FC920855

Overview
NameFC920855
Unique NameFC920855
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length728
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11037 contig Ccv1_Contig11037:1194..1921. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920855 vs. ExPASy Swiss-Prot
Match: P5CS_ACTDE (Delta-1-pyrroline-5-carboxylate synthetase OS=Actinidia deliciosa PE=2 SV=1)

HSP 1 Score: 355.91 bits (912), Expect = 1.263e-97
Identity = 183/243 (75.31%), Postives = 202/243 (83.13%), Query Frame = 1
Query:    1 GQILKRTDLADGLILEKTSCPLGVLLIVFESRPDALVQIASLAIRSGNGLLLKGGKEAMRSNAILHKVITSAIPDTVGEKLIGLVTSREEIPXXXXXXXXXXXXXPRGSNKLVSQIKESTKIPVLGHADGICHVYVDKSANLDVAKNIVIDAKIDYPAACNAMETLLVHKDLACNGALNELVVELQHEGVGLFGGPRASKLLKIPETRLFHHEYNSMVCTVEIVDDVRAAID-IFITWKCHTD 726
            G +LKRT++ DGL+LEKTS PLGVLLI+FESRPDALVQIASLAIRSGNGL+LKGGKEA RSNAILHKVITSAIP+ VG +LIGLVTSREEIP             PRGSNKLVSQIKESTKIPVLGHADGICHVYVDKSAN+D+AK +V+DAK DYPAACNAMETLLVHKDL  NG L+EL+VELQ +GV + GGPRAS LL IPE R  HHEY+S+ CT+EIVDDV AAID I      HTD
Sbjct:  384 GHVLKRTEITDGLVLEKTSSPLGVLLIIFESRPDALVQIASLAIRSGNGLVLKGGKEAKRSNAILHKVITSAIPENVGPRLIGLVTSREEIPDLLKLDDVIDLVIPRGSNKLVSQIKESTKIPVLGHADGICHVYVDKSANMDMAKKVVLDAKTDYPAACNAMETLLVHKDLVQNGCLDELIVELQIKGVVIHGGPRASSLLHIPEARSLHHEYSSLACTIEIVDDVYAAIDHIHRHGSAHTD 626          
BLAST of FC920855 vs. ExPASy Swiss-Prot
Match: P5CS_SOLLC (Delta-1-pyrroline-5-carboxylate synthetase OS=Solanum lycopersicum GN=PRO2 PE=2 SV=1)

HSP 1 Score: 352.829 bits (904), Expect = 1.069e-96
Identity = 181/243 (74.49%), Postives = 203/243 (83.54%), Query Frame = 1
Query:    1 GQILKRTDLADGLILEKTSCPLGVLLIVFESRPDALVQIASLAIRSGNGLLLKGGKEAMRSNAILHKVITSAIPDTVGEKLIGLVTSREEIPXXXXXXXXXXXXXPRGSNKLVSQIKESTKIPVLGHADGICHVYVDKSANLDVAKNIVIDAKIDYPAACNAMETLLVHKDLACNGALNELVVELQHEGVGLFGGPRASKLLKIPETRLFHHEYNSMVCTVEIVDDVRAAID-IFITWKCHTD 726
            G  LKRT++ADG ILEK+S PLGV+LI+FESRPDALVQIASLA+RSGNGL+LKGGKEA RSNAILHKVITSAIP +VGE+LIGLVTSREEIP             PRGSNKLVSQIK STKIPVLGHADGICHVYVDKSA++D+AK I +DAKIDYPAACNAMETLLVHKDLA NG LN+L+VELQ +GV L+GGP+AS LL IPE R F HEY+S+ CTVE+V+DV AAID I      HTD
Sbjct:  384 GHTLKRTEIADGFILEKSSSPLGVVLIIFESRPDALVQIASLAVRSGNGLMLKGGKEAKRSNAILHKVITSAIPVSVGERLIGLVTSREEIPELLKLDDVIDLVIPRGSNKLVSQIKASTKIPVLGHADGICHVYVDKSADMDMAKRITVDAKIDYPAACNAMETLLVHKDLAQNGGLNDLIVELQTKGVSLYGGPKASSLLMIPEARTFRHEYSSLACTVEVVEDVYAAIDHIHQHGSAHTD 626          
BLAST of FC920855 vs. ExPASy Swiss-Prot
Match: P5CS_MESCR (Delta-1-pyrroline-5-carboxylate synthetase OS=Mesembryanthemum crystallinum GN=P5CS PE=2 SV=1)

