FC920853

Overview
NameFC920853
Unique NameFC920853
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length699
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14338 contig Ccv1_Contig14338:11..709. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920853 vs. ExPASy Swiss-Prot
Match: LYPA2_RAT (Acyl-protein thioesterase 2 OS=Rattus norvegicus GN=Lypla2 PE=1 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.989e-20
Identity = 56/141 (39.72%), Postives = 82/141 (58.16%), Query Frame = 3
Query:  213 KHQATVVWLHGLGDNGSSWSQLLETLPLPNIKWICPTAPTRPMTIFGGFPSTAWFDVGDLSEDVPDDLEGLDAAAAHVVNLLSTEPTD----IKLGVGGFSMGAATALYSA-TCFAHGKYGNGNPYPAKLSAVVGLSGWLP 620
            +  A V++LHGLGD G SW+  L T+ LP++K+ICP AP  P+T+       +WFD+  LS D P+D  G+  AA ++  L+  E  +     ++ +GGFS G A +LY+A TC          P+P  L+ +V LS WLP
Sbjct:   22 RETAAVIFLHGLGDTGHSWADALSTIRLPHVKYICPHAPRIPVTLNMKMVMPSWFDLMGLSPDAPEDEAGIKKAAENIKALIEHEMKNGIPANRIVLGGFSQGGALSLYTALTC----------PHP--LAGIVALSCWLP 150          
BLAST of FC920853 vs. ExPASy Swiss-Prot
Match: LYPA2_MOUSE (Acyl-protein thioesterase 2 OS=Mus musculus GN=Lypla2 PE=1 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.989e-20
Identity = 56/141 (39.72%), Postives = 82/141 (58.16%), Query Frame = 3
Query:  213 KHQATVVWLHGLGDNGSSWSQLLETLPLPNIKWICPTAPTRPMTIFGGFPSTAWFDVGDLSEDVPDDLEGLDAAAAHVVNLLSTEPTD----IKLGVGGFSMGAATALYSA-TCFAHGKYGNGNPYPAKLSAVVGLSGWLP 620
            +  A V++LHGLGD G SW+  L T+ LP++K+ICP AP  P+T+       +WFD+  LS D P+D  G+  AA ++  L+  E  +     ++ +GGFS G A +LY+A TC          P+P  L+ +V LS WLP
Sbjct:   22 RETAAVIFLHGLGDTGHSWADALSTIRLPHVKYICPHAPRIPVTLNMKMVMPSWFDLMGLSPDAPEDEAGIKKAAENIKALIEHEMKNGIPANRIVLGGFSQGGALSLYTALTC----------PHP--LAGIVALSCWLP 150          
BLAST of FC920853 vs. ExPASy Swiss-Prot
Match: LYPA2_HUMAN (Acyl-protein thioesterase 2 OS=Homo sapiens GN=LYPLA2 PE=1 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.989e-20
Identity = 56/141 (39.72%), Postives = 82/141 (58.16%), Query Frame = 3
Query:  213 KHQATVVWLHGLGDNGSSWSQLLETLPLPNIKWICPTAPTRPMTIFGGFPSTAWFDVGDLSEDVPDDLEGLDAAAAHVVNLLSTEPTD----IKLGVGGFSMGAATALYSA-TCFAHGKYGNGNPYPAKLSAVVGLSGWLP 620
            +  A V++LHGLGD G SW+  L T+ LP++K+ICP AP  P+T+       +WFD+  LS D P+D  G+  AA ++  L+  E  +     ++ +GGFS G A +LY+A TC          P+P  L+ +V LS WLP
Sbjct:   22 RETAAVIFLHGLGDTGHSWADALSTIRLPHVKYICPHAPRIPVTLNMKMVMPSWFDLMGLSPDAPEDEAGIKKAAENIKALIEHEMKNGIPANRIVLGGFSQGGALSLYTALTC----------PHP--LAGIVALSCWLP 150          
