FC920843

Overview
NameFC920843
Unique NameFC920843
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length594
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15172 contig Ccv1_Contig15172:211..804. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920843 vs. ExPASy Swiss-Prot
Match: ODPB_ARATH (Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Arabidopsis thaliana GN=PDH2 PE=1 SV=2)

HSP 1 Score: 355.91 bits (912), Expect = 8.592e-98
Identity = 176/195 (90.26%), Postives = 186/195 (95.38%), Query Frame = 2
Query:    8 KQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSPGQISVPIVFRRPNGAAAGVGAQHSQCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFL*NELLYGESFPVSAEDLDSSFCPPI 592
            K+M VR+ALNSA+DEEMSADPKVF+MGEEVG+YQGAYKI+KGLLEKYGPERV DTPITEAGFTGIGVGAAY GLKPVVEFMTFNFSMQAIDHIINSAAKSNYMS GQI+VPIVFR PNGAAAGVGAQHSQCYAAWYASVPGLKVL+PYS+EDARGLLKAAIRDPDPVVFL NELLYGESFP+S E LDSSFC PI
Sbjct:   34 KEMTVRDALNSAIDEEMSADPKVFVMGEEVGQYQGAYKITKGLLEKYGPERVYDTPITEAGFTGIGVGAAYAGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSAGQINVPIVFRGPNGAAAGVGAQHSQCYAAWYASVPGLKVLAPYSAEDARGLLKAAIRDPDPVVFLENELLYGESFPISEEALDSSFCLPI 228          
BLAST of FC920843 vs. ExPASy Swiss-Prot
Match: ODPB_PEA (Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 342.428 bits (877), Expect = 9.831e-94
Identity = 174/195 (89.23%), Postives = 180/195 (92.31%), Query Frame = 2
Query:    8 KQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSPGQISVPIVFRRPNGAAAGVGAQHSQCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFL*NELLYGESFPVSAEDLDSSFCPPI 592
            KQM VR+ALNSALD EMSAD KVFLMGEEVGEYQGAYK++KGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMS GQISVPIVFR  NG AAGVGAQHS CYA+WY S PGLKVL P+S+EDARGLLKAAIRDPDPVVFL NELLYGESFPVSAE LDSSF  PI
Sbjct:   24 KQMTVRDALNSALDVEMSADSKVFLMGEEVGEYQGAYKVTKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSAGQISVPIVFRGLNGDAAGVGAQHSHCYASWYGSCPGLKVLVPHSAEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFWLPI 218          
BLAST of FC920843 vs. ExPASy Swiss-Prot
Match: ODPB_SCHPO (Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Schizosaccharomyces pombe GN=pdb1 PE=2 SV=1)

HSP 1 Score: 279.256 bits (713), Expect = 1.022e-74
Identity = 134/195 (68.72%), Postives = 163/195 (83.59%), Query Frame = 2
Query:    5 VKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSPGQISVPIVFRRPNGAAAGVGAQHSQCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFL*NELLYGESFPVSAEDLDSSFCPP 589
            VK+M VR+ALNSA++EEM  D +VFL+GEEV +Y GAYKIS+GLL+K+GP+RV+DTPITE GFTG+  GAA+ GL+P+ EFMTFNFSMQAIDHI+NSAA++ YMS G  + PIVFR PNG AA V AQHSQ +A WY S+PGLKV+SPYS+EDARGLLKAAIRDP+PVV L NE+LYG++FP+S E L   F  P
Sbjct:   35 VKEMTVRDALNSAMEEEMKRDDRVFLIGEEVAQYNGAYKISRGLLDKFGPKRVIDTPITEMGFTGLATGAAFAGLRPICEFMTFNFSMQAIDHIVNSAARTLYMSGGIQACPIVFRGPNGPAAAVAAQHSQHFAPWYGSIPGLKVVSPYSAEDARGLLKAAIRDPNPVVVLENEILYGKTFPISKEALSEDFVLP 229          
BLAST of FC920843 vs. ExPASy Swiss-Prot
Match: ODPB_CAEEL (Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Caenorhabditis elegans GN=C04C3.3 PE=1 SV=2)