HSP 1 Score: 349.362 bits (895), Expect = 1.182e-95
Identity = 186/245 (75.92%), Postives = 203/245 (82.86%), Query Frame = 1
Query:    1 GQILKRTDLADGLILEKTSCPLGVLLIVFESRPDALVQIASLAIRSGNGLLLKGGKEAMRSNAILHKVITSAIPDTVGEKLIGLVTSREEIPXXXXXXXXXXXXXPRGSNKLVSQIKESTKIPVLGHADGICHVYVDKSANLDVAKNIVIDAKIDYPAACNAMETLLVHKDLACNGALNELVVELQHEGVGLFGGPRASKL--LKIPETRLFHHEYNSMVCTVEIVDDVRAAID-IFITWKCHTD 726
            G+ILKRT++ADGLILEKTSCPLGVLLIVFESRPDALVQIASLAIRSGNGLLLKGGKEA RSNAILHKVITSAIPD VGEKLIGLVTSR+EIP             PRGSNKLVSQIKEST+IPVLGHADGICHVYVDKSAN+D+AK IV+DAK DYPAACNAMETLLVHKDLA NG LN+L+V+L+ EGV +FGGPR   L    I  T+ F+ EY+S  CTVEIVDDV AAI+ I      HTD
Sbjct:  381 GRILKRTEIADGLILEKTSCPLGVLLIVFESRPDALVQIASLAIRSGNGLLLKGGKEAKRSNAILHKVITSAIPDKVGEKLIGLVTSRDEIPDLLKLDDVIDLVIPRGSNKLVSQIKESTRIPVLGHADGICHVYVDKSANMDMAKRIVLDAKTDYPAACNAMETLLVHKDLAENGGLNDLIVDLRTEGVTMFGGPRIDALQEFNIQATQTFNREYSSPACTVEIVDDVYAAIEHINHHGSAHTD 625          
BLAST of FC920855 vs. ExPASy Swiss-Prot
Match: P5CS_VIGAC (Delta-1-pyrroline-5-carboxylate synthetase OS=Vigna aconitifolia PE=2 SV=1)

HSP 1 Score: 346.665 bits (888), Expect = 7.662e-95
Identity = 180/243 (74.07%), Postives = 200/243 (82.30%), Query Frame = 1
Query:    1 GQILKRTDLADGLILEKTSCPLGVLLIVFESRPDALVQIASLAIRSGNGLLLKGGKEAMRSNAILHKVITSAIPDTVGEKLIGLVTSREEIPXXXXXXXXXXXXXPRGSNKLVSQIKESTKIPVLGHADGICHVYVDKSANLDVAKNIVIDAKIDYPAACNAMETLLVHKDLACNGALNELVVELQHEGVGLFGGPRASKLLKIPETRLFHHEYNSMVCTVEIVDDVRAAID-IFITWKCHTD 726
            G++LKRT+L+DGLILEKTS PLGVLLIVFESRPDALVQIASLAIRSGNGLLLKGGKEA RSNAILHKVI  AIPD VG KLIGLVTSREEIP             PRGSNKLVSQIK STKIPVLGHADGICHVYVDKSAN+++AK IV+DAK+DYPAACNAMETLL+HKDL   G L E++++L+ EGV L+GGP AS LL IP+   FHHEY+S+ CT EIVDDV AAID I +    HTD
Sbjct:  385 GRVLKRTELSDGLILEKTSSPLGVLLIVFESRPDALVQIASLAIRSGNGLLLKGGKEAKRSNAILHKVIIEAIPDNVGGKLIGLVTSREEIPELLKLDDVIDLVIPRGSNKLVSQIKSSTKIPVLGHADGICHVYVDKSANVEMAKRIVLDAKVDYPAACNAMETLLIHKDLIEKGWLKEIILDLRTEGVILYGGPVASSLLNIPQAHSFHHEYSSLACTAEIVDDVYAAIDHINLYGSAHTD 627          
BLAST of FC920855 vs. ExPASy Swiss-Prot
Match: P5CS2_ARATH (Delta-1-pyrroline-5-carboxylate synthetase B OS=Arabidopsis thaliana GN=P5CSB PE=2 SV=1)

