FC920873

Overview
NameFC920873
Unique NameFC920873
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length703
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig853 contig Ccv1_Contig853:56..759. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC920873 vs. ExPASy Swiss-Prot
Match: RS92_ARATH (40S ribosomal protein S9-2 OS=Arabidopsis thaliana GN=RPS9C PE=2 SV=1)

HSP 1 Score: 336.65 bits (862), Expect = 7.527e-92
Identity = 164/178 (92.13%), Postives = 175/178 (98.31%), Query Frame = 1 
Query:   40 MVHVSFYRNYGKTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGGRPGRVKRRN 573
            MV+V FYRNYGKTFKKPRRPYEKERLDAEL+LVGEYGLRCKRELWRVQY LSRIRNAAR+LLTLDEKNPRRIFEGEALLRRM+RYG L+E+QNKLDYVLALTVENFLERRLQT+VFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSF+VRV+SQKH++FSLTSPFGGGRPGRVKRRN
Sbjct:    1 MVNVRFYRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYTLSRIRNAARELLTLDEKNPRRIFEGEALLRRMNRYGLLDETQNKLDYVLALTVENFLERRLQTIVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFMVRVESQKHVDFSLTSPFGGGRPGRVKRRN 178
[Close]
BLAST of FC920873 vs. ExPASy Swiss-Prot
Match: RS91_ARATH (40S ribosomal protein S9-1 OS=Arabidopsis thaliana GN=RPS9B PE=1 SV=1)

HSP 1 Score: 328.176 bits (840), Expect = 2.677e-89
Identity = 160/178 (89.89%), Postives = 174/178 (97.75%), Query Frame = 1 
Query:   40 MVHVSFYRNYGKTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGGRPGRVKRRN 573
            MVHV +YRNYGKTFK PRRPYEKERLD+EL+LVGEYGLR KRELWRVQY+LSRIRNAARDLLTLDEK+PRRIFEGEALLRRM+RYG L+ESQNKLDYVLALTVENFLERRLQT+VFKSGMAKSIHH+RVLIRQRHIRVG+QLVNIPSF+VR+DSQKHI+F+LTSPFGGGRPGRVKRRN
Sbjct:    1 MVHVCYYRNYGKTFKGPRRPYEKERLDSELKLVGEYGLRNKRELWRVQYSLSRIRNAARDLLTLDEKSPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTIVFKSGMAKSIHHSRVLIRQRHIRVGKQLVNIPSFMVRLDSQKHIDFALTSPFGGGRPGRVKRRN 178
[Close]
BLAST of FC920873 vs. ExPASy Swiss-Prot
Match: RS9_PODAN (40S ribosomal protein S9 OS=Podospora anserina GN=RPS9 PE=3 SV=1)

HSP 1 Score: 262.307 bits (669), Expect = 1.804e-69
Identity = 127/170 (74.71%), Postives = 152/170 (89.41%), Query Frame = 1 
Query:   61 RNYGKTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGGRPGRVKRR 570
            R+Y KT K PRRP+E  RLD+EL+LVGEYGLR KRE+WRV   LS+IR AAR+LLTLDEK+P+R+FEG AL+RR+ R G L+ES+ KLDYVLAL  E+FLERRLQTLV+K G+AKSIHHARVLIRQRHIRVG+Q+VN+PSFVVR+DSQKHI+F+LTSPFGGGRPGRV+R+
Sbjct:    4 RSYSKTAKVPRRPFEAARLDSELKLVGEYGLRNKREVWRVLLTLSKIRRAARELLTLDEKDPKRLFEGNALIRRLVRVGVLDESRMKLDYVLALKAEDFLERRLQTLVYKLGLAKSIHHARVLIRQRHIRVGKQIVNVPSFVVRLDSQKHIDFALTSPFGGGRPGRVRRK 173
[Close]
BLAST of FC920873 vs. ExPASy Swiss-Prot
Match: RS9_DROME (40S ribosomal protein S9 OS=Drosophila melanogaster GN=RpS9 PE=1 SV=2)

