FC920857

Overview
NameFC920857
Unique NameFC920857
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length669
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14097 contig Ccv1_Contig14097:52..720. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC920857 vs. ExPASy Swiss-Prot
Match: ERF1Z_ARATH (Eukaryotic peptide chain release factor subunit 1-3 OS=Arabidopsis thaliana GN=ERF1-3 PE=2 SV=1)

HSP 1 Score: 312.768 bits (800), Expect = 1.048e-84
Identity = 154/164 (93.90%), Postives = 161/164 (98.17%), Query Frame = 2 
Query:  176 QETDKNIEIWKIKKLIKALESARGNGTSMISLIMPPRDQISRVTKMLGDEFGTASNIKSRVNRQSVLAAITSAQQRLKLYNKVPPNGLVLYTGTVVTDDGKEKKVTIDFEPFKPINASLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVL 667
            QE+DKNIEIWKIKKLIK LE+ARGNGTSMISLIMPPRDQ++RVTKML DE+GTASNIKSRVNRQSVL+AITSAQQRLKLYNKVPPNGLVLYTGT+VTDDGKEKKVTIDFEPFKPINASLYLCDNKFHTE LNELLESDDKFGFIVMDGNGTLFGTLSGNTREVL
Sbjct:    4 QESDKNIEIWKIKKLIKGLETARGNGTSMISLIMPPRDQVARVTKMLADEYGTASNIKSRVNRQSVLSAITSAQQRLKLYNKVPPNGLVLYTGTIVTDDGKEKKVTIDFEPFKPINASLYLCDNKFHTEPLNELLESDDKFGFIVMDGNGTLFGTLSGNTREVL 167
[Close]
BLAST of FC920857 vs. ExPASy Swiss-Prot
Match: ERF1X_ARATH (Eukaryotic peptide chain release factor subunit 1-1 OS=Arabidopsis thaliana GN=ERF1-1 PE=2 SV=2)

HSP 1 Score: 311.997 bits (798), Expect = 1.788e-84
Identity = 153/168 (91.07%), Postives = 162/168 (96.43%), Query Frame = 2 
Query:  164 MSDGQETDKNIEIWKIKKLIKALESARGNGTSMISLIMPPRDQISRVTKMLGDEFGTASNIKSRVNRQSVLAAITSAQQRLKLYNKVPPNGLVLYTGTVVTDDGKEKKVTIDFEPFKPINASLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVL 667
            M D  + DKNIEIWKIKKLIK+LE+ARGNGTSMISLIMPPRDQ+SRVTKMLGDE+GTASNIKSRVNRQSVL AITSAQQRLKLYN+VPPNGLVLYTGT+V +DGKEKKVTIDFEPF+PINASLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVL
Sbjct:    1 MGDKNDDDKNIEIWKIKKLIKSLEAARGNGTSMISLIMPPRDQVSRVTKMLGDEYGTASNIKSRVNRQSVLGAITSAQQRLKLYNRVPPNGLVLYTGTIVNEDGKEKKVTIDFEPFRPINASLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVL 168
[Close]
BLAST of FC920857 vs. ExPASy Swiss-Prot
Match: ERF1Y_ARATH (Eukaryotic peptide chain release factor subunit 1-2 OS=Arabidopsis thaliana GN=ERF1-2 PE=2 SV=1)

HSP 1 Score: 307.76 bits (787), Expect = 3.373e-83
Identity = 152/164 (92.68%), Postives = 158/164 (96.34%), Query Frame = 2 
Query:  176 QETDKNIEIWKIKKLIKALESARGNGTSMISLIMPPRDQISRVTKMLGDEFGTASNIKSRVNRQSVLAAITSAQQRLKLYNKVPPNGLVLYTGTVVTDDGKEKKVTIDFEPFKPINASLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVL 667
            +E D NIEIWKIKKLIK LESARGNGTSMISLIMPPRDQ+SRVTKMLGDE+GTASNIKSRVNRQSVL+AITSAQQRLKLYNKVP NGLVLYTGT+V DDGKEKKVT DFEPF+PINASLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVL
Sbjct:    3 EEADTNIEIWKIKKLIKGLESARGNGTSMISLIMPPRDQVSRVTKMLGDEYGTASNIKSRVNRQSVLSAITSAQQRLKLYNKVPTNGLVLYTGTIVNDDGKEKKVTFDFEPFRPINASLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVL 166
[Close]
BLAST of FC920857 vs. ExPASy Swiss-Prot
Match: ERF1_POLMI (Eukaryotic peptide chain release factor subunit 1 OS=Polyandrocarpa misakiensis GN=ERF1 PE=2 SV=1)

