FC920886

Overview
NameFC920886
Unique NameFC920886
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length602
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920886 vs. ExPASy Swiss-Prot
Match: PER29_ARATH (Peroxidase 29 OS=Arabidopsis thaliana GN=PER29 PE=2 SV=2)

HSP 1 Score: 90.8929 bits (224), Expect = 5.335e-18
Identity = 53/117 (45.30%), Postives = 69/117 (58.97%), Query Frame = 2
Query:  263 MVLILWGSCCL---FAGGNGVLVLHFYKKSCPSAEMPVKEEMKRNMLSDISSAAAILRLDFHDCQVDGCDGSILLGN-SNGITTETLSDKNFGIRKVDIINEIKSSLETLCPETVSC 601
            +V+ L  SC +       N  L   +Y+K+CP  E  V+  +    + D +S AA+LRL FHDCQV GCD SILL    +   TE  S KNFGIRK D++  IK+SLE  CP+ VSC
Sbjct:   17 LVMSLLCSCIIGDQMETNNEGLSYSYYEKTCPKVEEIVRSSLSSMFILDPTSPAALLRLMFHDCQVQGCDASILLEPIRDQQFTELDSAKNFGIRKRDLVGSIKTSLELECPKQVSC 133          
BLAST of FC920886 vs. ExPASy Swiss-Prot
Match: PER15_ARATH (Peroxidase 15 OS=Arabidopsis thaliana GN=PER15 PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.552e-17
Identity = 45/103 (43.69%), Postives = 63/103 (61.17%), Query Frame = 2
Query:  296 FAGGNGVLVLHFYKKSCPSAEMPVKEEMKRNMLSDISSAAAILRLDFHDCQVDGCDGSILLGNSNGITTETLSDKNF-GIRKVDIINEIKSSLETLCPETVSC 601
            + G  G L   FY+ SCP AE  V+  + + +  +   AA+++RL FHDC V GCDGS+LL  S  I TE  S+ N    R  ++++EIK++LE  CP TVSC
Sbjct:   29 YGGDKGNLFPGFYRSSCPRAEEIVRSVVAKAVARETRMAASLMRLHFHDCFVQGCDGSLLLDTSGSIVTEKNSNPNSRSARGFEVVDEIKAALENECPNTVSC 131          
BLAST of FC920886 vs. ExPASy Swiss-Prot
Match: PER17_ARATH (Peroxidase 17 OS=Arabidopsis thaliana GN=PER17 PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.027e-17
Identity = 40/92 (43.48%), Postives = 61/92 (66.30%), Query Frame = 2
Query:  329 FYKKSCPSAEMPVKEEMKRNMLSDISSAAAILRLDFHDCQVDGCDGSILLGNSNGITTETLSDKNF-GIRKVDIINEIKSSLETLCPETVSC 601
            FY ++CP AE  V+ EMK+ M+ +  S A+++R  FHDC V+GCD S+LL ++  +  E LS  N   +R  +++++IK +LE  CP TVSC
Sbjct:   27 FYSETCPEAESIVRREMKKAMIKEARSVASVMRFQFHDCFVNGCDASLLLDDTPNMLGEKLSLSNIDSLRSFEVVDDIKEALEKACPATVSC 118          
BLAST of FC920886 vs. ExPASy Swiss-Prot
Match: PER40_ARATH (Peroxidase 40 OS=Arabidopsis thaliana GN=PER40 PE=2 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 4.516e-17
Identity = 45/98 (45.92%), Postives = 64/98 (65.31%), Query Frame = 2
Query:  317 LVLHF--YKKSCPSAEMPVKEEMKRNMLSDISSAAAILRLDFHDCQVDGCDGSILLGNSNGITTETLSDKNF-GIRKVDIINEIKSSLETLCPETVSC 601
            LVL F  Y+ SCP AE  V   ++  +L D   AA++LRL FHDC V+GCD S+LL ++ G+  E  +  N   +R  ++I+ IKS +E++CPETVSC
Sbjct:   48 LVLDFGLYRNSCPEAESIVYSWVETTVLEDPRMAASLLRLHFHDCFVNGCDASVLLDDTEGLVGEKTAPPNLNSLRGFEVIDSIKSDIESVCPETVSC 145          
BLAST of FC920886 vs. ExPASy Swiss-Prot
Match: PER14_ARATH (Peroxidase 14 OS=Arabidopsis thaliana GN=PER14 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 5.899e-17