BLAST of FC920853 vs. ExPASy Swiss-Prot
Match: APTH1_SCHPO (Acyl-protein thioesterase 1 OS=Schizosaccharomyces pombe GN=SPAC8E11.04c PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.091e-18
Identity = 51/148 (34.46%), Postives = 81/148 (54.73%), Query Frame = 3
Query:  195 VVRPKGKHQATVVWLHGLGDNGSSWSQLLETLP-LPNIKWICPTAPTRPMTIFGGFPSTAWFDVGDLSEDVPDDLEGLDAAAAHVVNLLSTE-----PTDIKLGVGGFSMGAATALYSATCFAHGKYGNGNPYPAKLSAVVGLSGWLP 620
            ++ P   H ATV++LHGLGD+G  WS +  T     +IKWI P AP+ P+T+  G    AW+D+   ++   +D  G+  +A  +  L+  E     P+D ++ +GGFS G   +LY+           G  YP +L+ ++G SG+LP
Sbjct:    9 IINPSVAHTATVIFLHGLGDSGQGWSFMANTWSNFKHIKWIFPNAPSIPVTVNNGMKMPAWYDIYSFADMKREDENGILRSAGQLHELIDAELALGIPSD-RILIGGFSQGCMVSLYA-----------GLTYPKRLAGIMGHSGFLP 144          
BLAST of FC920853 vs. ExPASy Swiss-Prot
Match: LYPA1_RABIT (Acyl-protein thioesterase 1 OS=Oryctolagus cuniculus GN=LYPLA1 PE=1 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.058e-17
Identity = 54/147 (36.73%), Postives = 76/147 (51.70%), Query Frame = 3
Query:  195 VVRPKGKHQATVVWLHGLGDNGSSWSQLLETLPLPNIKWICPTAPTRPMTIFGGFPSTAWFDVGDLSEDVPDDLEGLDAAAAHVVNLLSTE-----PTDIKLGVGGFSMGAATALYSATCFAHGKYGNGNPYPAKLSAVVGLSGWLP 620
            VV    K  A V++LHGLGD G  W++    +  P+IK+ICP AP  P+T+       +WFD+  LS D  +D  G+  AA  V  L+  E     P++ ++ +GGFS G A +LY+A                KL+ V  LS WLP
Sbjct:   13 VVPAARKATAAVIFLHGLGDTGHGWAEAFAGIKSPHIKYICPHAPVMPVTLNMNMAMPSWFDIVGLSPDSQEDESGIKQAAETVKALIDQEVKNGIPSN-RIILGGFSQGGALSLYTALTTQQ-----------KLAGVTALSCWLP 147          
BLAST of FC920853 vs. ExPASy Swiss-Prot
Match: LYPA1_MOUSE (Acyl-protein thioesterase 1 OS=Mus musculus GN=Lypla1 PE=1 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.058e-17
Identity = 54/147 (36.73%), Postives = 76/147 (51.70%), Query Frame = 3
Query:  195 VVRPKGKHQATVVWLHGLGDNGSSWSQLLETLPLPNIKWICPTAPTRPMTIFGGFPSTAWFDVGDLSEDVPDDLEGLDAAAAHVVNLLSTE-----PTDIKLGVGGFSMGAATALYSATCFAHGKYGNGNPYPAKLSAVVGLSGWLP 620
            VV    K  A V++LHGLGD G  W++    +  P+IK+ICP AP  P+T+       +WFD+  LS D  +D  G+  AA  V  L+  E     P++ ++ +GGFS G A +LY+A                KL+ V  LS WLP
Sbjct:   13 VVPAARKATAAVIFLHGLGDTGHGWAEAFAGIKSPHIKYICPHAPVMPVTLNMNMAMPSWFDIVGLSPDSQEDESGIKQAAETVKALIDQEVKNGIPSN-RIILGGFSQGGALSLYTALTTQQ-----------KLAGVTALSCWLP 147          
BLAST of FC920853 vs. ExPASy Swiss-Prot
Match: LYPA1_PONAB (Acyl-protein thioesterase 1 OS=Pongo abelii GN=LYPLA1 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.585e-17
