FC920844

Overview
NameFC920844
Unique NameFC920844
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length674
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15182 contig Ccv1_Contig15182:159..833. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920844 vs. ExPASy Swiss-Prot
Match: DCE_SOLLC (Glutamate decarboxylase OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 367.851 bits (943), Expect = 7.846e-103
Identity = 175/214 (81.78%), Postives = 193/214 (90.19%), Query Frame = 3
Query:    3 FASRYVRPAIPRFKMPDNSMPKEAAYQVINDELMLDGNPRLNLASFVTTWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFXXXXXXXXXXXGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLPKR 644
            FASRYV+  +P+FKMP  SMPKEAAYQ++NDELMLDGNPRLNLASFV+TWMEPECDKL+M+SINKNYVDMDEYPVTTELQNRCVNM+AHLF+ PV DD+TAVGVGTVGSSEAIMLAGLAFKRKWQ KRK +GKP+DKPNIVTGANVQVCWEKFARYF           GYYVM+P KAVE+VDENTICVAAILGSTLTGEFEDVKLL++LL K+
Sbjct:   19 FASRYVQEPLPKFKMPKKSMPKEAAYQIVNDELMLDGNPRLNLASFVSTWMEPECDKLIMSSINKNYVDMDEYPVTTELQNRCVNMLAHLFHAPVGDDETAVGVGTVGSSEAIMLAGLAFKRKWQSKRKAEGKPFDKPNIVTGANVQVCWEKFARYFEVELKEVKLKEGYYVMDPAKAVEIVDENTICVAAILGSTLTGEFEDVKLLNELLTKK 232          

HSP 2 Score: 26.9498 bits (58), Expect = 7.846e-103
Identity = 9/11 (81.82%), Postives = 11/11 (100.00%), Query Frame = 2
Query:  638 KKNEETGWDTP 670
            KKN+ETGW+TP
Sbjct:  231 KKNKETGWETP 241          
BLAST of FC920844 vs. ExPASy Swiss-Prot
Match: DCE_PETHY (Glutamate decarboxylase OS=Petunia hybrida GN=GAD PE=1 SV=1)

HSP 1 Score: 364.77 bits (935), Expect = 6.587e-102
Identity = 178/214 (83.18%), Postives = 190/214 (88.79%), Query Frame = 3
Query:    3 FASRYVRPAIPRFKMPDNSMPKEAAYQVINDELMLDGNPRLNLASFVTTWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFXXXXXXXXXXXGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLPKR 644
            FASRYVR ++PRFKMPDNS+PKEAAYQ+INDELMLDGNPRLNLASFVTTWMEPECDKL+M SINKNYVDMDEYPVTTELQNRCVNMIAHLFN P+ D +TAVGVGTVGSSEAIMLAGLAFKRKWQ K K QGKP DKPNIVTGANVQVCWEKFARYF           GYYVM+P KAVE+VDENTICVAAILGSTL GEFEDVK L+DLL ++
Sbjct:   18 FASRYVRTSLPRFKMPDNSIPKEAAYQIINDELMLDGNPRLNLASFVTTWMEPECDKLMMDSINKNYVDMDEYPVTTELQNRCVNMIAHLFNAPLEDGETAVGVGTVGSSEAIMLAGLAFKRKWQNKMKAQGKPCDKPNIVTGANVQVCWEKFARYFEVELKEVKLSEGYYVMDPEKAVEMVDENTICVAAILGSTLNGEFEDVKRLNDLLVEK 231          

HSP 2 Score: 26.9498 bits (58), Expect = 6.587e-102
Identity = 9/11 (81.82%), Postives = 11/11 (100.00%), Query Frame = 2
Query:  638 KKNEETGWDTP 670
            +KN+ETGWDTP
Sbjct:  230 EKNKETGWDTP 240          
BLAST of FC920844 vs. ExPASy Swiss-Prot
Match: DCE1_ARATH (Glutamate decarboxylase 1 OS=Arabidopsis thaliana GN=GAD1 PE=1 SV=2)

HSP 1 Score: 364.385 bits (934), Expect = 8.593e-102
Identity = 175/214 (81.78%), Postives = 193/214 (90.19%), Query Frame = 3
Query:    3 FASRYVRPAIPRFKMPDNSMPKEAAYQVINDELMLDGNPRLNLASFVTTWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFXXXXXXXXXXXGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLPKR 644
            FASRYVR ++PRFKMP+NS+PKEAAYQ+INDELMLDGNPRLNLASFVTTWMEPECDKL+M+SINKNYVDMDEYPVTTELQNRCVNMIAHLFN P+ + +TAVGVGTVGSSEAIMLAGLAFKRKWQ KRK +GKP DKPNIVTGANVQVCWEKFARYF           GYYVM+P +AV++VDENTICVAAILGSTL GEFEDVKLL+DLL ++
Sbjct:   18 FASRYVRTSLPRFKMPENSIPKEAAYQIINDELMLDGNPRLNLASFVTTWMEPECDKLIMSSINKNYVDMDEYPVTTELQNRCVNMIAHLFNAPLEEAETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPVDKPNIVTGANVQVCWEKFARYFEVELKEVKLSEGYYVMDPQQAVDMVDENTICVAAILGSTLNGEFEDVKLLNDLLVEK 231          