HSP 1 Score: 343.199 bits (879), Expect = 8.471e-94
Identity = 181/243 (74.49%), Postives = 197/243 (81.07%), Query Frame = 1
Query:    1 GQILKRTDLADGLILEKTSCPLGVLLIVFESRPDALVQIASLAIRSGNGLLLKGGKEAMRSNAILHKVITSAIPDTVGEKLIGLVTSREEIPXXXXXXXXXXXXXPRGSNKLVSQIKESTKIPVLGHADGICHVYVDKSANLDVAKNIVIDAKIDYPAACNAMETLLVHKDLACNGALNELVVELQHEGVGLFGGPRASKLLKIPETRLFHHEYNSMVCTVEIVDDVRAAID-IFITWKCHTD 726
            G++LK+T +AD LILEKTS P+GVLLIVFESRPDALVQIASLAIRSGNGLLLKGGKEA RSNAILHKVIT AIP+TVG KLIGLVTSREEIP             PRGSNKLVSQIK STKIPVLGHADGICHVYVDKS  LD+AK IV DAK+DYPAACNAMETLLVHKDL  NG L++L+  LQ +GV L+GGPRAS  L IPET+ FHHEY+S  CTVEIV+DV  AID I      HTD
Sbjct:  384 GRVLKKTQVADDLILEKTSSPIGVLLIVFESRPDALVQIASLAIRSGNGLLLKGGKEARRSNAILHKVITDAIPETVGGKLIGLVTSREEIPDLLKLDDVIDLVIPRGSNKLVSQIKNSTKIPVLGHADGICHVYVDKSGKLDMAKRIVSDAKLDYPAACNAMETLLVHKDLEQNGFLDDLIYVLQTKGVTLYGGPRASAKLNIPETKSFHHEYSSKACTVEIVEDVYGAIDHIHQHGSAHTD 626          
BLAST of FC920855 vs. ExPASy Swiss-Prot
Match: P5CS1_ARATH (Delta-1-pyrroline-5-carboxylate synthetase A OS=Arabidopsis thaliana GN=P5CSA PE=1 SV=1)

HSP 1 Score: 341.273 bits (874), Expect = 3.219e-93
Identity = 177/243 (72.84%), Postives = 197/243 (81.07%), Query Frame = 1
Query:    1 GQILKRTDLADGLILEKTSCPLGVLLIVFESRPDALVQIASLAIRSGNGLLLKGGKEAMRSNAILHKVITSAIPDTVGEKLIGLVTSREEIPXXXXXXXXXXXXXPRGSNKLVSQIKESTKIPVLGHADGICHVYVDKSANLDVAKNIVIDAKIDYPAACNAMETLLVHKDLACNGALNELVVELQHEGVGLFGGPRASKLLKIPETRLFHHEYNSMVCTVEIVDDVRAAID-IFITWKCHTD 726
            G++LK+T++ADGL+LEKTS PLGVLLIVFESRPDALVQIASLAIRSGNGLLLKGGKEA RSNAILHKVIT AIP+TVG KLIGLVTSREEIP             PRGSNKLV+QIK +TKIPVLGHADGICHVYVDK+ + D+AK IV DAK+DYPAACNAMETLLVHKDL  N  LNEL+  LQ  GV L+GGPRASK+L IPE R F+HEY +  CTVE+V+DV  AID I      HTD
Sbjct:  384 GRVLKKTEVADGLVLEKTSSPLGVLLIVFESRPDALVQIASLAIRSGNGLLLKGGKEARRSNAILHKVITDAIPETVGGKLIGLVTSREEIPDLLKLDDVIDLVIPRGSNKLVTQIKNTTKIPVLGHADGICHVYVDKACDTDMAKRIVSDAKLDYPAACNAMETLLVHKDLEQNAVLNELIFALQSNGVTLYGGPRASKILNIPEARSFNHEYCAKACTVEVVEDVYGAIDHIHRHGSAHTD 626          
BLAST of FC920855 vs. ExPASy Swiss-Prot
Match: P5CS_ORYSJ (Delta-1-pyrroline-5-carboxylate synthetase OS=Oryza sativa subsp. japonica GN=P5CS PE=2 SV=2)

