FC920849

Overview
NameFC920849
Unique NameFC920849
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length673
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC920849_ssr245 microsatellite FC920849_ssr245:245..256. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig15047 contig Ccv1_Contig15047:1..662. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920849 vs. ExPASy Swiss-Prot
Match: TCMO_POPKI (Trans-cinnamate 4-monooxygenase OS=Populus kitakamiensis GN=CYP73A16 PE=2 SV=1)

HSP 1 Score: 327.405 bits (838), Expect = 4.189e-89
Identity = 161/190 (84.74%), Postives = 171/190 (90.00%), Query Frame = 1
Query:  103 ITVSKLRGKRXXXXXXXXXXXXXXNWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSRTRNVVFDIFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQQRFNWEDEAARVVEDVKKDPEAATNGIVLRRRLQLMMYNNMYRIMFDRRFESQDDPLFNRLKALN 672
            I VSKLRGKR              NWLQVGDDLNHRNL+DLAKK+GD+ LLRMGQRNLVVVSSPD +KEVLHTQGVEFGSRTRNVVFDIFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQ R+ WE+EAA+VVEDVKK+PEAATNGIVLRRRLQLMMYNNMYRIMFDRRFES+DDPLFN+LKALN
Sbjct:   21 ILVSKLRGKRFKLPPGPLPVPVFGNWLQVGDDLNHRNLTDLAKKFGDIFLLRMGQRNLVVVSSPDLSKEVLHTQGVEFGSRTRNVVFDIFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQYRYGWEEEAAQVVEDVKKNPEAATNGIVLRRRLQLMMYNNMYRIMFDRRFESEDDPLFNKLKALN 210          
BLAST of FC920849 vs. ExPASy Swiss-Prot
Match: TCMO_RUTGR (Trans-cinnamate 4-monooxygenase OS=Ruta graveolens GN=CYP73A2 PE=2 SV=1)

HSP 1 Score: 321.627 bits (823), Expect = 2.298e-87
Identity = 160/190 (84.21%), Postives = 168/190 (88.42%), Query Frame = 1
Query:  103 ITVSKLRGKRXXXXXXXXXXXXXXNWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSRTRNVVFDIFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQQRFNWEDEAARVVEDVKKDPEAATNGIVLRRRLQLMMYNNMYRIMFDRRFESQDDPLFNRLKALN 672
            I VSKLRGKR              NWLQVGDDLN R L++L+KK+GDV LLRMGQRNLVVVSSP+ AKEVLHTQGVEFGSRTRNVVFDIFTGKGQDMVFTVY EHWRKMRRIMTVPFFTNKVVQQQRFNWEDEAARVVEDVKKDP+AAT GIVLRRRLQL+MYNNMYRIMFDRRFES DDPLFN+LKALN
Sbjct:   21 IAVSKLRGKRFKLPPGPLGFPVFGNWLQVGDDLNQRKLANLSKKFGDVYLLRMGQRNLVVVSSPEMAKEVLHTQGVEFGSRTRNVVFDIFTGKGQDMVFTVYSEHWRKMRRIMTVPFFTNKVVQQQRFNWEDEAARVVEDVKKDPQAATTGIVLRRRLQLLMYNNMYRIMFDRRFESVDDPLFNKLKALN 210          
BLAST of FC920849 vs. ExPASy Swiss-Prot
Match: TCMO_POPTM (Trans-cinnamate 4-monooxygenase OS=Populus tremuloides GN=CYP73A13 PE=2 SV=1)

HSP 1 Score: 321.242 bits (822), Expect = 3.002e-87
Identity = 158/190 (83.16%), Postives = 171/190 (90.00%), Query Frame = 1
Query:  103 ITVSKLRGKRXXXXXXXXXXXXXXNWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSRTRNVVFDIFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQQRFNWEDEAARVVEDVKKDPEAATNGIVLRRRLQLMMYNNMYRIMFDRRFESQDDPLFNRLKALN 672
            I VSKLRGKR              NWLQVGDDLNHRNL+DLAKK+GD+LLLRMGQRNLVVVSSP+ +KEVLHTQGVEFGSRTRNVVFDIFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQ R+ WE+EAA+VVEDVKK+P AAT+GIVLRRRLQLMMYNNMYRIMFDRRFES++DPLFN+LKALN
Sbjct:   21 ILVSKLRGKRFKLPPGPLPVPVFGNWLQVGDDLNHRNLTDLAKKFGDILLLRMGQRNLVVVSSPELSKEVLHTQGVEFGSRTRNVVFDIFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQYRYGWEEEAAQVVEDVKKNPGAATHGIVLRRRLQLMMYNNMYRIMFDRRFESEEDPLFNKLKALN 210          
BLAST of FC920849 vs. ExPASy Swiss-Prot
Match: TCMO_CATRO (Trans-cinnamate 4-monooxygenase OS=Catharanthus roseus GN=CYP73A4 PE=2 SV=1)