HSP 2 Score: 26.9498 bits (58), Expect = 8.593e-102
Identity = 9/11 (81.82%), Postives = 11/11 (100.00%), Query Frame = 2
Query:  638 KKNEETGWDTP 670
            +KN+ETGWDTP
Sbjct:  230 EKNKETGWDTP 240          
BLAST of FC920844 vs. ExPASy Swiss-Prot
Match: DCE2_ARATH (Glutamate decarboxylase 2 OS=Arabidopsis thaliana GN=GAD2 PE=1 SV=1)

HSP 1 Score: 348.206 bits (892), Expect = 2.743e-97
Identity = 167/214 (78.04%), Postives = 186/214 (86.92%), Query Frame = 3
Query:    3 FASRYVRPAIPRFKMPDNSMPKEAAYQVINDELMLDGNPRLNLASFVTTWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFXXXXXXXXXXXGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLPKR 644
            F SRYVR  +P++++ +NS+PK+AAYQ+I DELMLDGNPRLNLASFVTTWMEPECDKL+M SINKNYVDMDEYPVTTELQNRCVN+IA LFN P+ + +TAVGVGTVGSSEAIMLAGLAFKRKWQ KRK +GKPYDKPNIVTGANVQVCWEKFARYF           GYYVM+P KA E+VDENTICVAAILGSTL GEFEDVK L+DLL K+
Sbjct:   17 FGSRYVRTTLPKYEIGENSIPKDAAYQIIKDELMLDGNPRLNLASFVTTWMEPECDKLIMDSINKNYVDMDEYPVTTELQNRCVNIIARLFNAPLEESETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVNLSEGYYVMDPDKAAEMVDENTICVAAILGSTLNGEFEDVKRLNDLLVKK 230          

HSP 2 Score: 28.1054 bits (61), Expect = 2.743e-97
Identity = 10/11 (90.91%), Postives = 11/11 (100.00%), Query Frame = 2
Query:  638 KKNEETGWDTP 670
            KKNEETGW+TP
Sbjct:  229 KKNEETGWNTP 239          
BLAST of FC920844 vs. ExPASy Swiss-Prot
Match: DCEB_SHIFL (Glutamate decarboxylase beta OS=Shigella flexneri GN=gadB PE=2 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 3.358e-46
Identity = 93/213 (43.66%), Postives = 128/213 (60.09%), Query Frame = 3
Query:    3 FASRYVRPAIPRFKMPDNSMPKEAAYQVINDELMLDGNPRLNLASFVTTWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFXXXXXXXXXXXGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLPK 641
            F ++ +       + P + M  + A+Q+INDEL LDGN R NLA+F  TW +    KL+  SINKN++D +EYP +  +  RCVNM+A L++ P   +  AVG  T+GSSEA ML G+A K +W+++ +  GKP DKPN+V G  VQ+CW KFARY+           G   M+P + +E  DENTI V    G T TG +E  + LHD L K
Sbjct:   18 FGAKSISTIAESKRFPLHEMRDDVAFQIINDELYLDGNARQNLATFCQTWDDENVHKLMDLSINKNWIDKEEYPQSAAIDLRCVNMVADLWHAPAPKNGQAVGTNTIGSSEACMLGGMAMKWRWRKRMEAAGKPTDKPNLVCGP-VQICWHKFARYWDVELREIPMRPGQLFMDPKRMIEACDENTIGVVPTFGVTYTGNYEFPQPLHDALDK 229          
BLAST of FC920844 vs. ExPASy Swiss-Prot
Match: DCEB_ECOLI (Glutamate decarboxylase beta OS=Escherichia coli (strain K12) GN=gadB PE=1 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 3.358e-46
Identity = 93/213 (43.66%), Postives = 128/213 (60.09%), Query Frame = 3
Query:    3 FASRYVRPAIPRFKMPDNSMPKEAAYQVINDELMLDGNPRLNLASFVTTWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFXXXXXXXXXXXGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLPK 641
            F ++ +       + P + M  + A+Q+INDEL LDGN R NLA+F  TW +    KL+  SINKN++D +EYP +  +  RCVNM+A L++ P   +  AVG  T+GSSEA ML G+A K +W+++ +  GKP DKPN+V G  VQ+CW KFARY+           G   M+P + +E  DENTI V    G T TG +E  + LHD L K
Sbjct:   18 FGAKSISTIAESKRFPLHEMRDDVAFQIINDELYLDGNARQNLATFCQTWDDENVHKLMDLSINKNWIDKEEYPQSAAIDLRCVNMVADLWHAPAPKNGQAVGTNTIGSSEACMLGGMAMKWRWRKRMEAAGKPTDKPNLVCGP-VQICWHKFARYWDVELREIPMRPGQLFMDPKRMIEACDENTIGVVPTFGVTYTGNYEFPQPLHDALDK 229          
BLAST of FC920844 vs. ExPASy Swiss-Prot
Match: DCEB_ECO57 (Glutamate decarboxylase beta OS=Escherichia coli O157:H7 GN=gadB PE=2 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 3.358e-46
Identity = 93/213 (43.66%), Postives = 128/213 (60.09%), Query Frame = 3
Query:    3 FASRYVRPAIPRFKMPDNSMPKEAAYQVINDELMLDGNPRLNLASFVTTWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFXXXXXXXXXXXGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLPK 641
            F ++ +       + P + M  + A+Q+INDEL LDGN R NLA+F  TW +    KL+  SINKN++D +EYP +  +  RCVNM+A L++ P   +  AVG  T+GSSEA ML G+A K +W+++ +  GKP DKPN+V G  VQ+CW KFARY+           G   M+P + +E  DENTI V    G T TG +E  + LHD L K
Sbjct:   18 FGAKSISTIAESKRFPLHEMRDDVAFQIINDELYLDGNARQNLATFCQTWDDENVHKLMDLSINKNWIDKEEYPQSAAIDLRCVNMVADLWHAPAPKNGQAVGTNTIGSSEACMLGGMAMKWRWRKRMEAAGKPTDKPNLVCGP-VQICWHKFARYWDVELREIPMRPGQLFMDPKRMIEACDENTIGVVPTFGVTYTGNYEFPQPLHDALDK 229          
BLAST of FC920844 vs. ExPASy Swiss-Prot
Match: DCEA_SHIFL (Glutamate decarboxylase alpha OS=Shigella flexneri GN=gadA PE=2 SV=2)

