FC920863

Overview
NameFC920863
Unique NameFC920863
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length704
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC920863_ssr306 microsatellite FC920863_ssr306:306..320. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig14207 contig Ccv1_Contig14207:1..704. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920863 vs. ExPASy Swiss-Prot
Match: CAX3_ARATH (Vacuolar cation/proton exchanger 3 OS=Arabidopsis thaliana GN=CAX3 PE=1 SV=1)

HSP 1 Score: 258.84 bits (660), Expect = 1.994e-68
Identity = 143/235 (60.85%), Postives = 159/235 (67.66%), Query Frame = 1
Query:    1 FALSLPGLTPLAERVSFLTEQIAFYTGPTVGGLLNATCGNATELIIAIFALYERKIDVVKYXXXXXXXXXXXXXXXXXXFCGGIANLRKEQKYDRKQADVNSXXXXXXXXXXXXXXXFKYAA---ASSDITAKATLQLSRASSIVMLIGYIAYLVFQLWTHREFF---XXXXXXXXXXXXXXXTPVIGFWSGFAWLVGMTAIIALLSEFVVGTIEDAXNSWGISVSFISIILLPL 687
            F LSL GLTPLAERVSFLTEQ+AFYTGPTVGGLLNATCGNATELIIAI AL   K+ VVKY                  F GGIAN+R+EQ++DRKQADVN                 KYAA    S+ +  K +L LSR SSIVMLI YIAYL+FQLWTHR+ F                  TPVIGFWSGFAWLVGMT +IALLSE+VV TIEDA +SWG+SVSFISIILLP+
Sbjct:   99 FGLSLIGLTPLAERVSFLTEQLAFYTGPTVGGLLNATCGNATELIIAILALANNKVAVVKYSLLGSILSNLLLVLGTSLFFGGIANIRREQRFDRKQADVNFFLLLMGLLCHLLPLLLKYAATGEVSTSMINKMSLTLSRTSSIVMLIAYIAYLIFQLWTHRQLFEAQQDDDDAYDDEVSVEETPVIGFWSGFAWLVGMTIVIALLSEYVVDTIEDASDSWGLSVSFISIILLPI 333          
BLAST of FC920863 vs. ExPASy Swiss-Prot
Match: CAX1_ARATH (Vacuolar cation/proton exchanger 1 OS=Arabidopsis thaliana GN=CAX1 PE=1 SV=3)

HSP 1 Score: 243.047 bits (619), Expect = 1.133e-63
Identity = 134/233 (57.51%), Postives = 152/233 (65.24%), Query Frame = 1
Query:    1 FALSLPGLTPLAERVSFLTEQIAFYTGPTVGGLLNATCGNATELIIAIFALYERKIDVVKYXXXXXXXXXXXXXXXXXXFCGGIANLRKEQKYDRKQADVNSXXXXXXXXXXXXXXXFKY---AAASSDITAKATLQLSRASSIVMLIGYIAYLVFQLWTHREFF-XXXXXXXXXXXXXXXTPVIGFWSGFAWLVGMTAIIALLSEFVVGTIEDAXNSWGISVSFISIILLPL 687
            F LSL GLTPLAERVSFLTEQ+AFYTGPT+GGLLNATCGNATELIIAI AL   K+ VVKY                  FCGGIAN+R+EQ++DRKQADVN                  Y     AS+ + +   L +SR  SIVMLI YIAYLVFQLWTHR+ F                T VI FWSGFAWLVGMT +IALLSE+VV TIE+A + W +SVSFISIILLP+
Sbjct:   99 FGLSLLGLTPLAERVSFLTEQLAFYTGPTLGGLLNATCGNATELIIAILALTNNKVAVVKYSLLGSILSNLLLVLGTSLFCGGIANIRREQRFDRKQADVNFFLLLLGFLCHLLPLLVGYLKNGEASAAVLSDMQLSISRGFSIVMLISYIAYLVFQLWTHRQLFDAQEQEDEYDDDVEQETAVISFWSGFAWLVGMTLVIALLSEYVVATIEEASDKWNLSVSFISIILLPI 331          
BLAST of FC920863 vs. ExPASy Swiss-Prot
Match: CAX1A_ORYSJ (Vacuolar cation/proton exchanger 1a OS=Oryza sativa subsp. japonica GN=CAX1a PE=1 SV=1)