HSP 1 Score: 280.411 bits (716), Expect = 5.766e-75
Identity = 136/161 (84.47%), Postives = 147/161 (91.30%), Query Frame = 2 
Query:  185 DKNIEIWKIKKLIKALESARGNGTSMISLIMPPRDQISRVTKMLGDEFGTASNIKSRVNRQSVLAAITSAQQRLKLYNKVPPNGLVLYTGTVVTDDGKEKKVTIDFEPFKPINASLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVL 667
            D+N+EIWKIKKLIK+LE+ARGNGTSMISLI+PP+DQ+SRV KML DEFGTASNIKSRVNR SVL AITS QQRLKLYNKVPPNGLV+Y GT+VTD+GKEKKV IDFEPFKPIN SLYLCDNKFHTEAL  LL  D+KFGFIVMDGNG LFGTL GNTREVL
Sbjct:    9 DRNVEIWKIKKLIKSLEAARGNGTSMISLIIPPKDQVSRVAKMLADEFGTASNIKSRVNRLSVLGAITSVQQRLKLYNKVPPNGLVVYCGTIVTDEGKEKKVNIDFEPFKPINTSLYLCDNKFHTEALTALLSDDNKFGFIVMDGNGALFGTLQGNTREVL 169
[Close]
BLAST of FC920857 vs. ExPASy Swiss-Prot
Match: ERF1_PODAN (Eukaryotic peptide chain release factor subunit 1 OS=Podospora anserina GN=SU2 PE=3 SV=1)

HSP 1 Score: 277.715 bits (709), Expect = 3.738e-74
Identity = 136/170 (80.00%), Postives = 152/170 (89.41%), Query Frame = 2 
Query:  164 MSD--GQETDKNIEIWKIKKLIKALESARGNGTSMISLIMPPRDQISRVTKMLGDEFGTASNIKSRVNRQSVLAAITSAQQRLKLYNKVPPNGLVLYTGTVVTDDGKEKKVTIDFEPFKPINASLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVL 667
            MSD    E +KNIEIWK+KKLIK LE+ARGNGTSMISLI+PP+DQISR  KML +E+GTASNIKSRVNRQSVL+AITS QQRLKLYNKVPPNGLV+Y G ++T +GKE+KV IDFEPFKPIN SLYLCDNKFHTEAL ELLESD KFGFIVMDGNG LFGTLSGNTR+++
Sbjct:    1 MSDPNANEAEKNIEIWKVKKLIKRLEAARGNGTSMISLIIPPKDQISRAAKMLAEEYGTASNIKSRVNRQSVLSAITSTQQRLKLYNKVPPNGLVVYCGEILTSEGKERKVNIDFEPFKPINTSLYLCDNKFHTEALAELLESDQKFGFIVMDGNGALFGTLSGNTRDIV 170
[Close]
BLAST of FC920857 vs. ExPASy Swiss-Prot
Match: ERF1_XENTR (Eukaryotic peptide chain release factor subunit 1 OS=Xenopus tropicalis GN=etf1 PE=2 SV=1)

HSP 1 Score: 276.559 bits (706), Expect = 8.327e-74
Identity = 135/166 (81.33%), Postives = 147/166 (88.55%), Query Frame = 2 
Query:  170 DGQETDKNIEIWKIKKLIKALESARGNGTSMISLIMPPRDQISRVTKMLGDEFGTASNIKSRVNRQSVLAAITSAQQRLKLYNKVPPNGLVLYTGTVVTDDGKEKKVTIDFEPFKPINASLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVL 667
            D    D+N+EIWKIKKLIK+LE+ARGNGTSMISLI+PP+DQISRV KML DEFGTASNIKSRVNR SVL AITS QQRLKLYNKVPPNGLV+Y GT+VT++GKEKKV IDFEPFKPIN SLYLCDNKFHTEAL  LL  D KFGFIV+DG+G LFGTL GNTREVL
Sbjct:    4 DPSAADRNVEIWKIKKLIKSLEAARGNGTSMISLIIPPKDQISRVAKMLADEFGTASNIKSRVNRLSVLGAITSVQQRLKLYNKVPPNGLVVYCGTIVTEEGKEKKVNIDFEPFKPINTSLYLCDNKFHTEALTALLSDDSKFGFIVIDGSGALFGTLQGNTREVL 169
[Close]
BLAST of FC920857 vs. ExPASy Swiss-Prot
Match: ERF1_XENLA (Eukaryotic peptide chain release factor subunit 1 OS=Xenopus laevis GN=etf1 PE=2 SV=1)

