FC920893
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC920893 vs. ExPASy Swiss-Prot
Match: FEN1A_ORYSJ (Flap endonuclease 1a OS=Oryza sativa subsp. japonica GN=FEN-1a PE=2 SV=1) HSP 1 Score: 320.472 bits (820), Expect = 1.475e-90 Identity = 160/185 (86.49%), Postives = 173/185 (93.51%), Query Frame = 3 Query: 57 MGIKGLTKLLADNAPKAMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLT 611 MGIKGLTKLLADNAPKAMKEQKFESYFGR+IA+DASMSIYQFLIVVGRTG E LTNEAGEVTSHLQGMF RTIRLLEAG+KP+YVFDG+PPDLKKQELAKRYSKR DAT +L EAVE G+K+ IEKFSKRTVKVTKQHN++CKRLL+LMGVPVVEAP EAEA+CAALC + VYAVASEDMDSLT Sbjct: 1 MGIKGLTKLLADNAPKAMKEQKFESYFGRRIAVDASMSIYQFLIVVGRTGMETLTNEAGEVTSHLQGMFNRTIRLLEAGIKPVYVFDGKPPDLKKQELAKRYSKREDATKELTEAVEEGDKDAIEKFSKRTVKVTKQHNEECKRLLRLMGVPVVEAPCEAEAECAALCINDMVYAVASEDMDSLT 185 HSP 2 Score: 34.2686 bits (77), Expect = 1.475e-90 Identity = 14/14 (100.00%), Postives = 14/14 (100.00%), Query Frame = 2 Query: 611 FGAPRFLRHLMDPS 652 FGAPRFLRHLMDPS Sbjct: 186 FGAPRFLRHLMDPS 199
BLAST of FC920893 vs. ExPASy Swiss-Prot
Match: FEN1B_ORYSJ (Flap endonuclease 1b OS=Oryza sativa subsp. japonica GN=FEN-1b PE=2 SV=1) HSP 1 Score: 271.937 bits (694), Expect = 3.921e-73 Identity = 132/185 (71.35%), Postives = 162/185 (87.57%), Query Frame = 3 Query: 57 MGIKGLTKLLADNAPKAMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLT 611 MGIKGLTKLLA++AP A ++ E Y GR +AID S+SIYQFLIVVGR GTE+LTNEAGEVTSHLQGM RT+R+LEAG+KP++VFDG+PPD+KK+ELAKR KR +++DL A+E G+++ IEKFSKRTVKVTK+HN+DCKRLL LMGVPVV+AP EAEAQCAALC++ +V+A+ASEDMDSLT Sbjct: 1 MGIKGLTKLLAEHAPGAAVRRRVEDYRGRVVAIDTSLSIYQFLIVVGRKGTEVLTNEAGEVTSHLQGMLNRTVRILEAGIKPVFVFDGEPPDMKKKELAKRSLKRDGSSEDLNRAIEVGDEDLIEKFSKRTVKVTKKHNEDCKRLLSLMGVPVVQAPGEAEAQCAALCENHKVFAIASEDMDSLT 185 HSP 2 Score: 24.6386 bits (52), Expect = 3.921e-73 Identity = 11/14 (78.57%), Postives = 11/14 (78.57%), Query Frame = 2 Query: 611 FGAPRFLRHLMDPS 652 FGA RFLRHL D S Sbjct: 186 FGARRFLRHLTDLS 199
BLAST of FC920893 vs. ExPASy Swiss-Prot
Match: FEN1_HUMAN (Flap endonuclease 1 OS=Homo sapiens GN=FEN1 PE=1 SV=1) HSP 1 Score: 245.358 bits (625), Expect = 1.989e-64 Identity = 121/185 (65.41%), Postives = 149/185 (80.54%), Query Frame = 3 Query: 57 MGIKGLTKLLADNAPKAMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLT 611 MGI+GL KL+AD AP A++E +SYFGRK+AIDASMSIYQFLI V R G ++L NE GE TSHL GMF RTIR++E G+KP+YVFDG+PP LK ELAKR +RA+A L +A AG ++++EKF+KR VKVTKQHND+CK LL LMG+P ++APSEAEA CAAL K+G+VYA A+EDMD LT Sbjct: 1 MGIQGLAKLIADVAPSAIRENDIKSYFGRKVAIDASMSIYQFLIAV-RQGGDVLQNEEGETTSHLMGMFYRTIRMMENGIKPVYVFDGKPPQLKSGELAKRSERRAEAEKQLQQAQAAGAEQEVEKFTKRLVKVTKQHNDECKHLLSLMGIPYLDAPSEAEASCAALVKAGKVYAAATEDMDCLT 184
BLAST of FC920893 vs. ExPASy Swiss-Prot
