FC920856

Overview
NameFC920856
Unique NameFC920856
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length282
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC920856_ssr108 microsatellite FC920856_ssr108:108..117. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig8454 contig Ccv1_Contig8454:542..823. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC920856 vs. ExPASy Swiss-Prot
Match: RL15B_PICMA (60S ribosomal protein L15-2 OS=Picea mariana GN=SB62 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 3.114e-17
Identity = 39/43 (90.70%), Postives = 42/43 (97.67%), Query Frame = 2 
Query:    2 RGLTSAGKKYRGLRGKGHLHHKARPSRRATWKRNQTLSLRRYR 130
            RGLTSAGKKYRGLRG+GHL+HKARPS+RATWKRN TLSLRRYR
Sbjct:  162 RGLTSAGKKYRGLRGRGHLYHKARPSKRATWKRNNTLSLRRYR 204
[Close]
BLAST of FC920856 vs. ExPASy Swiss-Prot
Match: RL15A_PICMA (60S ribosomal protein L15-1 OS=Picea mariana GN=SB61 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 3.114e-17
Identity = 39/43 (90.70%), Postives = 42/43 (97.67%), Query Frame = 2 
Query:    2 RGLTSAGKKYRGLRGKGHLHHKARPSRRATWKRNQTLSLRRYR 130
            RGLTSAGKKYRGLRG+GHL+HKARPS+RATWKRN TLSLRRYR
Sbjct:  162 RGLTSAGKKYRGLRGRGHLYHKARPSKRATWKRNNTLSLRRYR 204
[Close]
BLAST of FC920856 vs. ExPASy Swiss-Prot
Match: RL15_PETHY (60S ribosomal protein L15 OS=Petunia hybrida GN=RPL15 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 7.671e-16
Identity = 38/43 (88.37%), Postives = 40/43 (93.02%), Query Frame = 2 
Query:    2 RGLTSAGKKYRGLRGKGHLHHKARPSRRATWKRNQTLSLRRYR 130
            RGLTSAGKKYRGLRG+GHLH+KA PSRRA WKRNQTLSL RYR
Sbjct:  162 RGLTSAGKKYRGLRGRGHLHNKAPPSRRANWKRNQTLSLPRYR 204
[Close]
BLAST of FC920856 vs. ExPASy Swiss-Prot
Match: RL151_ARATH (60S ribosomal protein L15-1 OS=Arabidopsis thaliana GN=RPL15A PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.179e-14
Identity = 35/43 (81.40%), Postives = 38/43 (88.37%), Query Frame = 2 
Query:    2 RGLTSAGKKYRGLRGKGHLHHKARPSRRATWKRNQTLSLRRYR 130
            RGLTS GKK RGLRGKGH +HK RPSRRATWK+N +LSLRRYR
Sbjct:  162 RGLTSEGKKNRGLRGKGHNNHKNRPSRRATWKKNNSLSLRRYR 204
[Close]
BLAST of FC920856 vs. ExPASy Swiss-Prot
Match: RL152_ARATH (60S ribosomal protein L15-2 OS=Arabidopsis thaliana GN=RPL15B PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.225e-13
Identity = 34/43 (79.07%), Postives = 38/43 (88.37%), Query Frame = 2 
Query:    2 RGLTSAGKKYRGLRGKGHLHHKARPSRRATWKRNQTLSLRRYR 130
            RGLTS GKK RGLRGKGH +HK RPSRRATWK+N ++SLRRYR
Sbjct:  162 RGLTSEGKKNRGLRGKGHNNHKNRPSRRATWKKNNSISLRRYR 204
The following BLAST results are available for this feature:
BLAST of FC920856 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
RL15B_PICMA3.114e-1790.7060S ribosomal protein L15-2 OS=Picea mariana GN=SB... [more]
RL15A_PICMA3.114e-1790.7060S ribosomal protein L15-1 OS=Picea mariana GN=SB... [more]
RL15_PETHY7.671e-1688.3760S ribosomal protein L15 OS=Petunia hybrida GN=RP... [more]
RL151_ARATH7.179e-1481.4060S ribosomal protein L15-1 OS=Arabidopsis thalian... [more]
RL152_ARATH1.225e-1379.0760S ribosomal protein L15-2 OS=Arabidopsis thalian... [more]
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Properties
Property NameValue
Genbank descriptionC32013H04EF RVDevelop1 Citrus clementina cDNA clone C32013H04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920856 ID=FC920856; Name=FC920856; organism=Citrus clementina; type=EST; length=282bp
TCGTGGACTCACTTCTGCTGGGAAGAAGTACAGAGGTCTCCGAGGAAAGG
GTCACTTGCACCACAAGGCACGACCTTCAAGAAGGGCAACCTGGAAGAGG
AACCAAACTCTCTCTCTCAGGCGTTACCGTTAAACTTCTGTATTGTTTAC
TTTGTGTTTTTCACATTATCAACCTAGTTTAATTGCTGTTGAGTTTGAAC
TCCGAAACAAGTGTTTTGGGTTAGTTTTTGCTGCAACATGGTTAATTTTG
TTTCGAAAAAAAAAAAAAAAAAAAAAAAAAAA
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