FC920884

Overview
NameFC920884
Unique NameFC920884
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length689
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14209 contig Ccv1_Contig14209:1..689. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920884 vs. ExPASy Swiss-Prot
Match: NARGL_MOUSE (NMDA receptor-regulated 1-like protein OS=Mus musculus GN=Narg1l PE=2 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 8.944e-42
Identity = 87/226 (38.50%), Postives = 136/226 (60.18%), Query Frame = 3
Query:   21 LLKSLAQQYTWSSAVKRIPLDFLQGEKFREAAFNYVRPLLTKGVPSLFSDLSPLYDQPGKADILEQLILELEHSIGTTGKYPGRE--EKEPPSTLLWTLFFLAQHYDRRGQYDVAISKIDEAIEHTPTVIDLYSVKSRILKHXXXXXXXXXXXXXXRCMDLADRYVNSECVKRMLQADQVSLAEKTAALFTKDG-DQHNNLHDMQCMWYELASGESYFRQGDLGRA 689
            L + +++Q+  + + +R+PL F  G+KFRE    ++RP  +KG P LF+ L  LY    K  I+++L+   E S+   G +   E  EKEPP+TL+W  +FLAQHYD+ GQY +A+  I+  I  TPT+I+L+ +K++I KH              + +D ADR++NS+C K ML+A+ +  AE+  + FT++G     NL++MQCMW+E     +Y R G  G A
Sbjct:  279 LYEEVSKQHPRAVSPRRLPLSFAPGKKFRELMDKFLRPNFSKGCPPLFTTLKSLYCDTEKVSIIQELVTNYEASLKMNGYFSPYENGEKEPPTTLIWVQYFLAQHYDKLGQYFLALEYINAVIASTPTLIELFYMKAKIYKHMGNLKEAAQWMDEAQSLDTADRFINSKCAKYMLRANMIKEAEEMCSRFTREGTSAMENLNEMQCMWFETECISAYQRLGRYGDA 504          
BLAST of FC920884 vs. ExPASy Swiss-Prot
Match: NAT1_SCHPO (N-terminal acetyltransferase A complex subunit nat1 OS=Schizosaccharomyces pombe GN=nat1 PE=2 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 5.797e-41
Identity = 87/223 (39.01%), Postives = 132/223 (59.19%), Query Frame = 3
Query:   21 LLKSLAQQYTWSSAVKRIPLDFLQGEKFREAAFNYVRPLLTKGVPSLFSDLSPLYDQPGKADILEQLILELEHSIGTTGKYPGREEK---EPPSTLLWTLFFLAQHYDRRGQYDVAISKIDEAIEHTPTVIDLYSVKSRILKHXXXXXXXXXXXXXXRCMDLADRYVNSECVKRMLQADQVSLAEKTAALFTKD---GDQHNNLHDMQCMWYELASGESYFRQ 671
            L   LA++Y  S    R+PL+ L+G++F      Y+R  L +G+PS+F D+  LY    K  ++E L+ +   S+ TT K+   ++    E P+TLLWT +FLAQH+D  G+ + A   +D AI+HTPT+++L+  K+RI KH              R +DL DR++N +C K ML+ D+  LA KT +LFT++   G    +L DMQC+WY L  G+S+ RQ
Sbjct:  284 LYSQLAKRYPKSECPTRLPLEKLEGDEFLTHVDLYLRKKLKRGIPSVFVDVKSLYKDTKKCKVVEDLVSKYASSLSTTNKFSEDDDNSQIEIPTTLLWTYYFLAQHFDHVGELEKAEKYVDLAIDHTPTLVELFMTKARISKHKGELQTAMEIMDHARKLDLQDRFINGKCAKYMLRNDENELAAKTVSLFTRNEAVGGAVGDLADMQCLWYMLEDGKSFARQ 506          
