FC920889

Overview
NameFC920889
Unique NameFC920889
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length563
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14502 contig Ccv1_Contig14502:94..656. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920889 vs. ExPASy Swiss-Prot
Match: SNAG_ARATH (Gamma-soluble NSF attachment protein OS=Arabidopsis thaliana GN=GSNAP PE=2 SV=1)

HSP 1 Score: 237.654 bits (605), Expect = 3.066e-62
Identity = 117/171 (68.42%), Postives = 136/171 (79.53%), Query Frame = 3
Query:   48 SSDPHKLMVKADKLTKLSLTRWSADWKSATQLYEQAANGFRVAKNIEQAKIAFEKASQGQEMLSSPCDAAKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPXXXXXXXXXXXXXXXVPEDAIQLYTDACIMLEEDDKEQMAFDVYRAATNVYIKLEKYADAATF 560
            SSDP K+M KADK+TKL+LTRWSADW+ AT+LYEQAANGFR +   E+AK+A EKAS+GQEM +SP DAAKHMESAAALA++L  W EVADFYRKASELY ECGR+QP                P+DAIQLYTDAC +LEED ++QMAFD+YRA  NVYIKLEK+ DAATF
Sbjct:    2 SSDPDKMMSKADKMTKLTLTRWSADWRGATELYEQAANGFRASNKYEKAKVALEKASKGQEMQASPWDAAKHMESAAALAQKLSIWNEVADFYRKASELYVECGRAQPASDALGKAARALEDVKPDDAIQLYTDACEILEEDGRDQMAFDLYRACANVYIKLEKFTDAATF 172          
BLAST of FC920889 vs. ExPASy Swiss-Prot
Match: SNAG_DICDI (Gamma-soluble NSF attachment protein OS=Dictyostelium discoideum GN=snpC PE=1 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 9.978e-21
Identity = 58/165 (35.15%), Postives = 86/165 (52.12%), Query Frame = 3
Query:   69 MVKADKLTKLSLTRWSADWKSATQLYEQAANGFRVAKNIEQAKIAFEKASQGQEMLSSPCDAAKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPXXXXXXXXXXXXXXXVPEDAIQLYTDACIMLEEDDKEQMAFDVYRAATNVYIKLEKYADAATFL 563
            M + DKL+K ++ RW ADW SA   YE+AAN FR AK  + AK  F + S  Q  +     AAK ME+A+A+AKEL   +E A+   ++ +LY   G S                      I+L TDAC + E DDK+  + D ++   ++ +K +KY +A   +
Sbjct:   17 MKEGDKLSKTNIFRWKADWDSAALAYEKAANAFRSAKIYDSAKYCFLRLSLCQTHMDVYYLAAKSMENASAMAKELKETQECANLLLESCKLYRTNGNSFQAADTMTKAAKLLEDIDLNQTIKLLTDACELFELDDKDHFSGDTFKQTISMLLKHKKYTEAVDLM 181          
BLAST of FC920889 vs. ExPASy Swiss-Prot
Match: SNAG_BOVIN (Gamma-soluble NSF attachment protein OS=Bos taurus GN=NAPG PE=1 SV=3)