HSP 1 Score: 259.61 bits (662), Expect = 1.169e-68
Identity = 125/170 (73.53%), Postives = 151/170 (88.82%), Query Frame = 1 
Query:   67 YGKTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGGRPGRVKRRNI 576
            + KT+  PRRPYEK RLD EL+++GEYGLR KRE+WRV+YAL++IR AAR+LLTLDEK+ +R+F+G ALLRR+ R G L+ES+ KLDYVL L +E+FLERRLQT VFK G+AKSIHHARVLIRQRHIRV +Q+VNIPSFVVR+DSQKHI+FSL SPFGGGRPGRVKR+N+
Sbjct:   10 FSKTYVTPRRPYEKARLDQELKIIGEYGLRNKREVWRVKYALAKIRKAARELLTLDEKDEKRLFQGNALLRRLVRIGVLDESRMKLDYVLGLKIEDFLERRLQTQVFKLGLAKSIHHARVLIRQRHIRVRKQVVNIPSFVVRLDSQKHIDFSLKSPFGGGRPGRVKRKNL 179
[Close]
BLAST of FC920873 vs. ExPASy Swiss-Prot
Match: RS9_RAT (40S ribosomal protein S9 OS=Rattus norvegicus GN=Rps9 PE=1 SV=4)

HSP 1 Score: 256.144 bits (653), Expect = 1.293e-67
Identity = 122/167 (73.05%), Postives = 148/167 (88.62%), Query Frame = 1 
Query:   73 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGGRPGRVKRRN 573
            KT+  PRRP+EK RLD EL+L+GEYGLR KRE+WRV++ L++IR AAR+LLTLDEK+PRR+FEG ALLRR+ R G L+E + KLDY+L L +E+FLERRLQT VFK G+AKSIHHARVLIRQRHIRV +Q+VNIPSF+VR+DSQKHI+FSL SP+GGGRPGRVKR+N
Sbjct:   11 KTYVTPRRPFEKSRLDQELKLIGEYGLRNKREVWRVKFTLAKIRKAARELLTLDEKDPRRLFEGNALLRRLVRIGVLDEGKMKLDYILGLKIEDFLERRLQTQVFKLGLAKSIHHARVLIRQRHIRVRKQVVNIPSFIVRLDSQKHIDFSLRSPYGGGRPGRVKRKN 177
[Close]
BLAST of FC920873 vs. ExPASy Swiss-Prot
Match: RS9_PAPAN (40S ribosomal protein S9 OS=Papio anubis GN=RPS9 PE=3 SV=1)

HSP 1 Score: 256.144 bits (653), Expect = 1.293e-67
Identity = 122/167 (73.05%), Postives = 148/167 (88.62%), Query Frame = 1 
Query:   73 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGGRPGRVKRRN 573
            KT+  PRRP+EK RLD EL+L+GEYGLR KRE+WRV++ L++IR AAR+LLTLDEK+PRR+FEG ALLRR+ R G L+E + KLDY+L L +E+FLERRLQT VFK G+AKSIHHARVLIRQRHIRV +Q+VNIPSF+VR+DSQKHI+FSL SP+GGGRPGRVKR+N
Sbjct:   11 KTYVTPRRPFEKSRLDQELKLIGEYGLRNKREVWRVKFTLAKIRKAARELLTLDEKDPRRLFEGNALLRRLVRIGVLDEGKMKLDYILGLKIEDFLERRLQTQVFKLGLAKSIHHARVLIRQRHIRVRKQVVNIPSFIVRLDSQKHIDFSLRSPYGGGRPGRVKRKN 177
[Close]
BLAST of FC920873 vs. ExPASy Swiss-Prot
Match: RS9_MOUSE (40S ribosomal protein S9 OS=Mus musculus GN=Rps9 PE=2 SV=3)

