FC920893

Overview
NameFC920893
Unique NameFC920893
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length654
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14210 contig Ccv1_Contig14210:1..655. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920893 vs. ExPASy Swiss-Prot
Match: FEN1A_ORYSJ (Flap endonuclease 1a OS=Oryza sativa subsp. japonica GN=FEN-1a PE=2 SV=1)

HSP 1 Score: 320.472 bits (820), Expect = 1.475e-90
Identity = 160/185 (86.49%), Postives = 173/185 (93.51%), Query Frame = 3
Query:   57 MGIKGLTKLLADNAPKAMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLT 611
            MGIKGLTKLLADNAPKAMKEQKFESYFGR+IA+DASMSIYQFLIVVGRTG E LTNEAGEVTSHLQGMF RTIRLLEAG+KP+YVFDG+PPDLKKQELAKRYSKR DAT +L EAVE G+K+ IEKFSKRTVKVTKQHN++CKRLL+LMGVPVVEAP EAEA+CAALC +  VYAVASEDMDSLT
Sbjct:    1 MGIKGLTKLLADNAPKAMKEQKFESYFGRRIAVDASMSIYQFLIVVGRTGMETLTNEAGEVTSHLQGMFNRTIRLLEAGIKPVYVFDGKPPDLKKQELAKRYSKREDATKELTEAVEEGDKDAIEKFSKRTVKVTKQHNEECKRLLRLMGVPVVEAPCEAEAECAALCINDMVYAVASEDMDSLT 185          

HSP 2 Score: 34.2686 bits (77), Expect = 1.475e-90
Identity = 14/14 (100.00%), Postives = 14/14 (100.00%), Query Frame = 2
Query:  611 FGAPRFLRHLMDPS 652
            FGAPRFLRHLMDPS
Sbjct:  186 FGAPRFLRHLMDPS 199          
BLAST of FC920893 vs. ExPASy Swiss-Prot
Match: FEN1B_ORYSJ (Flap endonuclease 1b OS=Oryza sativa subsp. japonica GN=FEN-1b PE=2 SV=1)

HSP 1 Score: 271.937 bits (694), Expect = 3.921e-73
Identity = 132/185 (71.35%), Postives = 162/185 (87.57%), Query Frame = 3
Query:   57 MGIKGLTKLLADNAPKAMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLT 611
            MGIKGLTKLLA++AP A   ++ E Y GR +AID S+SIYQFLIVVGR GTE+LTNEAGEVTSHLQGM  RT+R+LEAG+KP++VFDG+PPD+KK+ELAKR  KR  +++DL  A+E G+++ IEKFSKRTVKVTK+HN+DCKRLL LMGVPVV+AP EAEAQCAALC++ +V+A+ASEDMDSLT
Sbjct:    1 MGIKGLTKLLAEHAPGAAVRRRVEDYRGRVVAIDTSLSIYQFLIVVGRKGTEVLTNEAGEVTSHLQGMLNRTVRILEAGIKPVFVFDGEPPDMKKKELAKRSLKRDGSSEDLNRAIEVGDEDLIEKFSKRTVKVTKKHNEDCKRLLSLMGVPVVQAPGEAEAQCAALCENHKVFAIASEDMDSLT 185          

HSP 2 Score: 24.6386 bits (52), Expect = 3.921e-73
Identity = 11/14 (78.57%), Postives = 11/14 (78.57%), Query Frame = 2
Query:  611 FGAPRFLRHLMDPS 652
            FGA RFLRHL D S
Sbjct:  186 FGARRFLRHLTDLS 199          
BLAST of FC920893 vs. ExPASy Swiss-Prot
Match: FEN1_HUMAN (Flap endonuclease 1 OS=Homo sapiens GN=FEN1 PE=1 SV=1)

