FC920874

Overview
NameFC920874
Unique NameFC920874
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length653
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC920874_ssr438 microsatellite FC920874_ssr438:438..447. BLAST: Citrus ESTs to Prunus persica proteins V1
FC920874_ssr410 microsatellite FC920874_ssr410:410..424. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig13960 contig Ccv1_Contig13960:1..652. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920874 vs. ExPASy Swiss-Prot
Match: WRK17_ARATH (Probable WRKY transcription factor 17 OS=Arabidopsis thaliana GN=WRKY17 PE=1 SV=2)

HSP 1 Score: 129.028 bits (323), Expect = 2.077e-29
Identity = 73/151 (48.34%), Postives = 92/151 (60.93%), Query Frame = 2
Query:  137 MAVELMGFPKRMMEDQTAIQEAATQGIKSMEHLIRLMSHHQSSNHVDCSDLTDLTVSKFKKVISLLNRTGHARFRRMPVHXXXXXXXXXXXXXXXXXGNSPHXXXXXXXXXXXXXXXXXXXXSYVQSQPHSLTLDFTKPSLFSGNVKSTEL 589
            M V++M  PK  MEDQTAIQEAA+QG+KSMEHLIR++S+     +VDCS++TD TVSKFKKVISLLNR+GHARFRR PVH                  +S                      S+VQ+   S+TLDFT+PS+F    KS+E+
Sbjct:    1 MTVDIMRLPK--MEDQTAIQEAASQGLKSMEHLIRVLSNRPEERNVDCSEITDFTVSKFKKVISLLNRSGHARFRRGPVHSPP---------------SSSVPPPVKVTTPAPTQISAPAPVSFVQANQQSVTLDFTRPSVFGAKTKSSEV 134          
BLAST of FC920874 vs. ExPASy Swiss-Prot
Match: WRK11_ARATH (Probable WRKY transcription factor 11 OS=Arabidopsis thaliana GN=WRKY11 PE=1 SV=2)

HSP 1 Score: 122.479 bits (306), Expect = 1.944e-27
Identity = 73/153 (47.71%), Postives = 88/153 (57.52%), Query Frame = 2
Query:  137 MAVELMGFPKRMMEDQTAIQEAATQGIKSMEHLIRLMSHHQSSNH-VDCSDLTDLTVSKFKKVISLLNRTGHARFRRMPVHXXXXXXXXXXXXXXXXXGNSPHXXXXXXXXXXXXXXXXXXXXSYVQSQPHSLTLDFTKPSLFSGNVKSTELE 592
            MAV+LM FPK  ++DQTAIQEAA+QG++SMEHLIR++S+     H VDCS++TD TVSKFK VISLLNRTGHARFRR PVH                                            +   P S+TLDF+KPS+F    KS ELE
Sbjct:    1 MAVDLMRFPK--IDDQTAIQEAASQGLQSMEHLIRVLSNRPEQQHNVDCSEITDFTVSKFKTVISLLNRTGHARFRRGPVH-----------STSSAASQKLQSQIVKNTQPEAPIVRTTTNHPQIVPPPSSVTLDFSKPSIFGTKAKSAELE 140          
The following BLAST results are available for this feature:
BLAST of FC920874 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
WRK17_ARATH2.077e-2948.34Probable WRKY transcription factor 17 OS=Arabidops... [more]
WRK11_ARATH1.944e-2747.71Probable WRKY transcription factor 11 OS=Arabidops... [more]
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Properties
Property NameValue
Genbank descriptionC32014B06EF RVDevelop1 Citrus clementina cDNA clone C32014B06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920874 ID=FC920874; Name=FC920874; organism=Citrus clementina; type=EST; length=653bp
AGGAAGAGAGATTCCCTCCACCCTCGAAGCCTCAGCCTTAAGTTTTACTT
TTTCAAAGGGTTTCGTCGATTGACATCTTGAGGCTTTTCCAAATTGCTCT
CATTTGGTAGCAGAAACTTTTTCGTTTTTCCAAATCATGGCGGTGGAGCT
GATGGGATTTCCAAAAAGGATGATGGAAGATCAGACGGCGATACAAGAAG
CTGCAACGCAAGGGATCAAAAGCATGGAGCACCTGATCCGTCTCATGTCT
CATCACCAATCCTCGAATCACGTTGACTGCTCGGACCTCACCGATCTCAC
CGTCTCTAAGTTCAAAAAAGTCATTTCCCTGCTCAACCGAACCGGTCACG
CCCGGTTCAGGCGCATGCCGGTTCACTCTTCGCCTTCATCTTCATCTGCA
TCTGCGCCAGCCGCCGCCGCCGCCTCAGGCAACTCTCCACACACACAGAC
CTTAACTCTTACTCCGCCTGCTCCTACGATGGCTGTCGCTCCCTCTACGG
CGAGTTACGTCCAGTCACAGCCGCACAGTCTGACTCTTGATTTTACAAAA
CCTAGTTTGTTTAGCGGAAACGTCAAGAGCACTGAGCTCGAGTTTTCCAA
AGACAGCTTCTGTGTGTCGTCGAACTCGTCCTTCATGTCCTCTGCTATCA
CCG
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