Identity = 46/114 (40.35%), Postives = 65/114 (57.02%), Query Frame = 2
Query:  263 MVLILWGSCCLFAGGNGVLVLHFYKKSCPSAEMPVKEEMKRNMLSDISSAAAILRLDFHDCQVDGCDGSILLGNSNGITTETLSDKNF-GIRKVDIINEIKSSLETLCPETVSC 601
            + L +  +   F G    L   FY+ SCP AE  V+  + +    +   AA+++RL FHDC V GCDGS+LL  S  I TE  S+ N    R  ++++EIK++LE  CP TVSC
Sbjct:   17 LTLCICDNASNFGGNKRNLFPDFYRSSCPRAEEIVRSVVAKAFERETRMAASLMRLHFHDCFVQGCDGSLLLDTSGSIVTEKNSNPNSRSARGFEVVDEIKAALENECPNTVSC 130          
BLAST of FC920886 vs. ExPASy Swiss-Prot
Match: PER21_ARATH (Peroxidase 21 OS=Arabidopsis thaliana GN=PER21 PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.314e-16
Identity = 41/103 (39.81%), Postives = 64/103 (62.14%), Query Frame = 2
Query:  293 LFAGGNGVLVLHFYKKSCPSAEMPVKEEMKRNMLSDISSAAAILRLDFHDCQVDGCDGSILLGNSNGITTETLSDKNFGIRKVDIINEIKSSLETLCPETVSC 601
            +F  GNG L +++YK+SCP AE  ++++++       ++A + LR  FHDC V  CD S+LL  + G+ +E  S ++FG+R    +  IK +LE  CP TVSC
Sbjct:   22 IFHIGNGELEMNYYKESCPKAEEIIRQQVETLYYKHGNTAVSWLRNLFHDCVVKSCDASLLLETARGVESEQKSKRSFGMRNFKYVKIIKDALEKECPSTVSC 124          
BLAST of FC920886 vs. ExPASy Swiss-Prot
Match: PER13_ARATH (Peroxidase 13 OS=Arabidopsis thaliana GN=PER13 PE=1 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 1.716e-16
Identity = 42/91 (46.15%), Postives = 58/91 (63.74%), Query Frame = 2
Query:  329 FYKKSCPSAEMPVKEEMKRNMLSDISSAAAILRLDFHDCQVDGCDGSILLGNSNGITTETLSDKNFGIRKVDIINEIKSSLETLCPETVSC 601
            FY ++CPSAE  V++ +++ + +D   AA +LRL FHDC V+GCDGSIL+    G   E  +  N G+   D+I+E KS LE  CP  VSC
Sbjct:   28 FYSETCPSAESIVRDVVQQAVTNDPGKAAVLLRLQFHDCFVEGCDGSILI-KHGGNDDERFAAGNAGVAGFDVIDEAKSELERFCPGVVSC 117          
BLAST of FC920886 vs. ExPASy Swiss-Prot
Match: PER36_ARATH (Peroxidase 36 OS=Arabidopsis thaliana GN=PER36 PE=2 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 2.242e-16
Identity = 44/92 (47.83%), Postives = 61/92 (66.30%), Query Frame = 2
Query:  329 FYKKSCPSAEMPVKEEMKRNMLSDISSAAAILRLDFHDCQVDGCDGSILLGNSNGITTETLSDKN-FGIRKVDIINEIKSSLETLCPETVSC 601
            FY+ SCP+A+  V+  +     +D   AA+ILRL FHDC V+GCD S+LL +S  + +E  S+ N    R  ++I+EIKS+LE  CPETVSC
Sbjct:   45 FYENSCPNAQAIVQSYVANAYFNDPRMAASILRLHFHDCFVNGCDASVLLDSSGTMESEKRSNANRDSARGFEVIDEIKSALENECPETVSC 136          
BLAST of FC920886 vs. ExPASy Swiss-Prot
Match: PER28_ARATH (Peroxidase 28 OS=Arabidopsis thaliana GN=PER28 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.242e-16
Identity = 40/95 (42.11%), Postives = 59/95 (62.11%), Query Frame = 2
Query:  317 LVLHFYKKSCPSAEMPVKEEMKRNMLSDISSAAAILRLDFHDCQVDGCDGSILLGNSNGITTETLSDKNFGIRKVDIINEIKSSLETLCPETVSC 601
            L   FY +SCP+AE  V+  +++    D S  AA+ R+ FHDC V GCD S+L+  +    +E  +  NF +R  ++I+EIK++LE  CP TVSC