HSP 1 Score: 245.358 bits (625), Expect = 1.989e-64
Identity = 121/185 (65.41%), Postives = 149/185 (80.54%), Query Frame = 3
Query:   57 MGIKGLTKLLADNAPKAMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLT 611
            MGI+GL KL+AD AP A++E   +SYFGRK+AIDASMSIYQFLI V R G ++L NE GE TSHL GMF RTIR++E G+KP+YVFDG+PP LK  ELAKR  +RA+A   L +A  AG ++++EKF+KR VKVTKQHND+CK LL LMG+P ++APSEAEA CAAL K+G+VYA A+EDMD LT
Sbjct:    1 MGIQGLAKLIADVAPSAIRENDIKSYFGRKVAIDASMSIYQFLIAV-RQGGDVLQNEEGETTSHLMGMFYRTIRMMENGIKPVYVFDGKPPQLKSGELAKRSERRAEAEKQLQQAQAAGAEQEVEKFTKRLVKVTKQHNDECKHLLSLMGIPYLDAPSEAEASCAALVKAGKVYAAATEDMDCLT 184          
BLAST of FC920893 vs. ExPASy Swiss-Prot
Match: FEN1_BOVIN (Flap endonuclease 1 OS=Bos taurus GN=FEN1 PE=2 SV=1)

HSP 1 Score: 245.358 bits (625), Expect = 1.989e-64
Identity = 122/185 (65.95%), Postives = 148/185 (80.00%), Query Frame = 3
Query:   57 MGIKGLTKLLADNAPKAMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLT 611
            MGI+GL KL+AD AP A++E   +SYFGRK+AIDASMSIYQFLI V R G ++L NE GE TSHL GMF RTIR++E G+KP+YVFDG+PP LK  ELAKR  +RA+A   L EA  AG + ++EKF+KR VKVTKQHND+CK LL LMG+P ++APSEAEA CAAL K+G+VYA A+EDMD LT
Sbjct:    1 MGIQGLAKLIADVAPSAIRENDIKSYFGRKVAIDASMSIYQFLIAV-RQGGDVLQNEEGETTSHLMGMFYRTIRMMENGIKPVYVFDGKPPQLKSGELAKRSERRAEAEKQLQEAQAAGAEAEVEKFTKRLVKVTKQHNDECKHLLSLMGIPYLDAPSEAEASCAALVKAGKVYAAATEDMDCLT 184          
BLAST of FC920893 vs. ExPASy Swiss-Prot
Match: FEN1B_XENLA (Flap endonuclease 1-B OS=Xenopus laevis GN=fen1-B PE=1 SV=1)

HSP 1 Score: 241.506 bits (615), Expect = 2.871e-63
Identity = 122/185 (65.95%), Postives = 146/185 (78.92%), Query Frame = 3
Query:   57 MGIKGLTKLLADNAPKAMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLT 611
            MGI GL KL+AD AP A+KE   +SYFGRK+A+DASM IYQFLI V + G  ML NE GE TSHL GMF RTIR+LE G+KP+YVFDG+PP +K  ELAKR  +RA+A   L  A EAG  E+IEKF+KR VKVTKQHN++CK+LL LMG+P V+AP EAEA CAAL K+G+VYA A+EDMD+LT
Sbjct:    1 MGIHGLAKLIADVAPAAIKEHDIKSYFGRKVAVDASMCIYQFLIAVRQDGN-MLQNEEGETTSHLMGMFYRTIRMLEHGIKPVYVFDGKPPQMKSGELAKRSERRAEAEKLLEAAEEAGEVENIEKFNKRLVKVTKQHNEECKKLLSLMGIPYVDAPCEAEATCAALVKAGKVYAAATEDMDALT 184          
BLAST of FC920893 vs. ExPASy Swiss-Prot
Match: FEN1A_XENLA (Flap endonuclease 1-A OS=Xenopus laevis GN=fen1-A PE=1 SV=1)

HSP 1 Score: 237.654 bits (605), Expect = 4.146e-62
Identity = 120/185 (64.86%), Postives = 145/185 (78.38%), Query Frame = 3
Query:   57 MGIKGLTKLLADNAPKAMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLT 611
            MGI GL KL+AD AP A+KE   +SYFGRK+A+DASM IYQFLI V + G   L NE GE TSHL GMF RTIR++E G+KP+YVFDG+PP +K  ELAKR  +RA+A   L  A EAG  E+IEKF+KR VKVTKQHN++CK+LL LMG+P V+AP EAEA CAAL K+G+VYA A+EDMD+LT
Sbjct:    1 MGIHGLAKLIADVAPAAIKEHDIKSYFGRKVAVDASMCIYQFLIAVRQDGNT-LQNEEGETTSHLMGMFYRTIRMVEHGIKPVYVFDGKPPQMKSGELAKRSERRAEAEKLLEAAEEAGEVENIEKFTKRLVKVTKQHNEECKKLLTLMGIPYVDAPCEAEATCAALVKAGKVYAAATEDMDALT 184          
BLAST of FC920893 vs. ExPASy Swiss-Prot
Match: FEN1_MOUSE (Flap endonuclease 1 OS=Mus musculus GN=Fen1 PE=1 SV=1)