HSP 1 Score: 219.55 bits (558), Expect = 1.341e-56
Identity = 124/234 (52.99%), Postives = 144/234 (61.54%), Query Frame = 1
Query:    1 FALSLPGLTPLAERVSFLTEQIAFYTGPTVGGLLNATCGNATELIIAIFALYERKIDVVKYXXXXXXXXXXXXXXXXXXFCGGIANLRKEQKYDRKQADVNSXXXXXXXXXXXXXXXFKYAAAS-----SDITAKATLQLSRASSIVMLIGYIAYLVFQLWTHREFFXXXXXXXXXXXXXXXTPVIGFWSGFAWLVGMTAIIALLSEFVVGTIEDAXNSWGISVSFISIILLPL 687
            FALSL GL PLAERVSFLTEQIA YTGPTVGGLLNATCGNATELIIA+FAL + KI+VVK                   FCGG+ NL   Q YDR Q+DV++                +YA A+     S  +A A+L LSRA S VML  Y+AYL FQL THR+ F                P +GF S   WL  MTA+I++LSE+VVGTIE    SWG+SVSFISIILLP+
Sbjct:   90 FALSLLGLIPLAERVSFLTEQIALYTGPTVGGLLNATCGNATELIIALFALLKGKIEVVKCSLLGSVLSNLLLVLGTSLFCGGVVNLGARQPYDRNQSDVSTALLFLAVLCHSAPLLLRYAVAAGEHSVSATSAAASLDLSRACSFVMLASYVAYLFFQLKTHRQLFEPQEVDGGDAGDDDEEPALGFASALFWLALMTAVISVLSEYVVGTIEPTSQSWGLSVSFISIILLPI 323          
BLAST of FC920863 vs. ExPASy Swiss-Prot
Match: CAX1B_ORYSJ (Vacuolar cation/proton exchanger 1b OS=Oryza sativa subsp. japonica GN=CAX1b PE=2 SV=1)

HSP 1 Score: 200.675 bits (509), Expect = 6.446e-51
Identity = 121/236 (51.27%), Postives = 137/236 (58.05%), Query Frame = 1
Query:    1 FALSLPGLTPLAERVSFLTEQIAFYTGPTVGGLLNATCGNATELIIAIFALYERKIDVVKYXXXXXXXXXXXXXXXXXXFCGGIANLRKEQKYDRKQADVNSXXXXXXXXXXXXXXXFKYAAASSD---ITAKATLQLSRASSIVMLIGYIAYLVFQLWTHREFFXXXXXXXXXXXXXXXT----PVIGFWSGFAWLVGMTAIIALLSEFVVGTIEDAXNSWGISVSFISIILLPL 687
            F LSL GL PLAER+SFLTEQIAFYTGPTVGGLLNAT GN TE+IIA+ AL E KI+VVK                   F  GIANLR  Q YD KQA VN+                +YA  S D   ++  A L LSRA SI+MLI Y+AYL FQL THR+ F                    PV+GF S   WL  MT + ALLS +VV TIE A  SW +SVSFISIILLP+
Sbjct:   98 FVLSLIGLVPLAERLSFLTEQIAFYTGPTVGGLLNATFGNVTEVIIALLALREGKIEVVKCSLLGSILSNLLLVLGTSLFLAGIANLRAHQPYDTKQAHVNTALLMLAVLCHSLPLMLRYAVTSGDHAIVSGDAALHLSRACSILMLIAYLAYLFFQLNTHRQLFEPQQVEDDDDDDLVIAQDDEPVLGFSSAMIWLALMTLLTALLSGYVVSTIEAASESWELSVSFISIILLPI 333          
BLAST of FC920863 vs. ExPASy Swiss-Prot
Match: CAX4_ARATH (Vacuolar cation/proton exchanger 4 OS=Arabidopsis thaliana GN=CAX4 PE=1 SV=2)