HSP 1 Score: 184.882 bits (468), Expect = 3.358e-46
Identity = 93/213 (43.66%), Postives = 128/213 (60.09%), Query Frame = 3
Query:    3 FASRYVRPAIPRFKMPDNSMPKEAAYQVINDELMLDGNPRLNLASFVTTWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFXXXXXXXXXXXGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLPK 641
            F ++ +       + P + M  + A+Q+INDEL LDGN R NLA+F  TW +    KL+  SINKN++D +EYP +  +  RCVNM+A L++ P   +  AVG  T+GSSEA ML G+A K +W+++ +  GKP DKPN+V G  VQ+CW KFARY+           G   M+P + +E  DENTI V    G T TG +E  + LHD L K
Sbjct:   18 FGAKAISTIAESKRFPLHEMRDDVAFQIINDELYLDGNARQNLATFCQTWDDENVHKLMDLSINKNWIDKEEYPQSAAIDLRCVNMVADLWHAPAPKNGQAVGTNTIGSSEACMLGGMAMKWRWRKRMEAAGKPTDKPNLVCGP-VQICWHKFARYWDVELREIPMRPGQLFMDPKRMIEACDENTIGVVPTFGVTYTGNYEFPQPLHDALDK 229          
BLAST of FC920844 vs. ExPASy Swiss-Prot
Match: DCEA_ECOLI (Glutamate decarboxylase alpha OS=Escherichia coli (strain K12) GN=gadA PE=1 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 3.358e-46
Identity = 93/213 (43.66%), Postives = 128/213 (60.09%), Query Frame = 3
Query:    3 FASRYVRPAIPRFKMPDNSMPKEAAYQVINDELMLDGNPRLNLASFVTTWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFXXXXXXXXXXXGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLPK 641
            F ++ +       + P + M  + A+Q+INDEL LDGN R NLA+F  TW +    KL+  SINKN++D +EYP +  +  RCVNM+A L++ P   +  AVG  T+GSSEA ML G+A K +W+++ +  GKP DKPN+V G  VQ+CW KFARY+           G   M+P + +E  DENTI V    G T TG +E  + LHD L K
Sbjct:   18 FGAKAISTIAESKRFPLHEMRDDVAFQIINDELYLDGNARQNLATFCQTWDDENVHKLMDLSINKNWIDKEEYPQSAAIDLRCVNMVADLWHAPAPKNGQAVGTNTIGSSEACMLGGMAMKWRWRKRMEAAGKPTDKPNLVCGP-VQICWHKFARYWDVELREIPMRPGQLFMDPKRMIEACDENTIGVVPTFGVTYTGNYEFPQPLHDALDK 229          
BLAST of FC920844 vs. ExPASy Swiss-Prot
Match: DCEA_ECOL6 (Glutamate decarboxylase alpha OS=Escherichia coli O6 GN=gadA PE=1 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 3.358e-46
Identity = 93/213 (43.66%), Postives = 128/213 (60.09%), Query Frame = 3
Query:    3 FASRYVRPAIPRFKMPDNSMPKEAAYQVINDELMLDGNPRLNLASFVTTWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFXXXXXXXXXXXGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLPK 641
            F ++ +       + P + M  + A+Q+INDEL LDGN R NLA+F  TW +    KL+  SINKN++D +EYP +  +  RCVNM+A L++ P   +  AVG  T+GSSEA ML G+A K +W+++ +  GKP DKPN+V G  VQ+CW KFARY+           G   M+P + +E  DENTI V    G T TG +E  + LHD L K
Sbjct:   18 FGAKAISTIAESKRFPLHEMRDDVAFQIINDELYLDGNARQNLATFCQTWDDENVHKLMDLSINKNWIDKEEYPQSAAIDLRCVNMVADLWHAPAPKNGQAVGTNTIGSSEACMLGGMAMKWRWRKRMEAAGKPTDKPNLVCGP-VQICWHKFARYWDVELREIPMRPGQLFMDPKRMIEACDENTIGVVPTFGVTYTGNYEFPQPLHDALDK 229          
The following BLAST results are available for this feature:
BLAST of FC920844 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
DCE_SOLLC7.846e-10381.78Glutamate decarboxylase OS=Solanum lycopersicum PE... [more]
DCE_PETHY6.587e-10283.18Glutamate decarboxylase OS=Petunia hybrida GN=GAD ... [more]
DCE1_ARATH8.593e-10281.78Glutamate decarboxylase 1 OS=Arabidopsis thaliana ... [more]
DCE2_ARATH2.743e-9778.04Glutamate decarboxylase 2 OS=Arabidopsis thaliana ... [more]
DCEB_SHIFL3.358e-4643.66Glutamate decarboxylase beta OS=Shigella flexneri ... [more]
DCEB_ECOLI3.358e-4643.66Glutamate decarboxylase beta OS=Escherichia coli (... [more]
DCEB_ECO573.358e-4643.66Glutamate decarboxylase beta OS=Escherichia coli O... [more]
DCEA_SHIFL3.358e-4643.66Glutamate decarboxylase alpha OS=Shigella flexneri... [more]
DCEA_ECOLI3.358e-4643.66Glutamate decarboxylase alpha OS=Escherichia coli ... [more]
DCEA_ECOL63.358e-4643.66Glutamate decarboxylase alpha OS=Escherichia coli ... [more]

