FC920882
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC920882 vs. ExPASy Swiss-Prot
Match: RBH1B_ARATH (Ras-related protein RABH1B OS=Arabidopsis thaliana GN=RABH1B PE=1 SV=1) HSP 1 Score: 307.76 bits (787), Expect = 9.281e-88 Identity = 159/182 (87.36%), Postives = 165/182 (90.66%), Query Frame = 2 Query: 101 MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIAAALPGMETLSSQSKK 646 MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIR RQSFLNT+KWIDEVRTERGSDVI+VLVGNKTDLV+KRQVSIEE EAK+RELNVMFIETSAKAGFNIK LFRKIAAALPGMETLSS ++ Sbjct: 1 MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWIDEVRTERGSDVIVVLVGNKTDLVDKRQVSIEEAEAKARELNVMFIETSAKAGFNIKALFRKIAAALPGMETLSSTKQE 182 HSP 2 Score: 37.3502 bits (85), Expect = 9.281e-88 Identity = 17/25 (68.00%), Postives = 21/25 (84.00%), Query Frame = 1 Query: 634 TKQEEMVDVNLRSTTGNASQSQSQS 708 TKQE+MVDVNL+S+ NAS +Q QS Sbjct: 179 TKQEDMVDVNLKSSNANASLAQQQS 203
BLAST of FC920882 vs. ExPASy Swiss-Prot
Match: RBH1C_ARATH (Ras-related protein RABH1C OS=Arabidopsis thaliana GN=RABH1C PE=1 SV=1) HSP 1 Score: 266.159 bits (679), Expect = 1.889e-73 Identity = 141/182 (77.47%), Postives = 151/182 (82.97%), Query Frame = 2 Query: 101 MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIAAALPGMETLSSQSK 643 MA VS LAK+KLVFLGDQSVGKTSIITRFMYDKFD TYQ TIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIR RQ+FLNTSKWI++V ERG S+VIIVLVGNKTDLVEKRQVSI EGE K +E VMFIETSAK FNIK LFRKIAAALPG+++ S +K Sbjct: 1 MASVSPLAKFKLVFLGDQSVGKTSIITRFMYDKFDTTYQPTIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAIVVYDVSNRQTFLNTSKWIEDVHRERGQSNVIIVLVGNKTDLVEKRQVSISEGEDKGKEYGVMFIETSAKENFNIKALFRKIAAALPGVDSYSLATK 182 HSP 2 Score: 31.187 bits (69), Expect = 1.889e-73 Identity = 15/30 (50.00%), Postives = 21/30 (70.00%), Query Frame = 1 Query: 616 DGNTFFTKQEEMVDVNLRSTTGNASQSQSQ 705 D + TK ++MVDVNL+ TT N+SQ + Q Sbjct: 175 DSYSLATKSDDMVDVNLK-TTSNSSQGEQQ 203
BLAST of FC920882 vs. ExPASy Swiss-Prot
Match: RAB6A_PONAB (Ras-related protein Rab-6A OS=Pongo abelii GN=RAB6A PE=2 SV=3) HSP 1 Score: 268.47 bits (685), Expect = 2.548e-71 Identity = 134/176 (76.14%), Postives = 151/176 (85.80%), Query Frame = 2 Query: 119 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIAAALPGMETLSSQSKK 646 L K+KLVFLG+QSVGKTS+ITRFMYD FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIR SF T+KWID+VRTERGSDVII+LVGNKTDL +KRQVSIEEGE K++ELNVMFIETSAKAG+N+K LFR++AAALPGME+ +S++ Sbjct: 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMESTQDRSRE 186
BLAST of FC920882 vs. ExPASy Swiss-Prot
Match: RAB6A_MOUSE (Ras-related protein Rab-6A OS=Mus musculus GN=Rab6a PE=1 SV=4) HSP 1 Score: 268.47 bits (685), Expect = 2.548e-71 Identity = 134/176 (76.14%), Postives = 151/176 (85.80%), Query Frame = 2 Query: 119 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIAAALPGMETLSSQSKK 646 L K+KLVFLG+QSVGKTS+ITRFMYD FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIR SF T+KWID+VRTERGSDVII+LVGNKTDL +KRQVSIEEGE K++ELNVMFIETSAKAG+N+K LFR++AAALPGME+ +S++ Sbjct: 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMESTQDRSRE 186
BLAST of FC920882 vs. ExPASy Swiss-Prot
Match: RAB6A_HUMAN (Ras-related protein Rab-6A OS=Homo sapiens GN=RAB6A PE=1 SV=3) HSP 1 Score: 268.47 bits (685), Expect = 2.548e-71 Identity = 134/176 (76.14%), Postives = 151/176 (85.80%), Query Frame = 2 Query: 119 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIAAALPGMETLSSQSKK 646 L K+KLVFLG+QSVGKTS+ITRFMYD FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIR SF T+KWID+VRTERGSDVII+LVGNKTDL +KRQVSIEEGE K++ELNVMFIETSAKAG+N+K LFR++AAALPGME+ +S++ Sbjct: 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMESTQDRSRE 186