HSP 1 Score: 235.343 bits (599), Expect = 2.058e-61
Identity = 122/185 (65.95%), Postives = 147/185 (79.46%), Query Frame = 3
Query:   57 MGIKGLTKLLADNAPKAMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLT 611
            MGI GL KL+AD AP A++E   +SYFGRK+AIDASMSIYQFLI V R G ++L NE GE TS L GMF RTIR+ E G+KP+YVFDG+PP LK  ELAKR  +RA+A   L +A EAG +E++EKF+KR VKVTKQHND+CK LL LMG+P ++APSEAEA CAAL K+G+VYA A+EDMD LT
Sbjct:    1 MGIHGLAKLIADVAPSAIRENDIKSYFGRKVAIDASMSIYQFLIAV-RQGGDVLQNEEGETTS-LMGMFYRTIRM-ENGIKPVYVFDGKPPQLKSGELAKRSERRAEAEKQLQQAQEAGMEEEVEKFTKRLVKVTKQHNDECKHLLSLMGIPYLDAPSEAEASCAALAKAGKVYAAATEDMDCLT 182          
BLAST of FC920893 vs. ExPASy Swiss-Prot
Match: RAD2_SCHPO (DNA repair protein rad2 OS=Schizosaccharomyces pombe GN=rad2 PE=1 SV=1)

HSP 1 Score: 226.483 bits (576), Expect = 9.559e-59
Identity = 109/184 (59.24%), Postives = 142/184 (77.17%), Query Frame = 3
Query:   57 MGIKGLTKLLADNAPKAMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSL 608
            MGIKGL ++L+++AP ++K    ++YFGRK+AIDASMS+YQFLI V     + L NE GE TSHL GMF RT+R+++ G+KP +VFDG+PP LK  ELAKR ++   A +D  E  E G  E +++F+KRTVKVT+QHND+ KRLL+LMG+P V AP EAEAQCAAL +SG+VYA ASEDMD+L
Sbjct:    1 MGIKGLAQVLSEHAPASVKHNDIKNYFGRKVAIDASMSLYQFLIQVRSQDGQQLMNEQGETTSHLMGMFYRTLRIVDNGIKPCFVFDGKPPTLKSGELAKRVARHQKAREDQEETKEVGTAEMVDRFAKRTVKVTRQHNDEAKRLLELMGIPFVNAPCEAEAQCAALARSGKVYAAASEDMDTL 184          
BLAST of FC920893 vs. ExPASy Swiss-Prot
Match: RAD27_YEAST (Structure-specific endonuclease RAD27 OS=Saccharomyces cerevisiae GN=RAD27 PE=1 SV=1)

