FC920871

Overview
NameFC920871
Unique NameFC920871
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length615
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9401 contig Ccv1_Contig9401:44..656. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920871 vs. ExPASy Swiss-Prot
Match: AOC3_ARATH (Allene oxide cyclase 3, chloroplastic OS=Arabidopsis thaliana GN=AOC3 PE=2 SV=1)

HSP 1 Score: 217.238 bits (552), Expect = 5.081e-56
Identity = 118/196 (60.20%), Postives = 140/196 (71.43%), Query Frame = 2
Query:   38 ASASSLKPIXXXXXXXXXXXXXXETQRLLGFKSSFSSHHRNLSLSTTHQDVSRRS----SKNNVTTKAFFFNKPSSQPDSSRPANNKVQELFVYEINERDRNSPAILKLSQKPEHLTIGDLVPFTNKLYTGDLQKRIGITAGLCVLIKHEPEKKGDRFEAIYSFYFGDYGHISVQGAYLTYEDTYLAVTGGSGIFE 613
            ++A SL+ I                  LLGF  SF    +NL +S+   D S RS    SKN   T+AFF+N    + ++SRP+  K+QEL VYE+NE DRNSPA+LKL +KP  L +GDLVPFTNKLYTGDL+KR+GITAGLCVLI+H PEK GDRFEA YSFYFGDYGH+SVQG YLTYEDT+LAVTGGSGIFE
Sbjct:    5 SAAMSLESISMTTLNNLSRNHQSHRSSLLGFSRSF----QNLGISSNGPDFSSRSRSTTSKNLNVTRAFFWNW-GKKTENSRPS--KIQELNVYELNEGDRNSPAVLKLGKKPTELCLGDLVPFTNKLYTGDLKKRVGITAGLCVLIQHVPEKSGDRFEASYSFYFGDYGHLSVQGQYLTYEDTFLAVTGGSGIFE 193          
BLAST of FC920871 vs. ExPASy Swiss-Prot
Match: AOC4_ARATH (Allene oxide cyclase 4, chloroplastic OS=Arabidopsis thaliana GN=AOC4 PE=2 SV=1)