BLAST of FC920884 vs. ExPASy Swiss-Prot
Match: NARGL_HUMAN (NMDA receptor-regulated 1-like protein OS=Homo sapiens GN=NARG1L PE=1 SV=2)

HSP 1 Score: 164.081 bits (414), Expect = 6.410e-40
Identity = 84/226 (37.17%), Postives = 135/226 (59.73%), Query Frame = 3
Query:   21 LLKSLAQQYTWSSAVKRIPLDFLQGEKFREAAFNYVRPLLTKGVPSLFSDLSPLYDQPGKADILEQLILELEHSIGTTGKYPGRE--EKEPPSTLLWTLFFLAQHYDRRGQYDVAISKIDEAIEHTPTVIDLYSVKSRILKHXXXXXXXXXXXXXXRCMDLADRYVNSECVKRMLQADQVSLAEKTAALFTKDG-DQHNNLHDMQCMWYELASGESYFRQGDLGRA 689
            + + +++Q+  +   +R+PL  + GE+FRE    ++R   +KG P LF+ L  LY    K  I+++L+   E S+ T   +   E  EKEPP+TLLW  +FLAQH+D+ GQY +A+  I+ AI  TPT+I+L+ +K++I KH              + +D ADR++NS+C K ML+A+ +  AE+  + FT++G     NL++MQCMW++     +Y R G  G A
Sbjct:  279 IYEEISKQHPKAITPRRLPLTLVPGERFRELMDKFLRVNFSKGCPPLFTTLKSLYYNTEKVSIIQELVTNYEASLKTCDFFSPYENGEKEPPTTLLWVQYFLAQHFDKLGQYSLALDYINAAIASTPTLIELFYMKAKIYKHIGNLKEAAKWMDEAQSLDTADRFINSKCAKYMLRANMIKEAEEMCSKFTREGTSAMENLNEMQCMWFQTECISAYQRLGRYGDA 504          
BLAST of FC920884 vs. ExPASy Swiss-Prot
Match: NARG1_PONAB (NMDA receptor-regulated protein 1 OS=Pongo abelii GN=NARG1 PE=2 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 4.155e-39
Identity = 80/211 (37.91%), Postives = 129/211 (61.14%), Query Frame = 3
Query:   66 KRIPLDFLQGEKFREAAFNYVRPLLTKGVPSLFSDLSPLYDQPGKADILEQLILELEHSIGTTGKYPGREE--KEPPSTLLWTLFFLAQHYDRRGQYDVAISKIDEAIEHTPTVIDLYSVKSRILKHXXXXXXXXXXXXXXRCMDLADRYVNSECVKRMLQADQVSLAEKTAALFTKDGDQH-NNLHDMQCMWYELASGESYFRQGDLGRA 689
            +R+PL+FL GEKF+E    ++R   +KG P +F+ L  LY    K  I+E+L++  E S+ +   +   ++  +EPP+TLLW  ++LAQHYD+ GQ  +A+  I+ AIE TPT+I+L+ VK++I KH              + +D ADR++NS+C K ML+A+ +  AE+  + FT++G     NL++MQCMW++    ++Y      G A
Sbjct:  294 RRLPLNFLSGEKFKECLDKFLRMNFSKGCPPVFNTLRSLYKDKEKVAIIEELVVGYETSLKSCRLFNPNDDGKEEPPTTLLWVQYYLAQHYDKIGQPSIALEYINTAIESTPTLIELFLVKAKIYKHAGNIKEAARWMDEAQALDTADRFINSKCAKYMLKANLIKEAEEMCSKFTREGTSAVENLNEMQCMWFQTECAQAYKAMNKFGEA 504          
BLAST of FC920884 vs. ExPASy Swiss-Prot
Match: NARG1_HUMAN (NMDA receptor-regulated protein 1 OS=Homo sapiens GN=NARG1 PE=1 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 4.155e-39
Identity = 80/211 (37.91%), Postives = 129/211 (61.14%), Query Frame = 3
