FC920895

Overview
NameFC920895
Unique NameFC920895
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length537
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC920895_ssr85 microsatellite FC920895_ssr85:85..94. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig14211 contig Ccv1_Contig14211:1..537. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920895 vs. ExPASy Swiss-Prot
Match: DI193_ARATH (Protein DEHYDRATION-INDUCED 19 homolog 3 OS=Arabidopsis thaliana GN=DI19-3 PE=1 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 5.227e-45
Identity = 79/103 (76.70%), Postives = 93/103 (90.29%), Query Frame = 2
Query:  227 MDADSWSARLSSASKRYQSALQSRSEMFMGFEEIDGDDDLREEFPCPFCSEYFDIVGLCCHIDDEHPVEAKNGVCPVCAMRVGVDMVAHITLQHGNIFKMQRK 535
            MD+DSWS RL+SA++RYQ A  SRS+ F+GFEEIDG+++ REEF CPFCS+YFDIV LCCHID++HP+EAKNGVCPVCA+RVGVDMVAHITLQH NIFKM RK
Sbjct:    1 MDSDSWSDRLASATRRYQLAFPSRSDTFLGFEEIDGEEEFREEFACPFCSDYFDIVSLCCHIDEDHPMEAKNGVCPVCAVRVGVDMVAHITLQHANIFKMHRK 103          
BLAST of FC920895 vs. ExPASy Swiss-Prot
Match: DI196_ARATH (Protein DEHYDRATION-INDUCED 19 homolog 6 OS=Arabidopsis thaliana GN=DI19-6 PE=1 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 2.685e-41
Identity = 71/103 (68.93%), Postives = 90/103 (87.38%), Query Frame = 2
Query:  227 MDADSWSARLSSASKRYQSALQSRSEMFMGFEEIDGDDDLREEFPCPFCSEYFDIVGLCCHIDDEHPVEAKNGVCPVCAMRVGVDMVAHITLQHGNIFKMQRK 535
            MD+DSWS RL+SAS+RYQ    SRS+ F+GFEEI+G+DD REE+ CPFCS+YFDIV LCCHID++HP++AKNGVCP+CA++V  DM+AHITLQH N+FK+ RK
Sbjct:    1 MDSDSWSDRLASASRRYQLDFLSRSDNFLGFEEIEGEDDFREEYACPFCSDYFDIVSLCCHIDEDHPMDAKNGVCPICAVKVSSDMIAHITLQHANMFKVTRK 103          
BLAST of FC920895 vs. ExPASy Swiss-Prot
Match: DI191_ARATH (Protein DEHYDRATION-INDUCED 19 OS=Arabidopsis thaliana GN=DI19-1 PE=1 SV=2)

HSP 1 Score: 154.066 bits (388), Expect = 4.012e-37
Identity = 65/94 (69.15%), Postives = 83/94 (88.30%), Query Frame = 2
Query:  254 LSSASKRYQSALQSRSEMFMGFEEIDGDDDLREEFPCPFCSEYFDIVGLCCHIDDEHPVEAKNGVCPVCAMRVGVDMVAHITLQHGNIFKMQRK 535
            + + SKR+ + L+SRSEM MGFEEIDGDDD +EEF CPFC+E +DI+GLCCHIDDEH +E+KN VCPVC+++VGVD+VAHITL HG++FK+QRK
Sbjct:    1 MDADSKRFLATLRSRSEMLMGFEEIDGDDDFQEEFACPFCAESYDIIGLCCHIDDEHTLESKNAVCPVCSLKVGVDIVAHITLHHGSLFKLQRK 94          
BLAST of FC920895 vs. ExPASy Swiss-Prot
Match: DI194_ARATH (Protein DEHYDRATION-INDUCED 19 homolog 4 OS=Arabidopsis thaliana GN=DI19-4 PE=1 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.130e-31
Identity = 61/95 (64.21%), Postives = 79/95 (83.16%), Query Frame = 2
Query:  257 SSASKRYQSALQSRSEMFMG--FEEIDGDDDLREEFPCPFCSEYFDIVGLCCHIDDEHPVEAKNGVCPVCAMRVGVDMVAHITLQHGNIFKMQRK 535
            SS+S+R     QSRS++++G  +E+++G+DDL+ EF CPFC+E FDIVGLCCHID+EHPVEAKNGVCPVC  RVG+D+V HIT QH N FK+QR+
Sbjct:   16 SSSSRR----CQSRSDLYLGGGYEDLEGEDDLKAEFICPFCAEDFDIVGLCCHIDEEHPVEAKNGVCPVCTKRVGLDIVGHITTQHANFFKVQRR 106          
BLAST of FC920895 vs. ExPASy Swiss-Prot
Match: DI197_ARATH (Protein DEHYDRATION-INDUCED 19 homolog 7 OS=Arabidopsis thaliana GN=DI19-7 PE=1 SV=2)