Sbjct:   23 LKFKFYSESCPNAETIVENLVRQQFARDPSITAALTRMHFHDCFVQGCDASLLIDPTTSQLSEKNAGPNFSVRGFELIDEIKTALEAQCPSTVSC 117          
BLAST of FC920886 vs. ExPASy Swiss-Prot
Match: PERX_TOBAC (Lignin-forming anionic peroxidase OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 2.927e-16
Identity = 43/103 (41.75%), Postives = 62/103 (60.19%), Query Frame = 2
Query:  293 LFAGGNGVLVLHFYKKSCPSAEMPVKEEMKRNMLSDISSAAAILRLDFHDCQVDGCDGSILLGNSNGITTETLSDKNFGIRKVDIINEIKSSLETLCPETVSC 601
            +F   N  L   FY  +CP+    V+  M +   +D  + A I+RL FHDC V+GCDGSILL +++G  TE  +  N G    DI+++IK++LE +CP  VSC
Sbjct:   16 IFGASNAQLSATFYDTTCPNVTSIVRGVMDQRQRTDARAGAKIIRLHFHDCFVNGCDGSILL-DTDGTQTEKDAPANVGAGGFDIVDDIKTALENVCPGVVSC 117          
The following BLAST results are available for this feature:
BLAST of FC920886 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 90
Match NameE-valueIdentityDescription
PER29_ARATH5.335e-1845.30Peroxidase 29 OS=Arabidopsis thaliana GN=PER29 PE=... [more]
PER15_ARATH1.552e-1743.69Peroxidase 15 OS=Arabidopsis thaliana GN=PER15 PE=... [more]
PER17_ARATH2.027e-1743.48Peroxidase 17 OS=Arabidopsis thaliana GN=PER17 PE=... [more]
PER40_ARATH4.516e-1745.92Peroxidase 40 OS=Arabidopsis thaliana GN=PER40 PE=... [more]
PER14_ARATH5.899e-1740.35Peroxidase 14 OS=Arabidopsis thaliana GN=PER14 PE=... [more]
PER21_ARATH1.314e-1639.81Peroxidase 21 OS=Arabidopsis thaliana GN=PER21 PE=... [more]
PER13_ARATH1.716e-1646.15Peroxidase 13 OS=Arabidopsis thaliana GN=PER13 PE=... [more]
PER36_ARATH2.242e-1647.83Peroxidase 36 OS=Arabidopsis thaliana GN=PER36 PE=... [more]
PER28_ARATH2.242e-1642.11Peroxidase 28 OS=Arabidopsis thaliana GN=PER28 PE=... [more]
PERX_TOBAC2.927e-1641.75Lignin-forming anionic peroxidase OS=Nicotiana tab... [more]

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Properties
Property NameValue
Genbank descriptionC32014C08EF RVDevelop1 Citrus clementina cDNA clone C32014C08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920886 ID=FC920886; Name=FC920886; organism=Citrus clementina; type=EST; length=602bp
TTTTAACAGTTTCAATTACTCAGAAGAAGAAACTTACCCTTACTAGCCAA
CAACGTTTTCCAATTTTCCGATGCAACATTCCCACCAACATTCAACTTCA
CGCTCATTAAATGTCATTAGATTCCTGAACTATGAAACAAGTCCATTATT
TAAATGAACTTGGCATTCCCATGTGATAAAAATTTACTTAAAAAACAAAA
ATTTTCTCCTTATAATTCTTTGTGATTTTTGAAAAATGAAAATGGGATTA
AGAGAATTGACAATGGTGTTGATTTTGTGGGGTTCTTGCTGCTTGTTTGC
AGGTGGAAATGGGGTACTTGTGCTTCACTTTTATAAAAAGAGTTGCCCTA
GTGCAGAAATGCCAGTAAAAGAGGAGATGAAAAGAAATATGCTGAGTGAT
ATTTCTTCTGCTGCTGCCATTCTTAGACTGGATTTTCATGATTGTCAAGT
CGATGGTTGTGATGGATCAATTCTTCTCGGAAACTCAAACGGGATTACAA
CAGAAACATTATCGGACAAGAATTTCGGAATCCGGAAGGTTGATATTATC
AATGAGATAAAGAGTTCCCTTGAAACGCTTTGTCCTGAAACAGTTTCTTG
TG
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