HSP 1 Score: 276.559 bits (706), Expect = 8.327e-74
Identity = 135/166 (81.33%), Postives = 147/166 (88.55%), Query Frame = 2 
Query:  170 DGQETDKNIEIWKIKKLIKALESARGNGTSMISLIMPPRDQISRVTKMLGDEFGTASNIKSRVNRQSVLAAITSAQQRLKLYNKVPPNGLVLYTGTVVTDDGKEKKVTIDFEPFKPINASLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVL 667
            D    D+N+EIWKIKKLIK+LE+ARGNGTSMISLI+PP+DQISRV KML DEFGTASNIKSRVNR SVL AITS QQRLKLYNKVPPNGLV+Y GT+VT++GKEKKV IDFEPFKPIN SLYLCDNKFHTEAL  LL  D KFGFIV+DG+G LFGTL GNTREVL
Sbjct:    4 DPSAADRNVEIWKIKKLIKSLEAARGNGTSMISLIIPPKDQISRVAKMLADEFGTASNIKSRVNRLSVLGAITSVQQRLKLYNKVPPNGLVVYCGTIVTEEGKEKKVNIDFEPFKPINTSLYLCDNKFHTEALTALLSDDSKFGFIVIDGSGALFGTLQGNTREVL 169
[Close]
BLAST of FC920857 vs. ExPASy Swiss-Prot
Match: ERF1_RAT (Eukaryotic peptide chain release factor subunit 1 OS=Rattus norvegicus GN=Etf1 PE=2 SV=3)

HSP 1 Score: 276.559 bits (706), Expect = 8.327e-74
Identity = 135/166 (81.33%), Postives = 147/166 (88.55%), Query Frame = 2 
Query:  170 DGQETDKNIEIWKIKKLIKALESARGNGTSMISLIMPPRDQISRVTKMLGDEFGTASNIKSRVNRQSVLAAITSAQQRLKLYNKVPPNGLVLYTGTVVTDDGKEKKVTIDFEPFKPINASLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVL 667
            D    D+N+EIWKIKKLIK+LE+ARGNGTSMISLI+PP+DQISRV KML DEFGTASNIKSRVNR SVL AITS QQRLKLYNKVPPNGLV+Y GT+VT++GKEKKV IDFEPFKPIN SLYLCDNKFHTEAL  LL  D KFGFIV+DG+G LFGTL GNTREVL
Sbjct:    4 DPSAADRNVEIWKIKKLIKSLEAARGNGTSMISLIIPPKDQISRVAKMLADEFGTASNIKSRVNRLSVLGAITSVQQRLKLYNKVPPNGLVVYCGTIVTEEGKEKKVNIDFEPFKPINTSLYLCDNKFHTEALTALLSDDSKFGFIVIDGSGALFGTLQGNTREVL 169
[Close]
BLAST of FC920857 vs. ExPASy Swiss-Prot
Match: ERF1_RABIT (Eukaryotic peptide chain release factor subunit 1 OS=Oryctolagus cuniculus GN=ETF1 PE=2 SV=3)

HSP 1 Score: 276.559 bits (706), Expect = 8.327e-74
Identity = 135/166 (81.33%), Postives = 147/166 (88.55%), Query Frame = 2 
Query:  170 DGQETDKNIEIWKIKKLIKALESARGNGTSMISLIMPPRDQISRVTKMLGDEFGTASNIKSRVNRQSVLAAITSAQQRLKLYNKVPPNGLVLYTGTVVTDDGKEKKVTIDFEPFKPINASLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVL 667
            D    D+N+EIWKIKKLIK+LE+ARGNGTSMISLI+PP+DQISRV KML DEFGTASNIKSRVNR SVL AITS QQRLKLYNKVPPNGLV+Y GT+VT++GKEKKV IDFEPFKPIN SLYLCDNKFHTEAL  LL  D KFGFIV+DG+G LFGTL GNTREVL
Sbjct:    4 DPSAADRNVEIWKIKKLIKSLEAARGNGTSMISLIIPPKDQISRVAKMLADEFGTASNIKSRVNRLSVLGAITSVQQRLKLYNKVPPNGLVVYCGTIVTEEGKEKKVNIDFEPFKPINTSLYLCDNKFHTEALTALLSDDSKFGFIVIDGSGALFGTLQGNTREVL 169
[Close]
BLAST of FC920857 vs. ExPASy Swiss-Prot
Match: ERF1_PONAB (Eukaryotic peptide chain release factor subunit 1 OS=Pongo abelii GN=ETF1 PE=2 SV=3)