HSP 1 Score: 208.379 bits (529), Expect = 2.694e-53
Identity = 103/184 (55.98%), Postives = 136/184 (73.91%), Query Frame = 3
Query:   57 MGIKGLTKLLADNAPKAMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSL 608
            MGIKGL  +++++ P A+++   +S+FGRK+AIDASMS+YQFLI V +     LTNEAGE TSHL GMF RT+R+++ G+KP YVFDG+PPDLK  EL KR S+R +    LAEA     K    K  +R VKV+K+HN++ ++LL LMG+P + AP+EAEAQCA L K G+VYA ASEDMD+L
Sbjct:    1 MGIKGLNAIISEHVPSAIRKSDIKSFFGRKVAIDASMSLYQFLIAVRQQDGGQLTNEAGETTSHLMGMFYRTLRMIDNGIKPCYVFDGKPPDLKSHELTKRSSRRVETEKKLAEATTELEK---MKQERRLVKVSKEHNEEAQKLLGLMGIPYIIAPTEAEAQCAELAKKGKVYAAASEDMDTL 181          
BLAST of FC920893 vs. ExPASy Swiss-Prot
Match: FEN_PYRFU (Flap structure-specific endonuclease OS=Pyrococcus furiosus GN=fen PE=1 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 3.089e-41
Identity = 82/166 (49.40%), Postives = 115/166 (69.28%), Query Frame = 3
Query:  111 KEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSL 608
            KE + E+ +G+KIAIDA  +IYQFL  + +     L +  G +TSHL G+F RTI L+EAG+KP+YVFDG+PP+ KK+EL KR   R +A +   EA+E G  E+  K+++R  +V +   +D K+LL+LMG+P+V+APSE EAQ A +   G VYA AS+D DSL
Sbjct:   12 KEIELENLYGKKIAIDALNAIYQFLSTIRQKDGTPLMDSKGRITSHLSGLFYRTINLMEAGIKPVYVFDGEPPEFKKKELEKRREAREEAEEKWREALEKGEIEEARKYAQRATRVNEMLIEDAKKLLELMGIPIVQAPSEGEAQAAYMAAKGSVYASASQDYDSL 177          
The following BLAST results are available for this feature:
BLAST of FC920893 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 64
Match NameE-valueIdentityDescription
FEN1A_ORYSJ1.475e-9086.49Flap endonuclease 1a OS=Oryza sativa subsp. japoni... [more]
FEN1B_ORYSJ3.921e-7371.35Flap endonuclease 1b OS=Oryza sativa subsp. japoni... [more]
FEN1_HUMAN1.989e-6465.41Flap endonuclease 1 OS=Homo sapiens GN=FEN1 PE=1 S... [more]
FEN1_BOVIN1.989e-6465.95Flap endonuclease 1 OS=Bos taurus GN=FEN1 PE=2 SV=... [more]
FEN1B_XENLA2.871e-6365.95Flap endonuclease 1-B OS=Xenopus laevis GN=fen1-B ... [more]
FEN1A_XENLA4.146e-6264.86Flap endonuclease 1-A OS=Xenopus laevis GN=fen1-A ... [more]
FEN1_MOUSE2.058e-6165.95Flap endonuclease 1 OS=Mus musculus GN=Fen1 PE=1 S... [more]
RAD2_SCHPO9.559e-5959.24DNA repair protein rad2 OS=Schizosaccharomyces pom... [more]
RAD27_YEAST2.694e-5355.98Structure-specific endonuclease RAD27 OS=Saccharom... [more]
FEN_PYRFU3.089e-4149.40Flap structure-specific endonuclease OS=Pyrococcus... [more]

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Properties
Property NameValue
Genbank descriptionC32014D10EF RVDevelop1 Citrus clementina cDNA clone C32014D10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920893 ID=FC920893; Name=FC920893; organism=Citrus clementina; type=EST; length=654bp
TCTCCACATAAACCCTAAACAGAAAGCTTCGTACCCGTTCCCGTTAATTT
TATTAAATGGGTATAAAGGGTTTAACGAAGCTTCTAGCGGACAATGCACC
GAAAGCAATGAAAGAGCAGAAATTTGAGAGCTACTTCGGTCGCAAGATTG
CCATTGATGCTAGCATGAGCATTTACCAGTTTCTCATTGTGGTGGGCAGA
ACTGGGACTGAAATGTTGACTAATGAAGCTGGTGAAGTTACCAGTCATTT
ACAAGGCATGTTTACTCGCACAATCAGGCTCCTTGAAGCAGGAATGAAGC
CAATCTATGTTTTTGATGGGCAGCCTCCGGATTTGAAGAAACAAGAGCTG
GCCAAACGTTATTCGAAGAGGGCTGATGCTACTGATGATTTGGCTGAAGC
TGTGGAGGCTGGCAATAAGGAAGACATTGAGAAATTTAGTAAGCGAACTG
TAAAGGTGACAAAGCAGCACAATGATGACTGCAAAAGACTTCTAAAACTC
ATGGGAGTGCCTGTAGTTGAGGCTCCTTCTGAAGCAGAAGCCCAGTGTGC
TGCTCTTTGCAAATCAGGACAGGTTTATGCTGTGGCTTCTGAAGACATGG
ATTCCCTAACTTTGGTGCTCCTAGATTTCTTCGCCATTTGATGGATCCTA
GCTC
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