HSP 1 Score: 194.126 bits (492), Expect = 6.033e-49
Identity = 109/240 (45.42%), Postives = 141/240 (58.75%), Query Frame = 1
Query:    1 FALSLPGLTPLAERVSFLTEQIAFYTGPTVGGLLNATCGNATELIIAIFALYERKIDVVKYXXXXXXXXXXXXXXXXXXFCGGIANLRKEQKYDRKQADVNSXXXXXXXXXXXXXXXFKYAAASSDITAKATLQLSRASSIVMLIGYIAYLVFQLWT-----------HREFFXXXXXXXXXXXXXXXTPVIGFWSGFAWLVGMTAIIALLSEFVVGTIEDAXNSWGISVSFISIILLPL 687
            FALSL GLTPLAER+SFLTEQIAF+TGPTVGGL+NATCGNATE+IIAI A+ +RK+ +VK                   F GGI+NLRK Q +D +Q D+NS                ++   + +      + LSRASS VMLI Y+A+L+F L++            RE                   VIG WS   WL+ MT ++ALLS+++V TI+DA +SWG+SV FI IILLP+
Sbjct:  100 FALSLLGLTPLAERISFLTEQIAFHTGPTVGGLMNATCGNATEMIIAILAVGQRKMRIVKLSLLGSILSNLLFVLGTSLFLGGISNLRKHQSFDPRQGDMNSMLLYLALLCQTLPMIMRFTMEAEEYDGSDVVVLSRASSFVMLIAYLAFLIFHLFSSHLSPPPPPLPQRE----DVHDDDVSDKEEEGAVIGMWSAIFWLIIMTLLVALLSDYLVSTIQDAADSWGLSVGFIGIILLPI 335          
BLAST of FC920863 vs. ExPASy Swiss-Prot
Match: CAX1C_ORYSJ (Vacuolar cation/proton exchanger 1c OS=Oryza sativa subsp. japonica GN=CAX1c PE=2 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 4.474e-44
Identity = 102/233 (43.78%), Postives = 134/233 (57.51%), Query Frame = 1
Query:    1 FALSLPGLTPLAERVSFLTEQIAFYTGPTVGGLLNATCGNATELIIAIFALYERKIDVVKYXXXXXXXXXXXXXXXXXXFCGGIANLRKEQKYDRKQADVNSXXXXXXXXXXXXXXXFKYAAASSD-ITAKATLQLSRASSIVMLIGYIAYLVFQLWTHREFFXXXXXXXXXXXXXXXT---PVIGFWSGFAWLVGMTAIIALLSEFVVGTIEDAXNSWGISVSFISIILLPL 687
            FA SL GL PLAERVSFL+E IA   GPT GG++NATCGN  ELIIA+FAL++ K++++K+                    GGI N+ KE+  D++QADV+                 KY +++ D I + + +QLSR+ +IVMLI Y   L+FQL THR+ F                    VIGF S   WL+GM  + A+LS +VV TIE+A  S GI V FISIILLP+
Sbjct:  105 FAFSLIGLAPLAERVSFLSEHIANTVGPTAGGIMNATCGNVPELIIALFALHKNKMEILKWSLLGSILSNLLLVLGSSLLFGGIVNIGKERPLDKRQADVSIGLLLLGVLCHIATLVSKYTSSTGDSINSSSVMQLSRSCAIVMLIAYFGSLMFQLKTHRQIFELEEDSSDSSSSEDDATDKSVIGFASAMVWLIGMAVVTAMLSSYVVTTIEEASESMGIPVRFISIILLPI 337          
BLAST of FC920863 vs. ExPASy Swiss-Prot
Match: CAX5_ARATH (Vacuolar cation/proton exchanger 5 OS=Arabidopsis thaliana GN=CAX5 PE=2 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 3.797e-35
Identity = 96/233 (41.20%), Postives = 121/233 (51.93%), Query Frame = 1
Query:    1 FALSLPGLTPLAERVSFLTEQIAFYTGPTVGGLLNATCGNATELIIAIFALYERKIDVVKYXXXXXXXXXXXXXXXXXXFCGGIANLRKEQKYDRKQADVNSXXXXXXXXXXXXXXXFKYAAASSDITA-KATLQLSRASSIVMLIGYIAYLVFQLWTHREFF---XXXXXXXXXXXXXXXTPVIGFWSGFAWLVGMTAIIALLSEFVVGTIEDAXNSWGISVSFISIILLPL 687
            F LSL G+TPLAER+ + TEQ+A YTG TVGGLLNAT GN TELII+IFAL    I VV+                   FCGG+   +KEQ +D+  A VNS                 Y    S++ A  + L LSR SS +ML+ Y AYL FQL +    +                   P I  W    WL  +TA ++LLS ++V  IE A  SW I +SFIS+ILLP+
Sbjct:  101 FLLSLVGITPLAERLGYATEQLACYTGSTVGGLLNATFGNVTELIISIFALKSGMIRVVQLTLLGSILSNMLLVLGCAFFCGGLVFSQKEQVFDKGNAVVNSGLLLMAVMGLLFPAVLHY--THSEVHAGSSELALSRFSSCIMLVAYAAYLFFQLKSQPSSYTPLTEETNQNEETSDDDEDPEISKWEAIIWLSILTAWVSLLSGYLVDAIEGASVSWKIPISFISVILLPI 331          
BLAST of FC920863 vs. ExPASy Swiss-Prot
Match: CAX2_ARATH (Vacuolar cation/proton exchanger 2 OS=Arabidopsis thaliana GN=CAX2 PE=1 SV=2)