Identity = 52/147 (35.37%), Postives = 77/147 (52.38%), Query Frame = 3
Query:  195 VVRPKGKHQATVVWLHGLGDNGSSWSQLLETLPLPNIKWICPTAPTRPMTIFGGFPSTAWFDVGDLSEDVPDDLEGLDAAAAHVVNLLSTE-----PTDIKLGVGGFSMGAATALYSATCFAHGKYGNGNPYPAKLSAVVGLSGWLP 620
            +V    K  A V++LHGLGD G  W++    +   +IK+ICP AP RP+T+       +WFD+  LS D  +D  G+  AA ++  L+  E     P++ ++ +GGFS G A +LY+A                KL+ V  LS WLP
Sbjct:   13 IVPAARKATAAVIFLHGLGDTGHGWAEAFAGIRSSHIKYICPHAPVRPVTLNMNMAMPSWFDIIGLSPDSQEDESGIKQAAENIKALIDQEVKNGIPSN-RIILGGFSQGGALSLYTALTTQQ-----------KLAGVTALSCWLP 147          
BLAST of FC920853 vs. ExPASy Swiss-Prot
Match: LYPA1_HUMAN (Acyl-protein thioesterase 1 OS=Homo sapiens GN=LYPLA1 PE=1 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 5.989e-17
Identity = 52/147 (35.37%), Postives = 77/147 (52.38%), Query Frame = 3
Query:  195 VVRPKGKHQATVVWLHGLGDNGSSWSQLLETLPLPNIKWICPTAPTRPMTIFGGFPSTAWFDVGDLSEDVPDDLEGLDAAAAHVVNLLSTE-----PTDIKLGVGGFSMGAATALYSATCFAHGKYGNGNPYPAKLSAVVGLSGWLP 620
            +V    K  A V++LHGLGD G  W++    +   +IK+ICP AP RP+T+       +WFD+  LS D  +D  G+  AA ++  L+  E     P++ ++ +GGFS G A +LY+A                KL+ V  LS WLP
Sbjct:   13 IVPAARKATAAVIFLHGLGDTGHGWAEAFAGIRSSHIKYICPHAPVRPVTLNMNVAMPSWFDIIGLSPDSQEDESGIKQAAENIKALIDQEVKNGIPSN-RIILGGFSQGGALSLYTALTTQQ-----------KLAGVTALSCWLP 147          
BLAST of FC920853 vs. ExPASy Swiss-Prot
Match: APT11_DICDI (Acyl-protein thioesterase 1 homolog 1 OS=Dictyostelium discoideum GN=DDB_G0282005 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.334e-16
Identity = 51/164 (31.10%), Postives = 87/164 (53.05%), Query Frame = 3
Query:  189 TYVVRPKGKHQATVVWLHGLGDNGSSWSQLLETLPLPN---IKWICPTAPTRPMTIFGGFPSTAWFDVGDLSEDVPDDLEGLDAAAAHVVNLLSTEPTDIKLG-----VGGFSMGAATALYSATCFAHGKYGNGNPYPAKLSAVVGLSGWLPCSKTLKNN*VEK 656
            +Y+ +    H ATV++ HGLGD+G+ W +++E +   N   I++ICP AP + +T+ GGF   +W+D+  LS    +D   +D +   +  ++  E  + K+      +GGFS GAA +LY  T ++  +         KL   + LSG+LP +     N + K
Sbjct:    9 SYIQKEITTHSATVIFSHGLGDSGAGWIEVMEEIQSRNNGHIRFICPNAPIQAVTLNGGFKMPSWYDIKSLSSRGDEDPAQVDESKNIIETIIKHEMEEEKIPAERIIIGGFSQGAALSLY--TFYSQTE--------TKLGGCIALSGYLPLATKFVANSLNK 162          
BLAST of FC920853 vs. ExPASy Swiss-Prot
Match: LYPA1_RAT (Acyl-protein thioesterase 1 OS=Rattus norvegicus GN=Lypla1 PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.972e-16
Identity = 53/147 (36.05%), Postives = 75/147 (51.02%), Query Frame = 3
Query:  195 VVRPKGKHQATVVWLHGLGDNGSSWSQLLETLPLPNIKWICPTAPTRPMTIFGGFPSTAWFDVGDLSEDVPDDLEGLDAAAAHVVNLLSTE-----PTDIKLGVGGFSMGAATALYSATCFAHGKYGNGNPYPAKLSAVVGLSGWLP 620