HSP 1 Score: 276.559 bits (706), Expect = 8.327e-74
Identity = 135/166 (81.33%), Postives = 147/166 (88.55%), Query Frame = 2 
Query:  170 DGQETDKNIEIWKIKKLIKALESARGNGTSMISLIMPPRDQISRVTKMLGDEFGTASNIKSRVNRQSVLAAITSAQQRLKLYNKVPPNGLVLYTGTVVTDDGKEKKVTIDFEPFKPINASLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVL 667
            D    D+N+EIWKIKKLIK+LE+ARGNGTSMISLI+PP+DQISRV KML DEFGTASNIKSRVNR SVL AITS QQRLKLYNKVPPNGLV+Y GT+VT++GKEKKV IDFEPFKPIN SLYLCDNKFHTEAL  LL  D KFGFIV+DG+G LFGTL GNTREVL
Sbjct:    4 DPSAADRNVEIWKIKKLIKSLEAARGNGTSMISLIIPPKDQISRVAKMLADEFGTASNIKSRVNRLSVLGAITSVQQRLKLYNKVPPNGLVVYCGTIVTEEGKEKKVNIDFEPFKPINTSLYLCDNKFHTEALTALLSDDSKFGFIVIDGSGALFGTLQGNTREVL 169
The following BLAST results are available for this feature:
BLAST of FC920857 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
ERF1Z_ARATH1.048e-8493.90Eukaryotic peptide chain release factor subunit 1-... [more]
ERF1X_ARATH1.788e-8491.07Eukaryotic peptide chain release factor subunit 1-... [more]
ERF1Y_ARATH3.373e-8392.68Eukaryotic peptide chain release factor subunit 1-... [more]
ERF1_POLMI5.766e-7584.47Eukaryotic peptide chain release factor subunit 1 ... [more]
ERF1_PODAN3.738e-7480.00Eukaryotic peptide chain release factor subunit 1 ... [more]
ERF1_XENTR8.327e-7481.33Eukaryotic peptide chain release factor subunit 1 ... [more]
ERF1_XENLA8.327e-7481.33Eukaryotic peptide chain release factor subunit 1 ... [more]
ERF1_RAT8.327e-7481.33Eukaryotic peptide chain release factor subunit 1 ... [more]
ERF1_RABIT8.327e-7481.33Eukaryotic peptide chain release factor subunit 1 ... [more]
ERF1_PONAB8.327e-7481.33Eukaryotic peptide chain release factor subunit 1 ... [more]

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Properties
Property NameValue
Genbank descriptionC32013H05EF RVDevelop1 Citrus clementina cDNA clone C32013H05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920857 ID=FC920857; Name=FC920857; organism=Citrus clementina; type=EST; length=669bp
GGCGGCCAAGGGACGGGATTCTCCTCCTTTAGAGATTTGTCATTGGAGGT
CTTTCTTGAAGGAAGGAGAGTGACAGAAGCCGACTTTTGCTGCTGCGCCG
TCGCCGATTACCTCTCTCATCTAGATTATATCACCGTTTCTGCAGTTTCA
ACCAGTACCCACAATGTCAGATGGTCAGGAAACCGATAAGAACATTGAGA
TATGGAAAATCAAAAAATTGATCAAGGCACTGGAATCTGCAAGAGGTAAT
GGAACCAGTATGATATCCCTTATTATGCCTCCCCGTGATCAAATTTCTCG
GGTCACGAAGATGCTTGGTGATGAATTTGGAACTGCTTCAAACATTAAAA
GTAGGGTCAACCGTCAGTCTGTTCTGGCTGCTATTACTTCTGCTCAGCAG
AGGCTGAAGCTATATAACAAGGTTCCTCCCAATGGGTTGGTGCTTTATAC
TGGAACAGTTGTTACTGACGACGGCAAGGAAAAGAAAGTGACAATTGACT
TTGAGCCTTTCAAGCCTATAAATGCATCGTTGTATCTCTGTGATAACAAG
TTTCACACTGAAGCCTTGAATGAACTCTTAGAATCTGATGACAAATTTGG
GTTTATTGTCATGGATGGAAATGGCACCCTATTTGGCACATTAAGTGGAA
ACACAAGAGAGGTGCTTCA
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