HSP 1 Score: 256.144 bits (653), Expect = 1.293e-67
Identity = 122/167 (73.05%), Postives = 148/167 (88.62%), Query Frame = 1 
Query:   73 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGGRPGRVKRRN 573
            KT+  PRRP+EK RLD EL+L+GEYGLR KRE+WRV++ L++IR AAR+LLTLDEK+PRR+FEG ALLRR+ R G L+E + KLDY+L L +E+FLERRLQT VFK G+AKSIHHARVLIRQRHIRV +Q+VNIPSF+VR+DSQKHI+FSL SP+GGGRPGRVKR+N
Sbjct:   11 KTYVTPRRPFEKSRLDQELKLIGEYGLRNKREVWRVKFTLAKIRKAARELLTLDEKDPRRLFEGNALLRRLVRIGVLDEGKMKLDYILGLKIEDFLERRLQTQVFKLGLAKSIHHARVLIRQRHIRVRKQVVNIPSFIVRLDSQKHIDFSLRSPYGGGRPGRVKRKN 177
[Close]
BLAST of FC920873 vs. ExPASy Swiss-Prot
Match: RS9_HUMAN (40S ribosomal protein S9 OS=Homo sapiens GN=RPS9 PE=1 SV=3)

HSP 1 Score: 256.144 bits (653), Expect = 1.293e-67
Identity = 122/167 (73.05%), Postives = 148/167 (88.62%), Query Frame = 1 
Query:   73 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGGRPGRVKRRN 573
            KT+  PRRP+EK RLD EL+L+GEYGLR KRE+WRV++ L++IR AAR+LLTLDEK+PRR+FEG ALLRR+ R G L+E + KLDY+L L +E+FLERRLQT VFK G+AKSIHHARVLIRQRHIRV +Q+VNIPSF+VR+DSQKHI+FSL SP+GGGRPGRVKR+N
Sbjct:   11 KTYVTPRRPFEKSRLDQELKLIGEYGLRNKREVWRVKFTLAKIRKAARELLTLDEKDPRRLFEGNALLRRLVRIGVLDEGKMKLDYILGLKIEDFLERRLQTQVFKLGLAKSIHHARVLIRQRHIRVRKQVVNIPSFIVRLDSQKHIDFSLRSPYGGGRPGRVKRKN 177
[Close]
BLAST of FC920873 vs. ExPASy Swiss-Prot
Match: RS9_BOVIN (40S ribosomal protein S9 OS=Bos taurus GN=RPS9 PE=2 SV=1)

HSP 1 Score: 256.144 bits (653), Expect = 1.293e-67
Identity = 122/167 (73.05%), Postives = 148/167 (88.62%), Query Frame = 1 
Query:   73 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGGRPGRVKRRN 573
            KT+  PRRP+EK RLD EL+L+GEYGLR KRE+WRV++ L++IR AAR+LLTLDEK+PRR+FEG ALLRR+ R G L+E + KLDY+L L +E+FLERRLQT VFK G+AKSIHHARVLIRQRHIRV +Q+VNIPSF+VR+DSQKHI+FSL SP+GGGRPGRVKR+N
Sbjct:   11 KTYVTPRRPFEKSRLDQELKLIGEYGLRNKREVWRVKFTLAKIRKAARELLTLDEKDPRRLFEGNALLRRLVRIGVLDEGKMKLDYILGLKIEDFLERRLQTQVFKLGLAKSIHHARVLIRQRHIRVRKQVVNIPSFIVRLDSQKHIDFSLRSPYGGGRPGRVKRKN 177
[Close]
BLAST of FC920873 vs. ExPASy Swiss-Prot
Match: RS9B_SCHPO (40S ribosomal protein S9-B OS=Schizosaccharomyces pombe GN=rps9b PE=1 SV=3)