HSP 1 Score: 275.404 bits (703), Expect = 1.476e-73
Identity = 136/193 (70.47%), Postives = 159/193 (82.38%), Query Frame = 2
Query:   14 MMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSPGQISVPIVFRRPNGAAAGVGAQHSQCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFL*NELLYGESFPVSAEDLDSSFCPPI 592
            M VR+ALN A+DEE+  D +VFLMGEEV +Y GAYKISKGL +K+G +RV+DTPITE GF GI VGAA+ GL+P+ EFMTFNFSMQAID IINSAAK+ YMS G++ VPIVFR PNGAAAGV AQHSQ ++AWYA  PGLKV+ PYS+EDA+GLLKAAIRD +PVVFL NE+LYG+SFPV  E L   F  PI
Sbjct:   25 MTVRDALNQAMDEEIKRDDRVFLMGEEVAQYDGAYKISKGLWKKHGDKRVVDTPITEMGFAGIAVGAAFAGLRPICEFMTFNFSMQAIDQIINSAAKTYYMSAGRVPVPIVFRGPNGAAAGVAAQHSQDFSAWYAHCPGLKVVCPYSAEDAKGLLKAAIRDDNPVVFLENEILYGQSFPVGDEVLSDDFVVPI 217          
BLAST of FC920843 vs. ExPASy Swiss-Prot
Match: ODPB_YEAST (Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Saccharomyces cerevisiae GN=PDB1 PE=1 SV=2)

HSP 1 Score: 274.633 bits (701), Expect = 2.517e-73
Identity = 135/194 (69.59%), Postives = 158/194 (81.44%), Query Frame = 2
Query:    8 KQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSPGQISVPIVFRRPNGAAAGVGAQHSQCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFL*NELLYGESFPVSAEDLDSSFCPP 589
            K M VREALNSA+ EE+  D  VFL+GEEV +Y GAYK+SKGLL+++G  RV+DTPITE GFTG+ VGAA  GLKP+VEFM+FNFSMQAIDH++NSAAK++YMS G     +VFR PNGAA GVGAQHSQ ++ WY S+PGLKVL PYS+EDARGLLKAAIRDP+PVVFL NELLYGESF +S E L   F  P
Sbjct:   37 KTMTVREALNSAMAEELDRDDDVFLIGEEVAQYNGAYKVSKGLLDRFGERRVVDTPITEYGFTGLAVGAALKGLKPIVEFMSFNFSMQAIDHVVNSAAKTHYMSGGTQKCQMVFRGPNGAAVGVGAQHSQDFSPWYGSIPGLKVLVPYSAEDARGLLKAAIRDPNPVVFLENELLYGESFEISEEALSPEFTLP 230          
BLAST of FC920843 vs. ExPASy Swiss-Prot
Match: ODPB_DICDI (Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Dictyostelium discoideum GN=pdhB PE=1 SV=1)

HSP 1 Score: 266.159 bits (679), Expect = 8.953e-71
Identity = 125/195 (64.10%), Postives = 161/195 (82.56%), Query Frame = 2
Query:    8 KQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSPGQISVPIVFRRPNGAAAGVGAQHSQCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFL*NELLYGESFPVSAEDLDSSFCPPI 592
            K++ VR+A+NSALDEE++ D KVF+MGEEV +Y GAYKI+KGL +KYG +R++DTPITEAGF GIGVGAA  G +P++EFMTFNF+MQAIDHIINS+AK++YMS G++  PIV+R PNG    VGAQHSQC+AAWY SVPGLKV++P+S+ D RGLLK+AIRD +PVV+L +ELLY   F +S ++ D  +  PI
Sbjct:   27 KEVTVRDAINSALDEELARDEKVFIMGEEVAQYNGAYKITKGLFDKYGGDRIIDTPITEAGFAGIGVGAAMAGTRPIIEFMTFNFAMQAIDHIINSSAKTHYMSGGKVFNPIVWRGPNGPPTAVGAQHSQCFAAWYGSVPGLKVVAPWSAADHRGLLKSAIRDDNPVVYLESELLYNYKFDLSDQEQDKEYLVPI 221          
BLAST of FC920843 vs. ExPASy Swiss-Prot
Match: ODPB_RHIME (Pyruvate dehydrogenase E1 component subunit beta OS=Rhizobium meliloti GN=pdhB PE=3 SV=2)

