FC920862

Overview
NameFC920862
Unique NameFC920862
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length419
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920862 vs. ExPASy Swiss-Prot
Match: HS101_ORYSJ (Heat shock protein 101 OS=Oryza sativa subsp. japonica GN=HSP101 PE=2 SV=1)

HSP 1 Score: 248.825 bits (634), Expect = 6.195e-66
Identity = 124/139 (89.21%), Postives = 135/139 (97.12%), Query Frame = 2
Query:    2 QLTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLRKVARLQMKDVXIRLAERGVALAVTDA 418
            QLTE VRRRPYSV+LFDEVEKAH++VFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLL+GM+GK +M+VARD V+QEVR+HFRPELLNRLDEIV+FDPLSHEQLRKVARLQMKDV +RLAERGVALAVTDA
Sbjct:  663 QLTEQVRRRPYSVILFDEVEKAHVAVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLAGMVGKNSMKVARDLVMQEVRRHFRPELLNRLDEIVIFDPLSHEQLRKVARLQMKDVAVRLAERGVALAVTDA 801          
BLAST of FC920862 vs. ExPASy Swiss-Prot
Match: HS101_ARATH (Heat shock protein 101 OS=Arabidopsis thaliana GN=HSP101 PE=2 SV=2)

HSP 1 Score: 248.44 bits (633), Expect = 8.091e-66
Identity = 124/139 (89.21%), Postives = 135/139 (97.12%), Query Frame = 2
Query:    2 QLTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLRKVARLQMKDVXIRLAERGVALAVTDA 418
            QLTEAVRRRPY V+LFDEVEKAH++VFNTLLQVLDDGRLTDGQGRTVDFRN+VIIMTSNLGAEHLL+G+ GKVTM+VARD V++EVRKHFRPELLNRLDEIVVFDPLSH+QLRKVARLQMKDV +RLAERGVALAVTDA
Sbjct:  662 QLTEAVRRRPYCVILFDEVEKAHVAVFNTLLQVLDDGRLTDGQGRTVDFRNSVIIMTSNLGAEHLLAGLTGKVTMEVARDCVMREVRKHFRPELLNRLDEIVVFDPLSHDQLRKVARLQMKDVAVRLAERGVALAVTDA 800          
BLAST of FC920862 vs. ExPASy Swiss-Prot
Match: CLPB2_STRAW (Chaperone protein clpB 2 OS=Streptomyces avermitilis GN=clpB2 PE=3 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 2.291e-44
Identity = 88/140 (62.86%), Postives = 110/140 (78.57%), Query Frame = 2
Query:    2 QLTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQV-ARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLRKVARLQMKDVXIRLAERGVALAVTDA 418
            QLTEAVRR+PYSVVLFDE+EKAH  VFNTLLQ+LDDGR+TD QGRTVDFRNTVIIMTSN+G+EHLL G   +  ++  AR  V+ E+R HFRPE LNR+D+IV+F PL   Q+ ++  LQ  ++  RLAER + + +TDA
Sbjct:  669 QLTEAVRRKPYSVVLFDEIEKAHTDVFNTLLQILDDGRITDAQGRTVDFRNTVIIMTSNIGSEHLLDGATAEGEIKPDARALVMGELRGHFRPEFLNRVDDIVLFKPLGERQIERIVELQFDELRQRLAERRITVELTDA 808          
BLAST of FC920862 vs. ExPASy Swiss-Prot
Match: CLPB_THET8 (Chaperone protein clpB OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=clpB PE=1 SV=2)