HSP 1 Score: 72.4034 bits (176), Expect = 1.706e-12
Identity = 46/162 (28.40%), Postives = 72/162 (44.44%), Query Frame = 3
Query:   69 MVKADKLTKLSLTRWSADWKSATQLYEQAANGFRVAKNIEQAKIAFEKASQGQEMLSSPCDAAKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPXXXXXXXXXXXXXXXVPEDAIQLYTDACIMLEEDDKEQMAFDVYRAATNVYIKLEKYADAA 554
            + KA+K  K    +W  D+ SA   Y +AA  F+ AK  EQAK A  K +   E   +   AAK  E A  + KE+    E      KAS +Y E G                    PE A+QLY     + E +++ + A ++   A+ + ++  ++ +AA
Sbjct:   13 LAKAEKYLKTGFLKWKPDYDSAASEYGKAAVAFKNAKQFEQAKDACLKEAVAHENNRALFHAAKAYEQAGMMLKEMQKLPEAVQLIEKASMMYLENGTPDTAAMALERAGKLIENVDPEKAVQLYQQTANVFENEERLRQAVELLGKASRLLVRGRRFDEAA 174          
BLAST of FC920889 vs. ExPASy Swiss-Prot
Match: SNAG_MOUSE (Gamma-soluble NSF attachment protein OS=Mus musculus GN=Napg PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 3.800e-12
Identity = 45/162 (27.78%), Postives = 72/162 (44.44%), Query Frame = 3
Query:   69 MVKADKLTKLSLTRWSADWKSATQLYEQAANGFRVAKNIEQAKIAFEKASQGQEMLSSPCDAAKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPXXXXXXXXXXXXXXXVPEDAIQLYTDACIMLEEDDKEQMAFDVYRAATNVYIKLEKYADAA 554
            + KA+K  K    +W  D+ SA   Y +AA  F+ AK  EQAK A  + +   E   +   AAK  E A  + KE+    E      KAS +Y E G                    PE A+QLY     + E +++ + A ++   A+ + ++  ++ +AA
Sbjct:   13 LAKAEKYLKTGFLKWKPDYDSAASEYGKAAVAFKNAKQFEQAKDACLREAVAHENNRALFHAAKAYEQAGMMLKEMQKLPEAVQLIEKASMMYLENGTPDTAAMALERAGKLIENVDPEKAVQLYQQTANVFENEERLRQAVELLGKASRLLVRGRRFDEAA 174          
BLAST of FC920889 vs. ExPASy Swiss-Prot
Match: SNAG_HUMAN (Gamma-soluble NSF attachment protein OS=Homo sapiens GN=NAPG PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 3.800e-12
Identity = 45/162 (27.78%), Postives = 72/162 (44.44%), Query Frame = 3
Query:   69 MVKADKLTKLSLTRWSADWKSATQLYEQAANGFRVAKNIEQAKIAFEKASQGQEMLSSPCDAAKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPXXXXXXXXXXXXXXXVPEDAIQLYTDACIMLEEDDKEQMAFDVYRAATNVYIKLEKYADAA 554
            + KA+K  K    +W  D+ SA   Y +AA  F+ AK  EQAK A  + +   E   +   AAK  E A  + KE+    E      KAS +Y E G                    PE A+QLY     + E +++ + A ++   A+ + ++  ++ +AA
Sbjct:   13 LAKAEKYLKTGFLKWKPDYDSAASEYGKAAVAFKNAKQFEQAKDACLREAVAHENNRALFHAAKAYEQAGMMLKEMQKLPEAVQLIEKASMMYLENGTPDTAAMALERAGKLIENVDPEKAVQLYQQTANVFENEERLRQAVELLGKASRLLVRGRRFDEAA 174          
The following BLAST results are available for this feature:
BLAST of FC920889 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
SNAG_ARATH3.066e-6268.42Gamma-soluble NSF attachment protein OS=Arabidopsi... [more]
SNAG_DICDI9.978e-2135.15Gamma-soluble NSF attachment protein OS=Dictyostel... [more]
SNAG_BOVIN1.706e-1228.40Gamma-soluble NSF attachment protein OS=Bos taurus... [more]
SNAG_MOUSE3.800e-1227.78Gamma-soluble NSF attachment protein OS=Mus muscul... [more]
SNAG_HUMAN3.800e-1227.78Gamma-soluble NSF attachment protein OS=Homo sapie... [more]
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Properties
Property NameValue
Genbank descriptionC32014D02EF RVDevelop1 Citrus clementina cDNA clone C32014D02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920889 ID=FC920889; Name=FC920889; organism=Citrus clementina; type=EST; length=563bp
ATCTGAGAAACAGGTGGACCGTTGGTTCGGAGTGAGCTTTTACCCCGAGT
TCCGATCCTCACAAGTTGATGGTCAAAGCCGACAAATTAACAAAACTCAG
TCTTACCAGATGGAGTGCTGATTGGAAAAGTGCTACTCAATTGTATGAAC
AGGCTGCTAATGGTTTCAGGGTTGCCAAAAATATTGAGCAAGCAAAAATT
GCATTTGAGAAAGCTTCGCAAGGACAAGAGATGCTCTCCTCACCATGTGA
TGCGGCTAAGCATATGGAGTCTGCTGCTGCTTTAGCTAAGGAACTACATA
ATTGGAGGGAAGTTGCTGACTTTTATAGAAAAGCATCAGAGTTGTACAAT
GAATGTGGGAGATCACAACCTGCCTCAGATGCTCTAGCAAAGGCTGCTCG
TGCATTGGAAGATGCTGTGCCAGAGGATGCTATTCAACTCTATACTGATG
CATGCATAATGCTTGAAGAGGATGACAAGGAACAAATGGCCTTTGATGTA
TATCGTGCTGCCACTAATGTTTATATAAAGCTTGAGAAGTATGCTGATGC
TGCCACTTTTCTG
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