HSP 1 Score: 207.994 bits (528), Expect = 3.083e-53
Identity = 109/165 (66.06%), Postives = 123/165 (74.55%), Query Frame = 2
Query:  122 LGFKSSFSSHHRNLSLSTTHQDVSRRSSKNNVTTKAFFFNK-PSSQPDSSRPANNKVQELFVYEINERDRNSPAILKLSQKPEHLTIGDLVPFTNKLYTGDLQKRIGITAGLCVLIKHEPEKKGDRFEAIYSFYFGDYGHISVQGAYLTYEDTYLAVTGGSGIFE 613
            LGF  SF     N  +S+    +S R+     +T  FF     SS  D SRP   K+QEL VYE NE DRNSPA+LKL +KP+ L +GDLVPFTNKLYTGDL KRIGITAGLCVLI+H PEKKGDRFEA YSFYFGDYGHISVQG YLTYEDT+LA+TGGSG+FE
Sbjct:   31 LGFSRSF----HNQRISSNSPGLSTRARSTTSSTGGFFRTICSSSSNDYSRPT--KIQELNVYEFNEGDRNSPAVLKLGKKPDQLCLGDLVPFTNKLYTGDLTKRIGITAGLCVLIQHVPEKKGDRFEASYSFYFGDYGHISVQGPYLTYEDTFLAITGGSGVFE 189          
BLAST of FC920871 vs. ExPASy Swiss-Prot
Match: AOC2_ARATH (Allene oxide cyclase 2, chloroplastic OS=Arabidopsis thaliana GN=AOC2 PE=1 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 1.062e-45
Identity = 105/195 (53.85%), Postives = 126/195 (64.62%), Query Frame = 2
Query:   38 ASASSLKPIXXXXXXXXXXXXXXETQRLLGFKSSFSSHHRNLSLSTTHQDVSRRSS---KNNVTTKAFFFNKPSSQPDSSRPANNKVQELFVYEINERDRNSPAILKLSQKPEHLTIGDLVPFTNKLYTGDLQKRIGITAGLCVLIKHEPEKKGDRFEAIYSFYFGDYGHISVQGAYLTYEDTYLAVTGGSGIFE 613
            +SA SL+ I                  LLG   SF    +NL +S+   D S  SS   K N+T         S   +   P  +KVQEL VYEINE DR+SP ILK +       +GDLVPFTNKLYTGDL+KR+GITAGLCV+I+H PEKKG+RFEA YSFYFGDYGH+SVQG YLTYED++LA+TGG+GIFE
Sbjct:    3 SSAVSLQSISMTTLNNLSCNQQFHRSSLLGSSKSF----QNLGISSNGSDFSYPSSFTAKKNLTASRAL----SQNGNIENPRPSKVQELSVYEINELDRHSPKILK-NAFSLMFGLGDLVPFTNKLYTGDLKKRVGITAGLCVVIEHVPEKKGERFEATYSFYFGDYGHLSVQGPYLTYEDSFLAITGGAGIFE 188          
BLAST of FC920871 vs. ExPASy Swiss-Prot
Match: AOC1_ARATH (Allene oxide cyclase 1, chloroplastic OS=Arabidopsis thaliana GN=AOC1 PE=1 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 3.416e-44
Identity = 94/165 (56.97%), Postives = 116/165 (70.30%), Query Frame = 2
Query:  119 LLGFKSSFSSHHRNLSLSTTHQDVSRRSSKNNVTTKAFFFNKPSSQPDSSRPANNKVQELFVYEINERDRNSPAILKLSQKPEHLTIGDLVPFTNKLYTGDLQKRIGITAGLCVLIKHEPEKKGDRFEAIYSFYFGDYGHISVQGAYLTYEDTYLAVTGGSGIFE 613
            LLGF  SF +   + +   +    S    K    T+A   N  +++     P  +KVQEL VYEIN+ DR+SP ILK +       +GDLVPFTNKLYTGDL+KR+GITAGLCV+I+H PEK GDRFEA YSFYFGDYGH+SVQG YLTYED++LA+TGG+GIFE
Sbjct:   30 LLGFSKSFQNFGISSNGPGSSSPTSFTPKKKLTPTRALSQNLGNTE----NPRPSKVQELSVYEINDLDRHSPKILK-NAFSFRFGLGDLVPFTNKLYTGDLKKRVGITAGLCVVIEHVPEKNGDRFEATYSFYFGDYGHLSVQGPYLTYEDSFLAITGGAGIFE 189          
The following BLAST results are available for this feature:
BLAST of FC920871 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
AOC3_ARATH5.081e-5660.20Allene oxide cyclase 3, chloroplastic OS=Arabidops... [more]
AOC4_ARATH3.083e-5366.06Allene oxide cyclase 4, chloroplastic OS=Arabidops... [more]
AOC2_ARATH1.062e-4553.85Allene oxide cyclase 2, chloroplastic OS=Arabidops... [more]
AOC1_ARATH3.416e-4456.97Allene oxide cyclase 1, chloroplastic OS=Arabidops... [more]
back to top
Properties
Property NameValue
Genbank descriptionC32014B03EF RVDevelop1 Citrus clementina cDNA clone C32014B03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920871 ID=FC920871; Name=FC920871; organism=Citrus clementina; type=EST; length=615bp
ACTTTACTCATTCAATATTTTCTGCAAATCAATAATGGCCTCTGCAAGCT
CTCTCAAGCCCATCTCTTATTCTCTGAACCTCCCTAACTCGAGATCCTCT
TCTTCCGAAACCCAAAGGTTGCTAGGTTTCAAATCATCTTTTTCCTCTCA
TCATCGAAACCTCAGTCTCTCAACAACCCACCAAGATGTCTCAAGAAGAA
GCTCCAAGAACAACGTCACCACCAAAGCTTTCTTCTTCAACAAACCCAGC
AGCCAACCAGATTCTTCCAGGCCTGCTAATAATAAGGTTCAAGAACTGTT
CGTGTATGAGATCAACGAGCGGGACAGAAACAGCCCGGCAATTCTGAAGC
TAAGCCAAAAGCCTGAACATCTCACAATCGGCGACCTTGTGCCCTTCACG
AACAAGCTCTACACCGGCGACTTACAGAAGCGCATTGGCATCACGGCGGG
GCTCTGCGTGTTGATCAAGCACGAACCGGAGAAGAAGGGTGACCGGTTTG
AAGCGATTTACAGCTTCTACTTCGGTGACTACGGTCACATATCCGTGCAG
GGAGCTTATTTGACTTACGAAGACACGTACTTGGCCGTCACCGGTGGCTC
CGGGATCTTTGAGGG
back to top