Match: FEN1_BOVIN (Flap endonuclease 1 OS=Bos taurus GN=FEN1 PE=2 SV=1) HSP 1 Score: 245.358 bits (625), Expect = 1.989e-64 Identity = 122/185 (65.95%), Postives = 148/185 (80.00%), Query Frame = 3 Query: 57 MGIKGLTKLLADNAPKAMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLT 611 MGI+GL KL+AD AP A++E +SYFGRK+AIDASMSIYQFLI V R G ++L NE GE TSHL GMF RTIR++E G+KP+YVFDG+PP LK ELAKR +RA+A L EA AG + ++EKF+KR VKVTKQHND+CK LL LMG+P ++APSEAEA CAAL K+G+VYA A+EDMD LT Sbjct: 1 MGIQGLAKLIADVAPSAIRENDIKSYFGRKVAIDASMSIYQFLIAV-RQGGDVLQNEEGETTSHLMGMFYRTIRMMENGIKPVYVFDGKPPQLKSGELAKRSERRAEAEKQLQEAQAAGAEAEVEKFTKRLVKVTKQHNDECKHLLSLMGIPYLDAPSEAEASCAALVKAGKVYAAATEDMDCLT 184
BLAST of FC920893 vs. ExPASy Swiss-Prot
Match: FEN1B_XENLA (Flap endonuclease 1-B OS=Xenopus laevis GN=fen1-B PE=1 SV=1) HSP 1 Score: 241.506 bits (615), Expect = 2.871e-63 Identity = 122/185 (65.95%), Postives = 146/185 (78.92%), Query Frame = 3 Query: 57 MGIKGLTKLLADNAPKAMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLT 611 MGI GL KL+AD AP A+KE +SYFGRK+A+DASM IYQFLI V + G ML NE GE TSHL GMF RTIR+LE G+KP+YVFDG+PP +K ELAKR +RA+A L A EAG E+IEKF+KR VKVTKQHN++CK+LL LMG+P V+AP EAEA CAAL K+G+VYA A+EDMD+LT Sbjct: 1 MGIHGLAKLIADVAPAAIKEHDIKSYFGRKVAVDASMCIYQFLIAVRQDGN-MLQNEEGETTSHLMGMFYRTIRMLEHGIKPVYVFDGKPPQMKSGELAKRSERRAEAEKLLEAAEEAGEVENIEKFNKRLVKVTKQHNEECKKLLSLMGIPYVDAPCEAEATCAALVKAGKVYAAATEDMDALT 184
BLAST of FC920893 vs. ExPASy Swiss-Prot
Match: FEN1A_XENLA (Flap endonuclease 1-A OS=Xenopus laevis GN=fen1-A PE=1 SV=1) HSP 1 Score: 237.654 bits (605), Expect = 4.146e-62 Identity = 120/185 (64.86%), Postives = 145/185 (78.38%), Query Frame = 3 Query: 57 MGIKGLTKLLADNAPKAMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLT 611 MGI GL KL+AD AP A+KE +SYFGRK+A+DASM IYQFLI V + G L NE GE TSHL GMF RTIR++E G+KP+YVFDG+PP +K ELAKR +RA+A L A EAG E+IEKF+KR VKVTKQHN++CK+LL LMG+P V+AP EAEA CAAL K+G+VYA A+EDMD+LT Sbjct: 1 MGIHGLAKLIADVAPAAIKEHDIKSYFGRKVAVDASMCIYQFLIAVRQDGNT-LQNEEGETTSHLMGMFYRTIRMVEHGIKPVYVFDGKPPQMKSGELAKRSERRAEAEKLLEAAEEAGEVENIEKFTKRLVKVTKQHNEECKKLLTLMGIPYVDAPCEAEATCAALVKAGKVYAAATEDMDALT 184
BLAST of FC920893 vs. ExPASy Swiss-Prot
Match: FEN1_MOUSE (Flap endonuclease 1 OS=Mus musculus GN=Fen1 PE=1 SV=1) HSP 1 Score: 235.343 bits (599), Expect = 2.058e-61 Identity = 122/185 (65.95%), Postives = 147/185 (79.46%), Query Frame = 3 Query: 57 MGIKGLTKLLADNAPKAMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLT 611 MGI GL KL+AD AP A++E +SYFGRK+AIDASMSIYQFLI V R G ++L NE GE TS L GMF RTIR+ E G+KP+YVFDG+PP LK ELAKR +RA+A L +A EAG +E++EKF+KR VKVTKQHND+CK LL LMG+P ++APSEAEA CAAL K+G+VYA A+EDMD LT Sbjct: 1 MGIHGLAKLIADVAPSAIRENDIKSYFGRKVAIDASMSIYQFLIAV-RQGGDVLQNEEGETTS-LMGMFYRTIRM-ENGIKPVYVFDGKPPQLKSGELAKRSERRAEAEKQLQQAQEAGMEEEVEKFTKRLVKVTKQHNDECKHLLSLMGIPYLDAPSEAEASCAALAKAGKVYAAATEDMDCLT 182