HSP 1 Score: 333.954 bits (855), Expect = 5.139e-91
Identity = 173/242 (71.49%), Postives = 198/242 (81.82%), Query Frame = 1
Query:    4 QILKRTDLADGLILEKTSCPLGVLLIVFESRPDALVQIASLAIRSGNGLLLKGGKEAMRSNAILHKVITSAIPDTVGEKLIGLVTSREEIPXXXXXXXXXXXXXPRGSNKLVSQIKESTKIPVLGHADGICHVYVDKSANLDVAKNIVIDAKIDYPAACNAMETLLVHKDLACNGALNELVVELQHEGVGLFGGPRASKLLKIPETRLFHHEYNSMVCTVEIVDDVRAAID-IFITWKCHTD 726
            QILK+T++AD L+LEKTSCPLGVLLIVFESRPDALVQIASLAIRSGNGLLLKGGKEA+RSN ILHKVIT AIP  VGEKLIGLVT+R+EI              PRGSNKLVSQIK STKIPVLGHADGICHVY+DKSA++D+AK+IV+DAKIDYPAACNAMETLLVHKDL  +  L++++V L+ EGV ++GGP A K L  P+   FHHEY+SM CTVE VDDV++AID I      HTD
Sbjct:  385 QILKKTEVADDLVLEKTSCPLGVLLIVFESRPDALVQIASLAIRSGNGLLLKGGKEAIRSNTILHKVITDAIPRNVGEKLIGLVTTRDEIADLLKLDDVIDLVIPRGSNKLVSQIKASTKIPVLGHADGICHVYIDKSADMDMAKHIVMDAKIDYPAACNAMETLLVHKDLMKSPGLDDILVALKTEGVNIYGGPIAHKALGFPKAVSFHHEYSSMACTVEFVDDVQSAIDHIHRYGSAHTD 626          
BLAST of FC920855 vs. ExPASy Swiss-Prot
Match: PROA_SYNY3 (Probable gamma-glutamyl phosphate reductase OS=Synechocystis sp. (strain PCC 6803) GN=proA PE=3 SV=1)

HSP 1 Score: 199.904 bits (507), Expect = 1.158e-50
Identity = 111/235 (47.23%), Postives = 155/235 (65.96%), Query Frame = 1
Query:    1 GQILKRTDLADGLILEKTSCPLGVLLIVFESRPDALVQIASLAIRSGNGLLLKGGKEAMRSNAILHKVITSAIPDTV-GEKLIGLVTSREEIPXXXXXXXXXXXXXPRGSNKLVSQIKESTKIPVLGHADGICHVYVDKSANLDVAKNIVIDAKIDYPAACNAMETLLVHKDLACNGALNELVVELQHEGVGLFGGPRASKLLKI-PETRL-FHHEYNSMVCTVEIVDDVRAAID 696
            GQ+     L +GL+L++  CPLGVL ++FE+RP+AL+QI+SLAI+SGN ++LKGG+EA RS  +L +VI +A+  TV   + I L+T+REEI              PRGSN+ V  I+++T+IPVLGHADGICH+Y+D  A+L  A  I +DAK  YPAACNA+ETLLVH+ +A    L  L   L  +GV L G     KL+   P T   +  EY+ ++ +++IVD + AAID
Sbjct:   99 GQVTLHRQLDEGLVLKRVGCPLGVLGVIFEARPEALIQISSLAIKSGNAVILKGGREATRSCQVLTEVIQTALAKTVVSPEAINLLTTREEIRELLGLNQYVDLIIPRGSNEFVQYIQQNTQIPVLGHADGICHLYLDAQADLSKAIPITVDAKTQYPAACNAIETLLVHQAIAAE-FLPPLAQALGEKGVSLRGDSGTQKLIDCEPATEADWCTEYSDLILSIKIVDSLEAAID 332          
BLAST of FC920855 vs. ExPASy Swiss-Prot
Match: P5CS_PONAB (Delta-1-pyrroline-5-carboxylate synthetase OS=Pongo abelii GN=ALDH18A1 PE=2 SV=1)

