  P GD   V TRV+GT+GY APEYA +GQ+T K+DVYS GVV +ELITGR
Sbjct:   74 FAFRELAAATMNFHPDTFLGEGGFGRVYKGRLDSTGQVVAVKQLDRNGLQGNREFLVEVLMLSLLHHPNLVNLIGYCADGDQRLLVYEFMPLGSLEDHLHDLPPDKEALDWNMRMKIAAGAAKGLEFLHDKANPP-VIYRDFKSSNILLDEGFHPKLSDFGLAKLGPTGDKSHVSTRVMGTYGYCAPEYAMTGQLTVKSDVYSFGVVFLELITGR 287          
BLAST of FC920841 vs. ExPASy Swiss-Prot
Match: Y5344_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g53440 OS=Arabidopsis thaliana GN=At1g53440 PE=1 SV=2)

HSP 1 Score: 199.904 bits (507), Expect = 1.081e-50
Identity = 99/213 (46.48%), Postives = 140/213 (65.73%), Query Frame = 3
Query:   66 FTYAELELATNRFSEANFLAEGGFVSVHRGVLPDGQVVAVKQYKLASSQGDQEFCSEVEVLSCAQHRNVVMLIGFCVEDGRRLLVYEYICNGSLDSHLYG--RDRDPLEWSARRKIAVGAARGLRYLHEECRVGCIVHRDMRPNNILVTHDFEPLVGDFGLARWQPDGDMGVETRVLGTFGYLAPEYAQSGQITEKADVYSLGVVLVELITGR 698
            FT  +++ ATN F   N + EGGF  V++GVL DG  +AVKQ    S QG++EF +E+ ++S  QH N+V L G C+E    LLVYEY+ N SL   L+G  + R  L+WS R K+ +G A+GL YLHEE R+  IVHRD++  N+L+       + DFGLA+   + +  + TR+ GT GY+APEYA  G +T+KADVYS GVV +E+++G+
Sbjct:  655 FTLKQIKRATNNFDPENKIGEGGFGPVYKGVLADGMTIAVKQLSSKSKQGNREFVTEIGMISALQHPNLVKLYGCCIEGKELLLVYEYLENNSLARALFGTEKQRLHLDWSTRNKVCIGIAKGLAYLHEESRLK-IVHRDIKATNVLLDLSLNAKISDFGLAKLDEEENTHISTRIAGTIGYMAPEYAMRGYLTDKADVYSFGVVCLEIVSGK 866          
The following BLAST results are available for this feature:
BLAST of FC920841 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
Y5614_ARATH5.541e-5552.34Probable LRR receptor-like serine/threonine-protei... [more]
Y1561_ARATH1.782e-5351.40Probable LRR receptor-like serine/threonine-protei... [more]
Y1534_ARATH6.773e-5347.42Probable LRR receptor-like serine/threonine-protei... [more]
RLCK7_ARATH8.846e-5350.67Probable serine/threonine-protein kinase RLCKVII O... [more]
Y1765_ARATH3.361e-5246.73Probable LRR receptor-like serine/threonine-protei... [more]
Y2296_ARATH4.390e-5248.13Probable receptor-like protein kinase At2g42960 OS... [more]
Y1105_ARATH1.277e-5149.32Probable receptor-like protein kinase At1g11050 OS... [more]
Y5343_ARATH2.846e-5147.42Probable LRR receptor-like serine/threonine-protei... [more]
PBS1_ARATH8.279e-5150.23Serine/threonine-protein kinase PBS1 OS=Arabidopsi... [more]
Y5344_ARATH1.081e-5046.48Probable LRR receptor-like serine/threonine-protei... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC32013F10EF RVDevelop1 Citrus clementina cDNA clone C32013F10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920841 ID=FC920841; Name=FC920841; organism=Citrus clementina; type=EST; length=698bp
GTCCTCCTCCATTGTGTTCAACATGTCAGCACAAGGCACCTGTATTTGGT
AATCCTCCGAGGTGGTTCACCTATGCTGAATTGGAGCTTGCTACAAATAG
ATTTTCAGAAGCAAATTTCTTAGCCGAAGGTGGATTTGTGTCTGTTCACC
GAGGTGTTCTACCAGATGGCCAGGTTGTTGCCGTCAAGCAATATAAATTG
GCTAGTTCTCAAGGTGATCAAGAATTTTGCTCAGAAGTTGAGGTTTTAAG
TTGTGCACAACATCGCAATGTTGTGATGTTGATTGGATTCTGTGTGGAGG
ATGGGAGGAGATTGCTGGTTTATGAGTATATTTGCAATGGGTCCTTGGAT
TCCCATCTTTATGGACGTGATCGAGATCCACTGGAATGGTCTGCAAGGCG
AAAAATTGCGGTTGGAGCAGCTCGAGGGTTGCGATACCTTCATGAAGAAT
GTAGAGTGGGTTGTATCGTCCACCGTGATATGCGCCCTAACAACATTCTG
GTCACCCATGATTTTGAGCCACTGGTTGGGGATTTTGGACTAGCAAGATG
GCAACCAGATGGAGATATGGGAGTGGAAACAAGAGTACTCGGAACATTTG
GGTATTTAGCTCCAGAATATGCTCAGAGTGGTCAAATCACAGAAAAAGCT
GACGTCTATTCCCTTGGGGTAGTATTGGTGGAGCTCATTACNGGAAGG
back to top