Query:   66 KRIPLDFLQGEKFREAAFNYVRPLLTKGVPSLFSDLSPLYDQPGKADILEQLILELEHSIGTTGKYPGREE--KEPPSTLLWTLFFLAQHYDRRGQYDVAISKIDEAIEHTPTVIDLYSVKSRILKHXXXXXXXXXXXXXXRCMDLADRYVNSECVKRMLQADQVSLAEKTAALFTKDGDQH-NNLHDMQCMWYELASGESYFRQGDLGRA 689
            +R+PL+FL GEKF+E    ++R   +KG P +F+ L  LY    K  I+E+L++  E S+ +   +   ++  +EPP+TLLW  ++LAQHYD+ GQ  +A+  I+ AIE TPT+I+L+ VK++I KH              + +D ADR++NS+C K ML+A+ +  AE+  + FT++G     NL++MQCMW++    ++Y      G A
Sbjct:  294 RRLPLNFLSGEKFKECLDKFLRMNFSKGCPPVFNTLRSLYKDKEKVAIIEELVVGYETSLKSCRLFNPNDDGKEEPPTTLLWVQYYLAQHYDKIGQPSIALEYINTAIESTPTLIELFLVKAKIYKHAGNIKEAARWMDEAQALDTADRFINSKCAKYMLKANLIKEAEEMCSKFTREGTSAVENLNEMQCMWFQTECAQAYKAMNKFGEA 504          
BLAST of FC920884 vs. ExPASy Swiss-Prot
Match: NARG1_MOUSE (NMDA receptor-regulated protein 1 OS=Mus musculus GN=Narg1 PE=1 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 2.062e-38
Identity = 79/211 (37.44%), Postives = 129/211 (61.14%), Query Frame = 3
Query:   66 KRIPLDFLQGEKFREAAFNYVRPLLTKGVPSLFSDLSPLYDQPGKADILEQLILELEHSIGTTGKYPGREE--KEPPSTLLWTLFFLAQHYDRRGQYDVAISKIDEAIEHTPTVIDLYSVKSRILKHXXXXXXXXXXXXXXRCMDLADRYVNSECVKRMLQADQVSLAEKTAALFTKDGDQH-NNLHDMQCMWYELASGESYFRQGDLGRA 689
            +R+PL+FL GEKF+E    ++R   +KG P +F+ L  LY    K  I+E+L++  E S+ +   +   ++  +EPP+TLLW  ++LAQHYD+ GQ  +A+  I+ AIE TPT+I+L+ VK++I KH              + +D ADR++NS+C K +L+A+ +  AE+  + FT++G     NL++MQCMW++    ++Y      G A
Sbjct:  294 RRLPLNFLSGEKFKECLDRFLRMNFSKGCPPVFNTLRSLYRDKEKVAIVEELVVGYETSLKSCRLFNPNDDGKEEPPTTLLWVQYYLAQHYDKIGQPSIALEYINTAIESTPTLIELFLVKAKIYKHAGNIKEAARWMDEAQALDTADRFINSKCAKYVLKANLIKEAEEMCSKFTREGTSAVENLNEMQCMWFQTECAQAYKAMNKFGEA 504          
BLAST of FC920884 vs. ExPASy Swiss-Prot
Match: NAT1_YEAST (N-terminal acetyltransferase A complex subunit NAT1 OS=Saccharomyces cerevisiae GN=NAT1 PE=1 SV=2)

HSP 1 Score: 122.479 bits (306), Expect = 2.139e-27
Identity = 73/224 (32.59%), Postives = 119/224 (53.12%), Query Frame = 3
Query:   15 RCLLKSLAQQYTWSSAVKRIPLDFLQG-EKFREAAFNYVRPLLTKGVPSLFSDLSPLYDQPGK--ADILEQLILELEHSIGTTGKYPGREEKEPPSTLLWTLFFLAQHYDRRGQYDVAISKIDEAIEHTPTVIDLYSVKSRILKHXXXXXXXXXXXXXXRCMDLADRYVNSECVKRMLQADQVSLAEKTAALFTKDGDQHN---NLHDMQCMWYELASGESYFR 668