HSP 1 Score: 199.519 bits (506), Expect = 1.513e-50
Identity = 108/246 (43.90%), Postives = 157/246 (63.82%), Query Frame = 1
Query:    1 GQILKRTDLADGLILEKTSCPLGVLLIVFESRPDALVQIASLAIRSGNGLLLKGGKEAMRSNAILHKVITSAIPDTVGEKLIGLVTSREEIPXXXXXXXXXXXXXPRGSNKLVSQIKESTK-IPVLGHADGICHVYVDKSANLDVAKNIVIDAKIDYPAACNAMETLLVHKDLACNGALNELVVELQHEGVGLFGGPRASKLLKI--PETRLFHHEYNSMVCTVEIVDDVRAAID-IFITWKCHTD 726
            G++L+RT +A  L LE+ + P+GVLL++FESRPD L Q+A+LAI SGNGLLLKGGKEA  SN ILH +   A+     ++ + LV +REE+              PRGS++LV  I+++ K IPV+GH++GICH+YVD  A++D    +V D+K +YPAACNA+ETLL+H+DL      ++++  L+ E V +  GP+ +  L     E +    EY  +   +E+VD+V+ AID I      HTD
Sbjct:  452 GRVLRRTRIAKNLELEQVTVPIGVLLVIFESRPDCLPQVAALAIASGNGLLLKGGKEAAHSNRILHLLTQEALSIHGVKEAVQLVNTREEVEDLCRLDKMIDLIIPRGSSQLVRDIQKAAKGIPVMGHSEGICHMYVDSEASVDKVTRLVRDSKCEYPAACNALETLLIHRDLLRTPLFDQIIDMLRVEQVKIHAGPKFASYLTFSPSEVKSLRTEYGDLELCIEVVDNVQDAIDHIHKYGSSHTD 697          
BLAST of FC920855 vs. ExPASy Swiss-Prot
Match: P5CS_HUMAN (Delta-1-pyrroline-5-carboxylate synthetase OS=Homo sapiens GN=ALDH18A1 PE=1 SV=2)