HSP 1 Score: 134.42 bits (337), Expect = 3.289e-31
Identity = 62/108 (57.41%), Postives = 83/108 (76.85%), Query Frame = 2
Query:  227 MDADSWSA-----RLSSASKRYQSALQSRSEMFMGFEEIDGDDDLREEFPCPFCSEYFDIVGLCCHIDDEHPVEAKNGVCPVCAMRVGVDMVAHITLQHGNIFKMQRK 535
            MD++SW         S +S+RYQS    RS++++G  +++G+DDL+ EF CPFC++ FDIVGLCCHID  HPVEAKNGVCPVC  +VG+D+V HIT QHGN+FK+QR+
Sbjct:    1 MDSNSWINCPPVFSSSPSSRRYQS----RSDLYLG--DVEGEDDLKAEFMCPFCADEFDIVGLCCHIDVNHPVEAKNGVCPVCTKKVGLDIVGHITTQHGNVFKVQRR 102          
BLAST of FC920895 vs. ExPASy Swiss-Prot
Match: DI192_ORYSJ (Protein DEHYDRATION-INDUCED 19 homolog 2 OS=Oryza sativa subsp. japonica GN=DI19-2 PE=2 SV=2)

HSP 1 Score: 121.709 bits (304), Expect = 2.206e-27
Identity = 58/113 (51.33%), Postives = 80/113 (70.80%), Query Frame = 2
Query:  227 MDA-DSWSARLSSASKRYQSA--LQSRSEMFMGFEEID--GDDDLR-----EEFPCPFCSEYFDIVGLCCHIDDEHPVEAKNGVCPVCAMRVGVDMVAHITLQHGNIFKMQRK 535
            MDA D+W    SS+S    +A  LQ+R +++MGF++ D  G +++      E + CPFC E FD V  CCH+DDEH VEAK+GVCP+CA RVGVD++ H+T+QHG+ FKMQR+
Sbjct:    1 MDAGDAWGRSSSSSSSAAAAARRLQARYDLYMGFDDADAAGVEEVEARGGGEAYNCPFCGEDFDFVAFCCHVDDEHAVEAKSGVCPICATRVGVDLIGHLTMQHGSYFKMQRR 113          
BLAST of FC920895 vs. ExPASy Swiss-Prot
Match: DI191_ORYSJ (Protein DEHYDRATION-INDUCED 19 OS=Oryza sativa subsp. japonica GN=DI19-1 PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 1.385e-21
Identity = 43/103 (41.75%), Postives = 68/103 (66.02%), Query Frame = 2
Query:  227 MDADSWSARLSSASKRYQSALQSRSEMFMGFEEIDGDDDLREEFPCPFCSEYFDIVGLCCHIDDEHPVEAKNGVCPVCAMRVGVDMVAHITLQHGNIFKMQRK 535
            MD++ W +RL++A + Y + L        G EE+D D+++R EF CP+C E  D+V LC H+++EHP E     CP+C+ ++  DM+ HIT+QHG +FK +R+
Sbjct:    1 MDSEHWISRLAAAKRFYAAQLGHADRA--GMEEVDMDEEVRPEFACPYCYEDHDVVSLCAHLEEEHPFEPHAAPCPICSDKIAKDMLNHITVQHGYLFKNRRR 101          
BLAST of FC920895 vs. ExPASy Swiss-Prot
Match: DI194_ORYSJ (Protein DEHYDRATION-INDUCED 19 homolog 4 OS=Oryza sativa subsp. japonica GN=DI19-4 PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 2.363e-21
Identity = 45/119 (37.82%), Postives = 73/119 (61.34%), Query Frame = 2
Query:  227 MDADSWSARLSSASKRYQ-----------------SALQSRSEMFMGFEEIDGDDDLREEFPCPFCSEYFDIVGLCCHIDDEHPVEAKNGVCPVCAMRVGVDMVAHITLQHGNIFKMQR 532
            MD+D W +RL +A ++Y                  +A  S  + + G+++++ +D++R +FPCP+C E  DI  LC H++DEHP E+K   CPVC+ R+  D++ HITLQH  +F++QR
Sbjct:    1 MDSDHWISRLMAAKRQYALQRAQNHHHATATATATAASHSHLDRY-GYDDVEPEDEVRPDFPCPYCYEDHDITSLCAHLEDEHPFESKVVACPVCSARISKDLLDHITLQHSYLFRLQR 118          
BLAST of FC920895 vs. ExPASy Swiss-Prot
Match: DI192_ARATH (Protein DEHYDRATION-INDUCED 19 homolog 2 OS=Arabidopsis thaliana GN=DI19-2 PE=1 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 1.531e-20
Identity = 47/106 (44.34%), Postives = 68/106 (64.15%), Query Frame = 2
Query:  227 MDADSWSARLSSASKRYQS--ALQSRSEMFMGFEEIDG-DDDLREEFPCPFCSEYFDIVGLCCHIDDEHPVEAKNGVCPVCAMRVGVDMVAHITLQHGNIFKMQRK 535
            M+ D W    S +S+ Y+S  A + +S  +   EE +  DDD+  E+PCPFC+  +D+V LC HID+EH  EA NG+CPVC+ RV + MV HIT  H ++ K ++K
Sbjct:    1 MEDDMWCVSSSGSSRSYRSETAAKYQSGPYQDLEEFEEVDDDIAVEYPCPFCASDYDLVELCHHIDEEHRHEANNGICPVCSKRVKMHMVDHITSHHRDVLKSEQK 106          
BLAST of FC920895 vs. ExPASy Swiss-Prot
Match: DI195_ARATH (Protein DEHYDRATION-INDUCED 19 homolog 5 OS=Arabidopsis thaliana GN=DI19-5 PE=1 SV=2)