BLAST of FC920893 vs. ExPASy Swiss-Prot
Match: RAD2_SCHPO (DNA repair protein rad2 OS=Schizosaccharomyces pombe GN=rad2 PE=1 SV=1) HSP 1 Score: 226.483 bits (576), Expect = 9.559e-59 Identity = 109/184 (59.24%), Postives = 142/184 (77.17%), Query Frame = 3 Query: 57 MGIKGLTKLLADNAPKAMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSL 608 MGIKGL ++L+++AP ++K ++YFGRK+AIDASMS+YQFLI V + L NE GE TSHL GMF RT+R+++ G+KP +VFDG+PP LK ELAKR ++ A +D E E G E +++F+KRTVKVT+QHND+ KRLL+LMG+P V AP EAEAQCAAL +SG+VYA ASEDMD+L Sbjct: 1 MGIKGLAQVLSEHAPASVKHNDIKNYFGRKVAIDASMSLYQFLIQVRSQDGQQLMNEQGETTSHLMGMFYRTLRIVDNGIKPCFVFDGKPPTLKSGELAKRVARHQKAREDQEETKEVGTAEMVDRFAKRTVKVTRQHNDEAKRLLELMGIPFVNAPCEAEAQCAALARSGKVYAAASEDMDTL 184
BLAST of FC920893 vs. ExPASy Swiss-Prot
Match: RAD27_YEAST (Structure-specific endonuclease RAD27 OS=Saccharomyces cerevisiae GN=RAD27 PE=1 SV=1) HSP 1 Score: 208.379 bits (529), Expect = 2.694e-53 Identity = 103/184 (55.98%), Postives = 136/184 (73.91%), Query Frame = 3 Query: 57 MGIKGLTKLLADNAPKAMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSL 608 MGIKGL +++++ P A+++ +S+FGRK+AIDASMS+YQFLI V + LTNEAGE TSHL GMF RT+R+++ G+KP YVFDG+PPDLK EL KR S+R + LAEA K K +R VKV+K+HN++ ++LL LMG+P + AP+EAEAQCA L K G+VYA ASEDMD+L Sbjct: 1 MGIKGLNAIISEHVPSAIRKSDIKSFFGRKVAIDASMSLYQFLIAVRQQDGGQLTNEAGETTSHLMGMFYRTLRMIDNGIKPCYVFDGKPPDLKSHELTKRSSRRVETEKKLAEATTELEK---MKQERRLVKVSKEHNEEAQKLLGLMGIPYIIAPTEAEAQCAELAKKGKVYAAASEDMDTL 181
BLAST of FC920893 vs. ExPASy Swiss-Prot
Match: FEN_PYRFU (Flap structure-specific endonuclease OS=Pyrococcus furiosus GN=fen PE=1 SV=1) HSP 1 Score: 168.318 bits (425), Expect = 3.089e-41 Identity = 82/166 (49.40%), Postives = 115/166 (69.28%), Query Frame = 3 Query: 111 KEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSL 608 KE + E+ +G+KIAIDA +IYQFL + + L + G +TSHL G+F RTI L+EAG+KP+YVFDG+PP+ KK+EL KR R +A + EA+E G E+ K+++R +V + +D K+LL+LMG+P+V+APSE EAQ A + G VYA AS+D DSL Sbjct: 12 KEIELENLYGKKIAIDALNAIYQFLSTIRQKDGTPLMDSKGRITSHLSGLFYRTINLMEAGIKPVYVFDGEPPEFKKKELEKRREAREEAEEKWREALEKGEIEEARKYAQRATRVNEMLIEDAKKLLELMGIPIVQAPSEGEAQAAYMAAKGSVYASASQDYDSL 177 The following BLAST results are available for this feature:
BLAST of FC920893 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 64
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Sequences
The
following sequences are available for this feature:
EST sequence >FC920893 ID=FC920893; Name=FC920893; organism=Citrus clementina; type=EST; length=654bpback to top |