HSP 1 Score: 199.519 bits (506), Expect = 1.513e-50
Identity = 108/246 (43.90%), Postives = 157/246 (63.82%), Query Frame = 1
Query:    1 GQILKRTDLADGLILEKTSCPLGVLLIVFESRPDALVQIASLAIRSGNGLLLKGGKEAMRSNAILHKVITSAIPDTVGEKLIGLVTSREEIPXXXXXXXXXXXXXPRGSNKLVSQIKESTK-IPVLGHADGICHVYVDKSANLDVAKNIVIDAKIDYPAACNAMETLLVHKDLACNGALNELVVELQHEGVGLFGGPRASKLLKI--PETRLFHHEYNSMVCTVEIVDDVRAAID-IFITWKCHTD 726
            G++L+RT +A  L LE+ + P+GVLL++FESRPD L Q+A+LAI SGNGLLLKGGKEA  SN ILH +   A+     ++ + LV +REE+              PRGS++LV  I+++ K IPV+GH++GICH+YVD  A++D    +V D+K +YPAACNA+ETLL+H+DL      ++++  L+ E V +  GP+ +  L     E +    EY  +   +E+VD+V+ AID I      HTD
Sbjct:  452 GRVLRRTRIAKNLELEQVTVPIGVLLVIFESRPDCLPQVAALAIASGNGLLLKGGKEAAHSNRILHLLTQEALSIHGVKEAVQLVNTREEVEDLCRLDKMIDLIIPRGSSQLVRDIQKAAKGIPVMGHSEGICHMYVDSEASVDKVTRLVRDSKCEYPAACNALETLLIHRDLLRTPLFDQIIDMLRVEQVKIHAGPKFASYLTFSPSEVKSLRTEYGDLELCIEVVDNVQDAIDHIHKYGSSHTD 697          
The following BLAST results are available for this feature:
BLAST of FC920855 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
P5CS_ACTDE1.263e-9775.31Delta-1-pyrroline-5-carboxylate synthetase OS=Acti... [more]
P5CS_SOLLC1.069e-9674.49Delta-1-pyrroline-5-carboxylate synthetase OS=Sola... [more]
P5CS_MESCR1.182e-9575.92Delta-1-pyrroline-5-carboxylate synthetase OS=Mese... [more]
P5CS_VIGAC7.662e-9574.07Delta-1-pyrroline-5-carboxylate synthetase OS=Vign... [more]
P5CS2_ARATH8.471e-9474.49Delta-1-pyrroline-5-carboxylate synthetase B OS=Ar... [more]
P5CS1_ARATH3.219e-9372.84Delta-1-pyrroline-5-carboxylate synthetase A OS=Ar... [more]
P5CS_ORYSJ5.139e-9171.49Delta-1-pyrroline-5-carboxylate synthetase OS=Oryz... [more]
PROA_SYNY31.158e-5047.23Probable gamma-glutamyl phosphate reductase OS=Syn... [more]
P5CS_PONAB1.513e-5043.90Delta-1-pyrroline-5-carboxylate synthetase OS=Pong... [more]
P5CS_HUMAN1.513e-5043.90Delta-1-pyrroline-5-carboxylate synthetase OS=Homo... [more]

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Properties
Property NameValue
Genbank descriptionC32013H03EF RVDevelop1 Citrus clementina cDNA clone C32013H03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920855 ID=FC920855; Name=FC920855; organism=Citrus clementina; type=EST; length=728bp
GGTCAAATTTTAAAGAGAACAGACCTTGCGGATGGACTCATCCTGGAGAA
AACATCATGTCCTTTGGGCGTCCTCTTGATAGTATTTGAATCTCGACCTG
ATGCCCTGGTCCAGATAGCTTCATTGGCCATTCGGAGTGGAAATGGTCTA
CTACTGAAAGGAGGAAAAGAAGCTATGCGGTCAAATGCAATCTTGCACAA
GGTCATCACCTCAGCTATCCCAGATACTGTTGGTGAGAAACTTATTGGAC
TTGTGACTTCCAGGGAAGAGATTCCTGATTTGCTCAAGCTTGATGATGTG
ATAGATCTTGTTATCCCCAGAGGCAGCAATAAGCTTGTTTCTCAAATCAA
GGAGTCAACAAAAATTCCTGTACTTGGTCATGCTGATGGAATTTGTCATG
TTTATGTTGATAAATCGGCTAACCTTGATGTGGCAAAGAACATTGTTATT
GATGCGAAGATAGACTATCCTGCAGCCTGCAATGCTATGGAAACTCTTCT
GGTACACAAGGATTTAGCATGCAATGGTGCACTCAATGAGCTTGTTGTAG
AACTTCAACATGAAGGTGTCGGTTTATTTGGCGGACCAAGAGCAAGTAAA
TTACTAAAAATTCCTGAGACACGCTTATTCCATCATGAGTACAACTCAAT
GGTTTGTACGGTTGAAATTGTGGACGATGTGCGTGCTGCTATTGACATAT
TCATCACATGGAAGTGCCATACTGATGC
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