HSP 1 Score: 319.316 bits (817), Expect = 1.141e-86
Identity = 157/188 (83.51%), Postives = 168/188 (89.36%), Query Frame = 1
Query:  109 VSKLRGKRXXXXXXXXXXXXXXNWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSRTRNVVFDIFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQQRFNWEDEAARVVEDVKKDPEAATNGIVLRRRLQLMMYNNMYRIMFDRRFESQDDPLFNRLKALN 672
            VSKLRGK+              NWLQVGDDLNHRNLSD AKK+G++ LLRMGQRNLVVVSSP+ AKEVLHTQGVEFGSRTRNVVFDIFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQ R+ WE+EAARVVEDVKK+PE+ATNGIVLRRRLQLMMYNNMYRIMFDRRFES+DDPLF +LKALN
Sbjct:   23 VSKLRGKKFKLPPGPIPVPVFGNWLQVGDDLNHRNLSDYAKKFGEIFLLRMGQRNLVVVSSPELAKEVLHTQGVEFGSRTRNVVFDIFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQYRYGWEEEAARVVEDVKKNPESATNGIVLRRRLQLMMYNNMYRIMFDRRFESEDDPLFVKLKALN 210          
BLAST of FC920849 vs. ExPASy Swiss-Prot
Match: TCMO_PETCR (Trans-cinnamate 4-monooxygenase OS=Petroselinum crispum GN=CYP73A10 PE=2 SV=1)

HSP 1 Score: 310.457 bits (794), Expect = 5.299e-84
Identity = 154/190 (81.05%), Postives = 164/190 (86.32%), Query Frame = 1
Query:  103 ITVSKLRGKRXXXXXXXXXXXXXXNWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSRTRNVVFDIFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQQRFNWEDEAARVVEDVKKDPEAATNGIVLRRRLQLMMYNNMYRIMFDRRFESQDDPLFNRLKALN 672
            IT+SKLRGK+              NWLQVGDDLN RNL D AKK+GD+ +LRMGQRNLVVVSSP+ AK+VLHTQGVEFGSRTRNVVFDIFTGKGQDMVFTVY EHWRKMRRIMTVPFFTNKVVQQ RF WEDEAARVVEDVK +PEAATNGIVLR RLQL+MYNNMYRIMFDRRFES DDPLF +LKALN
Sbjct:   22 ITISKLRGKKLKLPPGPIPVPVFGNWLQVGDDLNQRNLVDYAKKFGDLFMLRMGQRNLVVVSSPELAKDVLHTQGVEFGSRTRNVVFDIFTGKGQDMVFTVYSEHWRKMRRIMTVPFFTNKVVQQYRFGWEDEAARVVEDVKANPEAATNGIVLRNRLQLLMYNNMYRIMFDRRFESVDDPLFLKLKALN 211          
BLAST of FC920849 vs. ExPASy Swiss-Prot
Match: TCMO_HELTU (Trans-cinnamate 4-monooxygenase OS=Helianthus tuberosus GN=CYP73A1 PE=1 SV=1)

HSP 1 Score: 310.457 bits (794), Expect = 5.299e-84
Identity = 152/190 (80.00%), Postives = 167/190 (87.89%), Query Frame = 1
Query:  103 ITVSKLRGKRXXXXXXXXXXXXXXNWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSRTRNVVFDIFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQQRFNWEDEAARVVEDVKKDPEAATNGIVLRRRLQLMMYNNMYRIMFDRRFESQDDPLFNRLKALN 672
            I +SKLRGK+              NWLQVGDDLNHRNL+DLAK++G++LLLRMGQRNLVVVSSP+ AKEVLHTQGVEFGSRTRNVVFDIFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQ R+ WE EAA VV+DVKK+P AAT GIV+RRRLQLMMYNNM+RIMFDRRFES+DDPLF +LKALN
Sbjct:   21 ILISKLRGKKFKLPPGPIPVPIFGNWLQVGDDLNHRNLTDLAKRFGEILLLRMGQRNLVVVSSPELAKEVLHTQGVEFGSRTRNVVFDIFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQYRYGWEAEAAAVVDDVKKNPAAATEGIVIRRRLQLMMYNNMFRIMFDRRFESEDDPLFLKLKALN 210          
BLAST of FC920849 vs. ExPASy Swiss-Prot
Match: TCMO_GLYEC (Trans-cinnamate 4-monooxygenase OS=Glycyrrhiza echinata GN=CYP73A14 PE=2 SV=1)