            VV    K  A V++LHGLGD G  W++    +   +IK+ICP AP  P+T+       +WFD+  LS D  +D  G+  AA  V  L+  E     P++ ++ +GGFS G A +LY+A                KL+ V  LS WLP
Sbjct:   13 VVPAARKATAAVIFLHGLGDTGHGWAEAFAGIKSSHIKYICPHAPVMPVTLNMSMMMPSWFDIIGLSPDSQEDESGIKQAAETVKALIDQEVKNGIPSN-RIILGGFSQGGALSLYTALTTQQ-----------KLAGVTALSCWLP 147          
The following BLAST results are available for this feature:
BLAST of FC920853 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
LYPA2_RAT1.989e-2039.72Acyl-protein thioesterase 2 OS=Rattus norvegicus G... [more]
LYPA2_MOUSE1.989e-2039.72Acyl-protein thioesterase 2 OS=Mus musculus GN=Lyp... [more]
LYPA2_HUMAN1.989e-2039.72Acyl-protein thioesterase 2 OS=Homo sapiens GN=LYP... [more]
APTH1_SCHPO1.091e-1834.46Acyl-protein thioesterase 1 OS=Schizosaccharomyces... [more]
LYPA1_RABIT2.058e-1736.73Acyl-protein thioesterase 1 OS=Oryctolagus cunicul... [more]
LYPA1_MOUSE2.058e-1736.73Acyl-protein thioesterase 1 OS=Mus musculus GN=Lyp... [more]
LYPA1_PONAB4.585e-1735.37Acyl-protein thioesterase 1 OS=Pongo abelii GN=LYP... [more]
LYPA1_HUMAN5.989e-1735.37Acyl-protein thioesterase 1 OS=Homo sapiens GN=LYP... [more]
APT11_DICDI1.334e-1631.10Acyl-protein thioesterase 1 homolog 1 OS=Dictyoste... [more]
LYPA1_RAT2.972e-1636.05Acyl-protein thioesterase 1 OS=Rattus norvegicus G... [more]

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Properties
Property NameValue
Genbank descriptionC32013G12EF RVDevelop1 Citrus clementina cDNA clone C32013G12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920853 ID=FC920853; Name=FC920853; organism=Citrus clementina; type=EST; length=699bp
GGGGCAACGAGAGAGAACTCTCCTCGTGGAGTTATCACATAGCTCTGGAG
TTCTTCTTCTGGATCTGTGCTCTTCTCAGTTACTTTACCTGCATTGGTGA
TAATCTTTCAAGGGTTAAAATGAGCTTTACAGGGCCATCCATGAGTTCTG
GGGGTAATACTGTTAGAAGAGCAATTGAGTTCGGAAGGACCTATGTGGTC
AGGCCCAAAGGTAAACACCAAGCCACTGTTGTGTGGCTTCATGGGCTTGG
CGATAATGGTTCAAGCTGGTCCCAGCTCCTCGAGACTCTTCCTCTTCCAA
ATATTAAATGGATTTGCCCAACTGCCCCTACTCGACCAATGACTATATTT
GGCGGCTTTCCATCCACTGCCTGGTTTGATGTGGGAGACCTTTCAGAAGA
TGTTCCTGATGACTTAGAGGGTTTAGATGCTGCAGCTGCACATGTTGTGA
ATTTATTGTCCACTGAGCCCACTGACATTAAACTTGGTGTTGGAGGTTTC
AGTATGGGAGCAGCAACCGCACTGTACTCTGCAACCTGCTTTGCCCATGG
AAAATATGGGAATGGCAATCCATACCCTGCTAAATTGAGTGCAGTTGTAG
GACTGAGTGGCTGGCTTCCTTGCTCAAAGACCTTGAAGAACAACTAGGTG
GAGAAATGAAGCTAGAGACGTGCTGCATCCTGCCCATTTGCTCTGCATG
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