HSP 1 Score: 263.077 bits (671), Expect = 7.580e-70
Identity = 127/184 (69.02%), Postives = 154/184 (83.70%), Query Frame = 2
Query:   14 MMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSPGQISVPIVFRRPNGAAAGVGAQHSQCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFL*NELLYGESFPVSAED 565
            M VREAL  A+ EEM A+  VF+MGEEV EYQGAYK+++GLL+++G  RV+DTPITE GF G+GVGAA  GL+P+VEFMTFNF+MQAID IINSAAK+ YMS GQ+  PIVFR P+GAAA V AQHSQCYAAWY+ +PGLKV+ PY++ DA+GLLKAAIRDP+PV+FL NE+LYG+SF V   D
Sbjct:  138 MTVREALRDAMAEEMRANEDVFVMGEEVAEYQGAYKVTQGLLQEFGARRVVDTPITEHGFAGVGVGAAMTGLRPIVEFMTFNFAMQAIDQIINSAAKTLYMSGGQMGAPIVFRGPSGAAARVAAQHSQCYAAWYSHIPGLKVVMPYTAADAKGLLKAAIRDPNPVIFLENEILYGQSFEVPKLD 321          
BLAST of FC920843 vs. ExPASy Swiss-Prot
Match: ODPB_MOUSE (Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Mus musculus GN=Pdhb PE=1 SV=1)

HSP 1 Score: 259.996 bits (663), Expect = 6.416e-69
Identity = 125/194 (64.43%), Postives = 154/194 (79.38%), Query Frame = 2
Query:   11 QMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSPGQISVPIVFRRPNGAAAGVGAQHSQCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFL*NELLYGESFPVSAEDLDSSFCPPI 592
            Q+ VREA+N  +DEE+  D KVFL+GEEV +Y GAYK+S+GL +KYG +R++DTPI+E GF GI VGAA  GL+P+ EFMTFNFSMQAID +INSAAK+ YMS G   VPIVFR PNGA+AGV AQHSQC+AAWY   PGLKV+SP++SEDA+GL+K+AIRD +PVV L NEL+YG +F + AE     F  PI
Sbjct:   32 QLTVREAINQGMDEELERDEKVFLLGEEVAQYDGAYKVSRGLWKKYGDKRIIDTPISEMGFAGIAVGAAMAGLRPICEFMTFNFSMQAIDQVINSAAKTYYMSAGLQPVPIVFRGPNGASAGVAAQHSQCFAAWYGHCPGLKVVSPWNSEDAKGLIKSAIRDNNPVVMLENELMYGVAFELPAEAQSKDFLIPI 225          
BLAST of FC920843 vs. ExPASy Swiss-Prot
Match: ODPB_BOVIN (Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Bos taurus GN=PDHB PE=1 SV=2)

HSP 1 Score: 259.996 bits (663), Expect = 6.416e-69
Identity = 126/194 (64.95%), Postives = 154/194 (79.38%), Query Frame = 2
Query:   11 QMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSPGQISVPIVFRRPNGAAAGVGAQHSQCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFL*NELLYGESFPVSAEDLDSSFCPPI 592
            Q+ VREA+N  +DEE+  D KVFL+GEEV +Y GAYK+S+GL +KYG +R++DTPI+E GF GI VGAA  GL+P+ EFMTFNFSMQAID +INSAAK+ YMS G  SVPIVFR PNGA+AGV AQHSQC+AAWY   PGLKV+SP+SSEDA+GL+K+AIRD +PVV L NEL+YG  F + +E     F  PI
Sbjct:   32 QVTVREAINQGMDEELERDEKVFLLGEEVAQYDGAYKVSRGLWKKYGDKRIIDTPISEMGFAGIAVGAAMAGLRPICEFMTFNFSMQAIDQVINSAAKTYYMSGGLQSVPIVFRGPNGASAGVAAQHSQCFAAWYGHCPGLKVVSPWSSEDAKGLIKSAIRDNNPVVVLENELMYGVPFELPSEAQSKDFLIPI 225          
BLAST of FC920843 vs. ExPASy Swiss-Prot
Match: ODPB_RAT (Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Rattus norvegicus GN=Pdhb PE=1 SV=2)