HSP 1 Score: 310.457 bits (794), Expect = 5.299e-84
Identity = 151/190 (79.47%), Postives = 166/190 (87.37%), Query Frame = 1
Query:  103 ITVSKLRGKRXXXXXXXXXXXXXXNWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSRTRNVVFDIFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQQRFNWEDEAARVVEDVKKDPEAATNGIVLRRRLQLMMYNNMYRIMFDRRFESQDDPLFNRLKALN 672
            I +SKLRG+R              NWLQVGDDLNHRNL+DLAK++GD+ LLRMGQRNLVVVSSP+ AKEVLHTQGVEFGSRTRNVVFDIFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQ RF WE EAA VV+DV+++P+AA  GIVLRRRLQLMMYNNMYRIMFDRRFES++DPLF +LKALN
Sbjct:   21 IAISKLRGRRFKLPPGPIPVPIFGNWLQVGDDLNHRNLTDLAKRFGDIFLLRMGQRNLVVVSSPELAKEVLHTQGVEFGSRTRNVVFDIFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQYRFGWESEAASVVDDVRRNPDAAAGGIVLRRRLQLMMYNNMYRIMFDRRFESEEDPLFVKLKALN 210          
BLAST of FC920849 vs. ExPASy Swiss-Prot
Match: TCMO_PHAAU (Trans-cinnamate 4-monooxygenase OS=Phaseolus aureus GN=CYP73A2 PE=1 SV=1)

HSP 1 Score: 308.531 bits (789), Expect = 2.014e-83
Identity = 151/190 (79.47%), Postives = 165/190 (86.84%), Query Frame = 1
Query:  103 ITVSKLRGKRXXXXXXXXXXXXXXNWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSRTRNVVFDIFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQQRFNWEDEAARVVEDVKKDPEAATNGIVLRRRLQLMMYNNMYRIMFDRRFESQDDPLFNRLKALN 672
            I VSKLRGKR              NWLQVGDDLNHRNL+ LAK++GD+ LLRMGQRNLVVVSSPD AKEVLHTQGVEFGSRTRNVVFDIFTG+GQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQ R  WE EAA VV+DV+K+P+AA +G+V+RRRLQLMMYNNMYRIMFDRRFES++DPLF RLKALN
Sbjct:   21 IVVSKLRGKRFKLPPGPLPVPIFGNWLQVGDDLNHRNLTQLAKRFGDIFLLRMGQRNLVVVSSPDLAKEVLHTQGVEFGSRTRNVVFDIFTGEGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQYRHGWEAEAAAVVDDVRKNPDAAVSGLVIRRRLQLMMYNNMYRIMFDRRFESEEDPLFQRLKALN 210          
BLAST of FC920849 vs. ExPASy Swiss-Prot
Match: TCMO_SOYBN (Trans-cinnamate 4-monooxygenase OS=Glycine max GN=CYP73A11 PE=2 SV=1)

HSP 1 Score: 307.375 bits (786), Expect = 4.486e-83
Identity = 150/190 (78.95%), Postives = 164/190 (86.32%), Query Frame = 1
Query:  103 ITVSKLRGKRXXXXXXXXXXXXXXNWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSRTRNVVFDIFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQQRFNWEDEAARVVEDVKKDPEAATNGIVLRRRLQLMMYNNMYRIMFDRRFESQDDPLFNRLKALN 672
            I VS LRG++              NWLQVGDDLNHRNL+DLAKK+GD+ LLRMGQRNLVVVSSP+ AKEVLHTQGVEFGSRTRNVVFDIFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQ R  WE EAA VVEDVKK+P+AA +G V+RRRLQLMMYNNMYRIMFDRRFES++DP+F RL+ALN
Sbjct:   21 IAVSTLRGRKFKLPPGPLPVPIFGNWLQVGDDLNHRNLTDLAKKFGDIFLLRMGQRNLVVVSSPELAKEVLHTQGVEFGSRTRNVVFDIFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQYRHGWESEAAAVVEDVKKNPDAAVSGTVIRRRLQLMMYNNMYRIMFDRRFESEEDPIFQRLRALN 210          
BLAST of FC920849 vs. ExPASy Swiss-Prot
Match: TCMO_ZINEL (Trans-cinnamate 4-monooxygenase OS=Zinnia elegans GN=CYP73A12 PE=2 SV=1)