            + L   L Q Y      K IPL FLQ  E+  +    YV P L +GVP+ FS++ PLY +     + +LE+++L+            G +  + P   +WT ++L+QH+     +  A   ID A++HTPT+++ Y +K+RILKH              R +DL DR++N + VK  L+A+ +  A + A+LFTK+ D  N   +LH ++  W+ +   E+Y+R
Sbjct:  295 KALYGKLEQFYPRCEPPKFIPLTFLQDKEELSKKLREYVLPQLERGVPATFSNVKPLYQRRKSKVSPLLEKIVLDY---------LSGLDPTQDPIPFIWTNYYLSQHFLFLKDFPKAQEYIDAALDHTPTLVEFYILKARILKHLGLMDTAAGILEEGRQLDLQDRFINCKTVKYFLRANNIDKAVEVASLFTKNDDSVNGIKDLHLVEASWFIVEQAEAYYR 509          
The following BLAST results are available for this feature:
BLAST of FC920884 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
NARGL_MOUSE8.944e-4238.50NMDA receptor-regulated 1-like protein OS=Mus musc... [more]
NAT1_SCHPO5.797e-4139.01N-terminal acetyltransferase A complex subunit nat... [more]
NARGL_HUMAN6.410e-4037.17NMDA receptor-regulated 1-like protein OS=Homo sap... [more]
NARG1_PONAB4.155e-3937.91NMDA receptor-regulated protein 1 OS=Pongo abelii ... [more]
NARG1_HUMAN4.155e-3937.91NMDA receptor-regulated protein 1 OS=Homo sapiens ... [more]
NARG1_MOUSE2.062e-3837.44NMDA receptor-regulated protein 1 OS=Mus musculus ... [more]
NAT1_YEAST2.139e-2732.59N-terminal acetyltransferase A complex subunit NAT... [more]
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Properties
Property NameValue
Genbank descriptionC32014C06EF RVDevelop1 Citrus clementina cDNA clone C32014C06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920884 ID=FC920884; Name=FC920884; organism=Citrus clementina; type=EST; length=689bp
GAAATTGATGAGTTAGATGCCTTCTCAAATCTCTTGCTCAGCAATACACA
TGGTCATCAGCTGTCAAGAGAATACCTCTTGATTTTCTACAAGGTGAAAA
GTTTCGTGAAGCTGCATTCAATTATGTTAGGCCTCTCTTGACCAAGGGAG
TTCCTTCATTGTTCTCGGATCTTTCTCCTTTATATGATCAACCTGGCAAG
GCAGACATTCTGGAGCAACTTATTCTTGAGTTGGAACATTCAATTGGGAC
AACTGGGAAATATCCTGGGAGGGAAGAAAAAGAGCCCCCTTCGACACTTT
TATGGACTTTGTTTTTCTTGGCCCAGCATTATGACAGGCGGGGCCAATAT
GATGTTGCTATCTCTAAAATAGATGAGGCTATAGAGCACACTCCAACTGT
CATTGATTTGTACTCTGTCAAGAGCCGCATATTGAAGCATGCAGGTGATT
TGGCAGCGGCTGCTACATTGGCAGATGAAGCTAGATGTATGGATCTTGCA
GATCGATATGTAAATAGTGAATGTGTCAAGCGCATGTTACAGGCTGATCA
GGTCTCCTTGGCAGAAAAAACTGCTGCATTATTCACAAAAGATGGAGATC
AACACAACAACCTTCATGACATGCAGTGCATGTGGTATGAACTTGCTTCT
GGCGAAAGCTACTTCCGCCAAGGTGACCTTGGACGTGCT
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