HSP 1 Score: 147.902 bits (372), Expect = 4.958e-35
Identity = 95/233 (40.77%), Postives = 121/233 (51.93%), Query Frame = 1
Query:    1 FALSLPGLTPLAERVSFLTEQIAFYTGPTVGGLLNATCGNATELIIAIFALYERKIDVVKYXXXXXXXXXXXXXXXXXXFCGGIANLRKEQKYDRKQADVNSXXXXXXXXXXXXXXXFKYAAASSDITA-KATLQLSRASSIVMLIGYIAYLVFQLWTHREFF---XXXXXXXXXXXXXXXTPVIGFWSGFAWLVGMTAIIALLSEFVVGTIEDAXNSWGISVSFISIILLPL 687
            F L+L G+TPLAER+ + TEQ+A YTGPTVGGLLNAT GN TELII+IFAL    I VV+                   FCGG+   +K+Q +D+  A VNS                 Y    S++ A  + L LSR SS +MLI Y AYL FQL +    +                   P I  W    WL  +TA ++LLS ++V  IE A  SW I ++FIS ILLP+
Sbjct:  101 FLLTLVGITPLAERLGYATEQLACYTGPTVGGLLNATFGNVTELIISIFALKNGMIRVVQLTLLGSILSNMLLVLGCAFFCGGLVFYQKDQVFDKGIATVNSGLLLMAVMGILFPAVLHY--THSEVHAGSSELALSRFSSCIMLIAYAAYLFFQLKSQSNSYSPLDEESNQNEETSAEDEDPEISKWEAIIWLSILTAWVSLLSGYLVDAIEGASVSWNIPIAFISTILLPI 331          
BLAST of FC920863 vs. ExPASy Swiss-Prot
Match: CAX6_ARATH (Putative vacuolar cation/proton exchanger 6 OS=Arabidopsis thaliana GN=CAX6 PE=3 SV=3)

HSP 1 Score: 143.28 bits (360), Expect = 1.221e-33
Identity = 90/230 (39.13%), Postives = 117/230 (50.87%), Query Frame = 1
Query:    1 FALSLPGLTPLAERVSFLTEQIAFYTGPTVGGLLNATCGNATELIIAIFALYERKIDVVKYXXXXXXXXXXXXXXXXXXFCGGIANLRKEQKYDRKQADVNSXXXXXXXXXXXXXXXFKYAAASSDITA-KATLQLSRASSIVMLIGYIAYLVFQLWTHREFFXXXXXXXXXXXXXXXTPVIGFWSGFAWLVGMTAIIALLSEFVVGTIEDAXNSWGISVSFISIILLPL 687
            F LSL G+TPLAER+ + TEQ++ YTG TVGGLLNAT GN  ELII+I AL    I VV+                   FCGG+    K+Q +D++ A V+S                 Y    S++ A  + L LSR  S +ML+ Y AYL FQL +   F+                P I  W    WL   TA ++LLS ++V  IE    SW I +SFIS+ILLP+
Sbjct:  112 FLLSLVGITPLAERLGYATEQLSCYTGATVGGLLNATFGNVIELIISIIALKNGMIRVVQLTLLGSILSNILLVLGCAFFCGGLVFPGKDQVFDKRNAVVSSGMLLMAVMGLLFPTFLHY--THSEVHAGSSELALSRFISCIMLVAYAAYLFFQLKSQPSFYTEKTNQNEETSNDDEDPEISKWEAIIWLSIFTAWVSLLSGYLVDAIEGTSVSWKIPISFISVILLPI 339          
BLAST of FC920863 vs. ExPASy Swiss-Prot
Match: CAX3_ORYSJ (Vacuolar cation/proton exchanger 3 OS=Oryza sativa subsp. japonica GN=CAX3 PE=2 SV=2)