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Properties
Property NameValue
Genbank descriptionC32013G01EF RVDevelop1 Citrus clementina cDNA clone C32013G01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920844 ID=FC920844; Name=FC920844; organism=Citrus clementina; type=EST; length=674bp
CATTTGCTTCAAGATATGTCCGTCCTGCTATTCCCAGATTCAAGATGCCA
GATAATTCAATGCCAAAGGAGGCAGCCTATCAGGTAATAAATGATGAGCT
GATGTTAGATGGAAATCCAAGGCTGAACTTGGCATCTTTTGTGACCACTT
GGATGGAGCCCGAGTGTGATAAGCTTGTCATGGCTTCGATTAATAAAAAC
TATGTTGACATGGATGAATACCCTGTAACCACAGAGCTCCAGAATCGGTG
TGTGAATATGATTGCCCACCTATTTAATACTCCAGTTGCGGATGACAAGA
CTGCAGTGGGCGTGGGGACTGTAGGTTCATCAGAGGCAATAATGCTTGCT
GGCTTGGCTTTTAAAAGGAAGTGGCAGCAGAAGAGAAAAGAGCAAGGCAA
ACCCTATGATAAGCCCAATATAGTCACTGGAGCTAATGTGCAGGTATGCT
GGGAGAAATTTGCGAGGTACTTTGAGGTTGAGCTGAAGGAGGTGAAACTG
GAAGAGGGATATTATGTGATGAATCCTGTGAAAGCTGTTGAGTTGGTAGA
TGAGAACACCATTTGTGTTGCAGCCATTCTGGGATCAACCTTGACGGGAG
AATTTGAGGATGTTAAGCTTCTTCATGACCTCCTCCCAAAAAGAATGAGG
AGACCGGTTGGGACACCCCATTCA
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