HSP 1 Score: 174.096 bits (440), Expect = 1.939e-43
Identity = 85/139 (61.15%), Postives = 110/139 (79.14%), Query Frame = 2
Query:    2 QLTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLRKVARLQMKDVXIRLAERGVALAVTDA 418
            QLTEAVRRRPYSV+LFDE+EKAH  VFN LLQ+LDDGRLTD  GRTVDFRNTVII+TSNLG+  +L G+      +  RD+V + +++HFRPE LNRLDEIVVF PL+ EQ+R++  +Q+  +  RLAE+ ++L +T+A
Sbjct:  651 QLTEAVRRRPYSVILFDEIEKAHPDVFNILLQILDDGRLTDSHGRTVDFRNTVIILTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQLSYLRARLAEKRISLELTEA 789          
BLAST of FC920862 vs. ExPASy Swiss-Prot
Match: CLPB_THET2 (Chaperone protein clpB OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=clpB PE=3 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 1.939e-43
Identity = 85/139 (61.15%), Postives = 110/139 (79.14%), Query Frame = 2
Query:    2 QLTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLRKVARLQMKDVXIRLAERGVALAVTDA 418
            QLTEAVRRRPYSV+LFDE+EKAH  VFN LLQ+LDDGRLTD  GRTVDFRNTVII+TSNLG+  +L G+      +  RD+V + +++HFRPE LNRLDEIVVF PL+ EQ+R++  +Q+  +  RLAE+ ++L +T+A
Sbjct:  651 QLTEAVRRRPYSVILFDEIEKAHPDVFNILLQILDDGRLTDSHGRTVDFRNTVIILTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQLSYLRARLAEKRISLELTEA 789          
BLAST of FC920862 vs. ExPASy Swiss-Prot
Match: CLPB_MEIRU (Chaperone protein clpB OS=Meiothermus ruber GN=clpB PE=3 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 7.369e-43
Identity = 84/137 (61.31%), Postives = 108/137 (78.83%), Query Frame = 2
Query:    2 QLTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLRKVARLQMKDVXIRLAERGVALAVT 412
            QLTEAVRRRPYSV+LFDE+EKAH  VFN LLQVLDDGRLTDGQGRTVDFRNTVII+TSN+G+  +  G+    + +  R++V   +++HFRPE LNRLDEIVVF PL+ EQ+  + ++Q++ V  RLAER + L ++
Sbjct:  651 QLTEAVRRRPYSVILFDEIEKAHPDVFNVLLQVLDDGRLTDGQGRTVDFRNTVIILTSNIGSPLIFEGIQSGQSYETIRERVFGVLQQHFRPEFLNRLDEIVVFRPLAREQIAAIVQIQLEAVRKRLAERRITLELS 787          
BLAST of FC920862 vs. ExPASy Swiss-Prot
Match: CLPB_STRCO (Chaperone protein clpB OS=Streptomyces coelicolor GN=clpB PE=3 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 8.148e-42
Identity = 86/138 (62.32%), Postives = 108/138 (78.26%), Query Frame = 2
Query:    2 QLTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLRKVARLQMKDVXIRLAERGVALAVTD 415
            QLTEAVRRRPY+VVL DEVEKAH  VF+ LLQVLDDGRLTDGQGRTVDFRNT++++TSNLG+++L+    G+      + QVL+ VR  F+PE LNRLD++VVF  LS E+L ++ARLQ+  +  RLAER + L VTD
Sbjct:  665 QLTEAVRRRPYTVVLLDEVEKAHPEVFDILLQVLDDGRLTDGQGRTVDFRNTILVLTSNLGSQYLVDPTTGEAE---KKQQVLEVVRSSFKPEFLNRLDDLVVFSALSQEELSRIARLQINGLARRLAERRLTLEVTD 799          
BLAST of FC920862 vs. ExPASy Swiss-Prot
Match: CLPB1_SYNY3 (Chaperone protein clpB 1 OS=Synechocystis sp. (strain PCC 6803) GN=clpB1 PE=3 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 1.064e-41
Identity = 80/139 (57.55%), Postives = 107/139 (76.98%), Query Frame = 2
Query:    2 QLTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLRKVARLQMKDVXIRLAERGVALAVTDA 418
            QL+EAVRRRPYSVVL DEVEKAH+ VFN LLQVLDDGR+TD QGR VDFRNT+I+MTSN+G++H+LS           + QVLQ +RKHFRPE LNR+D++++F  L  ++LR++  LQ+K +   L E+ + L+++DA
Sbjct:  676 QLSEAVRRRPYSVVLLDEVEKAHLDVFNILLQVLDDGRITDSQGRVVDFRNTIIVMTSNIGSDHILSLSADDADYDKMQKQVLQSLRKHFRPEFLNRIDDLIIFHTLKRDELRRIVVLQIKRIEKLLDEQKITLSLSDA 814          