BLAST of FC920882 vs. ExPASy Swiss-Prot
Match: RAB6A_CHICK (Ras-related protein Rab-6A OS=Gallus gallus GN=RAB6A PE=2 SV=3) HSP 1 Score: 268.085 bits (684), Expect = 3.328e-71 Identity = 133/176 (75.57%), Postives = 151/176 (85.80%), Query Frame = 2 Query: 119 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIAAALPGMETLSSQSKK 646 L K+KLVFLG+QSVGKTS+ITRFMYD FDNTYQATIGIDFLSKTMYLEDRT+RLQLWDTAGQERFRSLIPSYIR SF T+KWID+VRTERGSDVII+LVGNKTDL +KRQVSIEEGE K++ELNVMFIETSAKAG+N+K LFR++AAALPGME+ +S++ Sbjct: 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMESTQDKSRE 186
BLAST of FC920882 vs. ExPASy Swiss-Prot
Match: RAB6B_MOUSE (Ras-related protein Rab-6B OS=Mus musculus GN=Rab6b PE=2 SV=1) HSP 1 Score: 264.233 bits (674), Expect = 4.805e-70 Identity = 130/176 (73.86%), Postives = 150/176 (85.23%), Query Frame = 2 Query: 119 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIAAALPGMETLSSQSKK 646 L K+KLVFLG+QSVGKTS+ITRFMYD FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIR SF TSKWID+VRTERGSDVII+LVGNKTDL +KRQ++IEEGE +++EL+VMFIETSAK G+N+K LFR++A+ALPGME + +SK+ Sbjct: 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNLNSFQQTSKWIDDVRTERGSDVIIMLVGNKTDLADKRQITIEEGEQRAKELSVMFIETSAKTGYNVKQLFRRVASALPGMENVQEKSKE 186
BLAST of FC920882 vs. ExPASy Swiss-Prot
Match: RAB6B_HUMAN (Ras-related protein Rab-6B OS=Homo sapiens GN=RAB6B PE=1 SV=1) HSP 1 Score: 264.233 bits (674), Expect = 4.805e-70 Identity = 130/176 (73.86%), Postives = 150/176 (85.23%), Query Frame = 2 Query: 119 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIAAALPGMETLSSQSKK 646 L K+KLVFLG+QSVGKTS+ITRFMYD FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIR SF TSKWID+VRTERGSDVII+LVGNKTDL +KRQ++IEEGE +++EL+VMFIETSAK G+N+K LFR++A+ALPGME + +SK+ Sbjct: 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNLNSFQQTSKWIDDVRTERGSDVIIMLVGNKTDLADKRQITIEEGEQRAKELSVMFIETSAKTGYNVKQLFRRVASALPGMENVQEKSKE 186
BLAST of FC920882 vs. ExPASy Swiss-Prot
Match: RAB6B_BOVIN (Ras-related protein Rab-6B OS=Bos taurus GN=RAB6B PE=2 SV=1) HSP 1 Score: 264.233 bits (674), Expect = 4.805e-70 Identity = 130/176 (73.86%), Postives = 150/176 (85.23%), Query Frame = 2 Query: 119 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIAAALPGMETLSSQSKK 646 L K+KLVFLG+QSVGKTS+ITRFMYD FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIR SF TSKWID+VRTERGSDVII+LVGNKTDL +KRQ++IEEGE +++EL+VMFIETSAK G+N+K LFR++A+ALPGME + +SK+ Sbjct: 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNLNSFQQTSKWIDDVRTERGSDVIIMLVGNKTDLADKRQITIEEGEQRAKELSVMFIETSAKTGYNVKQLFRRVASALPGMENVQEKSKE 186
BLAST of FC920882 vs. ExPASy Swiss-Prot
Match: RAB6A_CAEEL (Ras-related protein Rab-6.1 OS=Caenorhabditis elegans GN=rab-6.1 PE=2 SV=1) HSP 1 Score: 258.455 bits (659), Expect = 2.637e-68 Identity = 129/169 (76.33%), Postives = 143/169 (84.62%), Query Frame = 2 Query: 113 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIAAALPGM 619 +AL K+KLVFLG+QSVGKTSIITRFMYD FDNTYQATIGIDFLSKTMYLEDRT+RLQLWDTAGQERFRSLIPSYIR SF T+KW+D+VR ERG DVIIVLVGNKTDL +KRQVS E+GE K+R+LNVMFIETSAKAG+N+K LFRKIA ALPG+ Sbjct: 7 NALKKFKLVFLGEQSVGKTSIITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITNANSFHQTTKWVDDVRNERGCDVIIVLVGNKTDLADKRQVSTEDGEKKARDLNVMFIETSAKAGYNVKQLFRKIATALPGI 175 The following BLAST results are available for this feature:
BLAST of FC920882 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >FC920882 ID=FC920882; Name=FC920882; organism=Citrus clementina; type=EST; length=712bpback to top |