HSP 1 Score: 305.834 bits (782), Expect = 1.305e-82
Identity = 150/190 (78.95%), Postives = 165/190 (86.84%), Query Frame = 1
Query:  103 ITVSKLRGKRXXXXXXXXXXXXXXNWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSRTRNVVFDIFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQQRFNWEDEAARVVEDVKKDPEAATNGIVLRRRLQLMMYNNMYRIMFDRRFESQDDPLFNRLKALN 672
            I +SKLRGKR              NWLQVGDDLNHRNL+DLAKK+G++ LLRMGQRNLVVVSSP+ AKEVLHTQGVEFGSRTRNVVFDIFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQ R  WE EAA VV+DVKK+P+AAT G+V+R+RLQLMMYNNM+RIMFDRRFES+DDPLF +LK LN
Sbjct:   21 IFISKLRGKRFKLPPGPVPVPIFGNWLQVGDDLNHRNLTDLAKKFGEIFLLRMGQRNLVVVSSPNLAKEVLHTQGVEFGSRTRNVVFDIFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQYRTGWEAEAAAVVDDVKKNPKAATEGVVIRKRLQLMMYNNMFRIMFDRRFESEDDPLFVKLKMLN 210          
The following BLAST results are available for this feature:
BLAST of FC920849 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 68
Match NameE-valueIdentityDescription
TCMO_POPKI4.189e-8984.74Trans-cinnamate 4-monooxygenase OS=Populus kitakam... [more]
TCMO_RUTGR2.298e-8784.21Trans-cinnamate 4-monooxygenase OS=Ruta graveolens... [more]
TCMO_POPTM3.002e-8783.16Trans-cinnamate 4-monooxygenase OS=Populus tremulo... [more]
TCMO_CATRO1.141e-8683.51Trans-cinnamate 4-monooxygenase OS=Catharanthus ro... [more]
TCMO_PETCR5.299e-8481.05Trans-cinnamate 4-monooxygenase OS=Petroselinum cr... [more]
TCMO_HELTU5.299e-8480.00Trans-cinnamate 4-monooxygenase OS=Helianthus tube... [more]
TCMO_GLYEC5.299e-8479.47Trans-cinnamate 4-monooxygenase OS=Glycyrrhiza ech... [more]
TCMO_PHAAU2.014e-8379.47Trans-cinnamate 4-monooxygenase OS=Phaseolus aureu... [more]
TCMO_SOYBN4.486e-8378.95Trans-cinnamate 4-monooxygenase OS=Glycine max GN=... [more]
TCMO_ZINEL1.305e-8278.95Trans-cinnamate 4-monooxygenase OS=Zinnia elegans ... [more]

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Properties
Property NameValue
Genbank descriptionC32013G08EF RVDevelop1 Citrus clementina cDNA clone C32013G08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920849 ID=FC920849; Name=FC920849; organism=Citrus clementina; type=EST; length=673bp
GGACCACTGGAGTCCCTGTATCTCATTACGTTAATCGTAAAGATGGATCT
CCTCTTGCTGGAAAAGACGCTTTTAGCCCTCTTCGCCGCCGTTGTTGTCG
CCATTACCGTCTCTAAACTCCGCGGAAAGCGCTTCAAGCTCCCCCCCGGC
CCCCTCCCCGTCCCCGTATTCGGCAACTGGCTCCAGGTCGGCGATGACTT
GAACCATCGGAACCTCTCCGACTTAGCCAAGAAATATGGAGATGTCCTCC
TCCTCCGCATGGGCCAGCGCAACCTCGTCGTCGTCTCGTCGCCGGACCAC
GCCAAGGAGGTTCTGCACACGCAGGGAGTGGAGTTCGGATCACGAACGAG
GAACGTCGTGTTCGATATCTTCACTGGGAAGGGCCAGGACATGGTGTTCA
CAGTGTACGGCGAGCACTGGCGGAAGATGCGGAGGATCATGACCGTCCCT
TTCTTCACGAACAAAGTGGTTCAGCAGCAGCGGTTTAATTGGGAAGACGA
GGCCGCTAGAGTCGTTGAGGATGTTAAGAAGGACCCCGAGGCGGCGACCA
ATGGGATCGTCTTGAGGAGGCGGCTGCAGCTTATGATGTACAACAACATG
TACAGGATTATGTTTGATAGAAGATTCGAGAGTCAGGATGATCCTTTGTT
TAACAGATTAAAGGCTTTGAATG
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