HSP 1 Score: 140.584 bits (353), Expect = 7.916e-33
Identity = 88/233 (37.77%), Postives = 120/233 (51.50%), Query Frame = 1
Query:    1 FALSLPGLTPLAERVSFLTEQIAFYTGPTVGGLLNATCGNATELIIAIFALYERKIDVVKYXXXXXXXXXXXXXXXXXXFCGGIANLRKEQKYDRKQADVNSXXXXXXXXXXXXXXXFKYAAASSDITAKAT-LQLSRASSIVMLIGYIAYLVFQLWTHREFF---XXXXXXXXXXXXXXXTPVIGFWSGFAWLVGMTAIIALLSEFVVGTIEDAXNSWGISVSFISIILLPL 687
            F  S+ G+TPLAER+ + TEQ+A YTGPTVGGLLNAT GNATE+IIAI+AL    I VV+                   F GGI +  K+Q + +  A VNS                 +    S++   A+ + LSR SS +ML+ Y +YL FQL      +                     IG W   AWL  +T  +++LSE++V  IE A +S  + V+FIS+ILLP+
Sbjct:   77 FLFSMLGITPLAERLGYATEQLAIYTGPTVGGLLNATFGNATEMIIAIYALKNGMIRVVQQSLLGSILSNMLLVMGCAFFAGGIVHRNKDQVFSKATAVVNSGLLLMAVMGLMFPAVLHF--THSEVRQGASEVSLSRFSSCIMLVAYASYLYFQLSGRNNAYSPIGSEEMPNEDAAEEDEESEIGMWESIAWLAMLTLWVSILSEYLVNAIEGASDSLNLPVAFISVILLPI 307          
The following BLAST results are available for this feature:
BLAST of FC920863 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
CAX3_ARATH1.994e-6860.85Vacuolar cation/proton exchanger 3 OS=Arabidopsis ... [more]
CAX1_ARATH1.133e-6357.51Vacuolar cation/proton exchanger 1 OS=Arabidopsis ... [more]
CAX1A_ORYSJ1.341e-5652.99Vacuolar cation/proton exchanger 1a OS=Oryza sativ... [more]
CAX1B_ORYSJ6.446e-5151.27Vacuolar cation/proton exchanger 1b OS=Oryza sativ... [more]
CAX4_ARATH6.033e-4945.42Vacuolar cation/proton exchanger 4 OS=Arabidopsis ... [more]
CAX1C_ORYSJ4.474e-4443.78Vacuolar cation/proton exchanger 1c OS=Oryza sativ... [more]
CAX5_ARATH3.797e-3541.20Vacuolar cation/proton exchanger 5 OS=Arabidopsis ... [more]
CAX2_ARATH4.958e-3540.77Vacuolar cation/proton exchanger 2 OS=Arabidopsis ... [more]
CAX6_ARATH1.221e-3339.13Putative vacuolar cation/proton exchanger 6 OS=Ara... [more]
CAX3_ORYSJ7.916e-3337.77Vacuolar cation/proton exchanger 3 OS=Oryza sativa... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC32013H12EF RVDevelop1 Citrus clementina cDNA clone C32013H12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920863 ID=FC920863; Name=FC920863; organism=Citrus clementina; type=EST; length=704bp
TTCGCTCTGAGCTTACCAGGACTGACTCCTCTGGCTGAACGTGTCAGCTT
CTTGACAGAGCAAATTGCTTTCTACACTGGCCCAACAGTGGGGGGATTAT
TGAACGCGACATGCGGCAATGCCACGGAGCTCATCATAGCAATTTTTGCC
CTATACGAACGTAAAATTGACGTGGTCAAATATTCTCTTTTGGGTTCCAT
TCTCTCAAACCTTCTTCTGGTTCTTGGCACTTCGCTCTTCTGTGGAGGGA
TTGCCAATCTCAGAAAGGAACAAAAATACGATAGAAAACAAGCCGATGTC
AACTCGCTGCTGCTGCTGCTGGCATTGCTGTGCCACATGTTACCATTGCT
ATTCAAATACGCTGCGGCCTCCTCTGATATTACTGCCAAGGCGACCCTTC
AGCTATCAAGAGCCAGCAGCATTGTAATGCTGATTGGTTACATCGCCTAT
CTCGTCTTCCAATTGTGGACACACCGGGAATTTTTTGAAGCTCAAGAGGA
TTCAGAGGACGACGATGATGTGACTGAAGAAACGCCTGTGATTGGGTTTT
GGAGTGGATTTGCTTGGCTTGTTGGGATGACTGCTATCATTGCTTTACTA
TCAGAATTTGTAGTGGGCACAATTGAGGATGCTTNCAATTCTTGGGGGAT
TTCTGTGAGCTTTATCAGCATTATCTTGCTACCATTGNTGGAATGCAGCT
GACA
back to top