HSP 1 Score: 258.84 bits (660), Expect = 1.429e-68
Identity = 124/194 (63.92%), Postives = 153/194 (78.87%), Query Frame = 2
Query:   11 QMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSPGQISVPIVFRRPNGAAAGVGAQHSQCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFL*NELLYGESFPVSAEDLDSSFCPPI 592
            Q+ VREA+N  +DEE+  D KVFL+GEEV +Y GAYK+S+GL +KYG +R++DTPI+E GF GI VGAA  GL+P+ EFMTFNFSMQAID +INSAAK+ YMS G   VPIVFR PNGA+AGV AQHSQC+AAWY   PGLKV+SP++SEDA+GL+K+AIRD +PVV L NEL+YG +F +  E     F  PI
Sbjct:   32 QLTVREAINQGMDEELERDEKVFLLGEEVAQYDGAYKVSRGLWKKYGDKRIIDTPISEMGFAGIAVGAAMAGLRPICEFMTFNFSMQAIDQVINSAAKTYYMSAGLQPVPIVFRGPNGASAGVAAQHSQCFAAWYGHCPGLKVVSPWNSEDAKGLIKSAIRDDNPVVMLENELMYGVAFELPTEAQSKDFLIPI 225          
The following BLAST results are available for this feature:
BLAST of FC920843 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 57
Match NameE-valueIdentityDescription
ODPB_ARATH8.592e-9890.26Pyruvate dehydrogenase E1 component subunit beta, ... [more]
ODPB_PEA9.831e-9489.23Pyruvate dehydrogenase E1 component subunit beta, ... [more]
ODPB_SCHPO1.022e-7468.72Pyruvate dehydrogenase E1 component subunit beta, ... [more]
ODPB_CAEEL1.476e-7370.47Pyruvate dehydrogenase E1 component subunit beta, ... [more]
ODPB_YEAST2.517e-7369.59Pyruvate dehydrogenase E1 component subunit beta, ... [more]
ODPB_DICDI8.953e-7164.10Pyruvate dehydrogenase E1 component subunit beta, ... [more]
ODPB_RHIME7.580e-7069.02Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_MOUSE6.416e-6964.43Pyruvate dehydrogenase E1 component subunit beta, ... [more]
ODPB_BOVIN6.416e-6964.95Pyruvate dehydrogenase E1 component subunit beta, ... [more]
ODPB_RAT1.429e-6863.92Pyruvate dehydrogenase E1 component subunit beta, ... [more]

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Properties
Property NameValue
Genbank descriptionC32013F12EF RVDevelop1 Citrus clementina cDNA clone C32013F12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920843 ID=FC920843; Name=FC920843; organism=Citrus clementina; type=EST; length=594bp
CCCAGTTAAACAGATGATGGTGAGAGAGGCTTTAAACTCTGCTCTTGATG
AGGAGATGTCTGCTGATCCTAAAGTTTTCTTGATGGGAGAAGAGGTTGGG
GAATATCAGGGTGCTTACAAGATATCCAAAGGGCTATTGGAGAAATATGG
CCCTGAGAGAGTTCTTGATACCCCGATCACTGAGGCTGGTTTTACTGGGA
TTGGAGTTGGTGCTGCATACTATGGTTTGAAGCCTGTTGTGGAATTCATG
ACATTTAACTTCTCTATGCAGGCAATTGATCACATCATTAATTCTGCTGC
AAAATCAAATTACATGTCTCCTGGCCAAATATCGGTTCCTATCGTCTTCA
GAAGGCCTAATGGTGCTGCTGCCGGAGTGGGTGCCCAACACTCTCAATGT
TATGCAGCATGGTATGCCTCAGTCCCTGGGTTGAAAGTACTGAGCCCATA
CAGTTCTGAAGATGCTCGTGGACTGCTAAAAGCTGCTATAAGGGATCCGG
ATCCTGTTGTTTTTCTTTGAAATGAGCTGTTATATGGTGAGTCATTCCCG
GTATCAGCTGAAGATCTTGATTCCAGTTTTTGCCCTCCAATTGG
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