BLAST of FC920862 vs. ExPASy Swiss-Prot
Match: CLPB_NEIMB (Chaperone protein clpB OS=Neisseria meningitidis serogroup B GN=clpB PE=3 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 2.371e-41
Identity = 79/138 (57.25%), Postives = 110/138 (79.71%), Query Frame = 2
Query:    5 LTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLRKVARLQMKDVXIRLAERGVALAVTDA 418
            LTE VRR+PYSV+L DEVEKAH  VFN LLQVLDDGRLTDGQGRTVDF+NTVI+MTSN+G++H+    MG    +  ++ V+++V++HFRPE++NR+DE+VVF  L  + +R +A++Q+K +  RL ++ + LAV+DA
Sbjct:  666 LTEQVRRKPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFKNTVIVMTSNIGSQHI--QQMGIQDYEAVKEVVMEDVKEHFRPEMINRIDEVVVFHGLDQDNIRNIAKIQLKGLEKRLEKQNLRLAVSDA 801          
BLAST of FC920862 vs. ExPASy Swiss-Prot
Match: CLPB_HAEDU (Chaperone protein clpB OS=Haemophilus ducreyi GN=clpB PE=3 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 4.044e-41
Identity = 85/137 (62.04%), Postives = 105/137 (76.64%), Query Frame = 2
Query:    5 LTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLRKVARLQMKDVXIRLAERGVALAVTD 415
            LTEAVRRRPYSVVL DEVEKAH  VFN LLQVLDDGRLTDGQGRTVDFRNTV+IMTSNLGA HL+     ++T    ++ V+  V +HFRPE +NR+DE VVF PL  + +R +A +Q++ +  RLAERG  + ++D
Sbjct:  662 LTEAVRRRPYSVVLLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNLGA-HLIQ-ENAEITYLAMKEMVMSVVSQHFRPEFINRIDETVVFHPLDQQHIRAIANIQLQRLIRRLAERGYQVTISD 796          
The following BLAST results are available for this feature:
BLAST of FC920862 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 200
Match NameE-valueIdentityDescription
HS101_ORYSJ6.195e-6689.21Heat shock protein 101 OS=Oryza sativa subsp. japo... [more]
HS101_ARATH8.091e-6689.21Heat shock protein 101 OS=Arabidopsis thaliana GN=... [more]
CLPB2_STRAW2.291e-4462.86Chaperone protein clpB 2 OS=Streptomyces avermitil... [more]
CLPB_THET81.939e-4361.15Chaperone protein clpB OS=Thermus thermophilus (st... [more]
CLPB_THET21.939e-4361.15Chaperone protein clpB OS=Thermus thermophilus (st... [more]
CLPB_MEIRU7.369e-4361.31Chaperone protein clpB OS=Meiothermus ruber GN=clp... [more]
CLPB_STRCO8.148e-4262.32Chaperone protein clpB OS=Streptomyces coelicolor ... [more]
CLPB1_SYNY31.064e-4157.55Chaperone protein clpB 1 OS=Synechocystis sp. (str... [more]
CLPB_NEIMB2.371e-4157.25Chaperone protein clpB OS=Neisseria meningitidis s... [more]
CLPB_HAEDU4.044e-4162.04Chaperone protein clpB OS=Haemophilus ducreyi GN=c... [more]

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Properties
Property NameValue
Genbank descriptionC32013H11EF RVDevelop1 Citrus clementina cDNA clone C32013H11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920862 ID=FC920862; Name=FC920862; organism=Citrus clementina; type=EST; length=419bp
ACAACTTACTGAGGCTGTGAGGAGAAGGCCTTATAGTGTTGTGTTGTTTG
ATGAAGTGGAAAAAGCTCACATTTCTGTGTTTAATACTCTACTTCAAGTT
TTGGATGATGGAAGATTAACTGATGGCCAAGGCCGTACAGTTGACTTTAG
AAACACAGTTATTATCATGACCTCAAACCTTGGAGCAGAGCACCTCTTAT
CGGGAATGATGGGCAAGGTCACAATGCAAGTTGCACGTGATCAAGTCCTG
CAAGAGGTGAGGAAGCACTTTAGGCCAGAGCTGTTGAACCGTCTTGATGA
GATTGTTGTGTTTGATCCTCTCTCACACGAACAACTAAGGAAGGTGGCAA
GGCTGCAAATGAAGGATGTTGNCATTCGTCTTGCTGAGAGGGGTGTAGCA
TTGGCAGTAACTGATGCTG
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