HSP 1 Score: 252.292 bits (643), Expect = 1.867e-66
Identity = 120/172 (69.77%), Postives = 148/172 (86.05%), Query Frame = 1 
Query:   61 RNYGKTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGGRPGRVKRRNI 576
            R   KT+K PRRP+E  RLDAEL+L GEYGLR K E+WRV   LS+IR AAR+LLTLDEK+P+R+FEG A++RR+ R G L+ES+ KLDYVLAL +E+FLERRLQT VFK G+AKSIHHARVLI QRHIRVG+Q+VN+PSFVVR+D+QKHI+F+L+SP+GGGRPGR KR+ +
Sbjct:    6 RKQSKTYKVPRRPFESARLDAELKLAGEYGLRNKHEIWRVALTLSKIRRAARELLTLDEKDPKRLFEGNAIIRRLVRLGILDESRMKLDYVLALRIEDFLERRLQTQVFKLGLAKSIHHARVLIFQRHIRVGKQIVNVPSFVVRLDAQKHIDFALSSPYGGGRPGRCKRKRL 177
The following BLAST results are available for this feature:
BLAST of FC920873 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 84
Match NameE-valueIdentityDescription
RS92_ARATH7.527e-9292.1340S ribosomal protein S9-2 OS=Arabidopsis thaliana... [more]
RS91_ARATH2.677e-8989.8940S ribosomal protein S9-1 OS=Arabidopsis thaliana... [more]
RS9_PODAN1.804e-6974.7140S ribosomal protein S9 OS=Podospora anserina GN=... [more]
RS9_DROME1.169e-6873.5340S ribosomal protein S9 OS=Drosophila melanogaste... [more]
RS9_RAT1.293e-6773.0540S ribosomal protein S9 OS=Rattus norvegicus GN=R... [more]
RS9_PAPAN1.293e-6773.0540S ribosomal protein S9 OS=Papio anubis GN=RPS9 P... [more]
RS9_MOUSE1.293e-6773.0540S ribosomal protein S9 OS=Mus musculus GN=Rps9 P... [more]
RS9_HUMAN1.293e-6773.0540S ribosomal protein S9 OS=Homo sapiens GN=RPS9 P... [more]
RS9_BOVIN1.293e-6773.0540S ribosomal protein S9 OS=Bos taurus GN=RPS9 PE=... [more]
RS9B_SCHPO1.867e-6669.7740S ribosomal protein S9-B OS=Schizosaccharomyces ... [more]

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Properties
Property NameValue
Genbank descriptionC32014B05EF RVDevelop1 Citrus clementina cDNA clone C32014B05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920873 ID=FC920873; Name=FC920873; organism=Citrus clementina; type=EST; length=703bp
AGGGGGAGAGAGTGAGGGTAGCACCAGCGGCGCGCAAAGATGGTGCACGT
TTCATTCTACCGCAACTATGGGAAAACCTTCAAGAAGCCAAGACGTCCCT
ATGAGAAGGAGCGATTGGATGCTGAGTTGAGACTTGTGGGAGAGTATGGG
CTTCGCTGCAAGAGGGAACTCTGGAGGGTTCAATACGCACTGAGCCGCAT
CCGAAATGCTGCGAGGGATCTTCTCACTCTCGATGAGAAGAACCCACGAC
GTATTTTTGAGGGTGAGGCCCTTCTCAGGAGGATGCACAGGTATGGCTTC
TTGGAAGAGAGCCAGAACAAGCTTGATTATGTGTTGGCCCTCACTGTGGA
GAACTTTCTTGAGCGTCGTCTTCAGACCCTTGTGTTCAAGAGTGGCATGG
CTAAGTCAATTCACCATGCTCGAGTGCTCATCAGGCAGAGGCACATTAGG
GTTGGAAGGCAGCTTGTCAACATTCCCTCATTTGTAGTGAGGGTTGATTC
CCAGAAGCACATTGAATTCTCACTCACAAGTCCATTTGGAGGCGGGCGCC
CCGGAAGAGTGAAGAGAAGGAACATTAAGGCTGCTGCCAAGAAGGCCGCA
GGTGGAGATGGAGATGAAGAGGATGAAGAATAATTACCTTGTGTGAGCAG
ATAGTTTTTTTATGGTTACAGTAGGACTCTGGCTGAACTTGCAATCGACT
TAT
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