HSP 1 Score: 92.0485 bits (227), Expect = 1.872e-18
Identity = 36/67 (53.73%), Postives = 52/67 (77.61%), Query Frame = 2
Query:  323 EIDGDDDLREEFPCPFCSEYFDIVGLCCHIDDEHPVEAKNGVCPVCAMRVGVDMVAHITLQHGNIFK 523
            E + DD++  ++PCPFCS+ +D+V LC HID+EH ++A NG+CPVC+ RV + MV HIT QH ++FK
Sbjct:   32 EFEDDDEMAVDYPCPFCSDDYDLVELCHHIDEEHQLDANNGICPVCSRRVKMHMVDHITTQHRDVFK 98          
The following BLAST results are available for this feature:
BLAST of FC920895 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
DI193_ARATH5.227e-4576.70Protein DEHYDRATION-INDUCED 19 homolog 3 OS=Arabid... [more]
DI196_ARATH2.685e-4168.93Protein DEHYDRATION-INDUCED 19 homolog 6 OS=Arabid... [more]
DI191_ARATH4.012e-3769.15Protein DEHYDRATION-INDUCED 19 OS=Arabidopsis thal... [more]
DI194_ARATH1.130e-3164.21Protein DEHYDRATION-INDUCED 19 homolog 4 OS=Arabid... [more]
DI197_ARATH3.289e-3157.41Protein DEHYDRATION-INDUCED 19 homolog 7 OS=Arabid... [more]
DI192_ORYSJ2.206e-2751.33Protein DEHYDRATION-INDUCED 19 homolog 2 OS=Oryza ... [more]
DI191_ORYSJ1.385e-2141.75Protein DEHYDRATION-INDUCED 19 OS=Oryza sativa sub... [more]
DI194_ORYSJ2.363e-2137.82Protein DEHYDRATION-INDUCED 19 homolog 4 OS=Oryza ... [more]
DI192_ARATH1.531e-2044.34Protein DEHYDRATION-INDUCED 19 homolog 2 OS=Arabid... [more]
DI195_ARATH1.872e-1853.73Protein DEHYDRATION-INDUCED 19 homolog 5 OS=Arabid... [more]

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Properties
Property NameValue
Genbank descriptionC32014E01EF RVDevelop1 Citrus clementina cDNA clone C32014E01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920895 ID=FC920895; Name=FC920895; organism=Citrus clementina; type=EST; length=537bp
AAATACCAGCACAACACCAGATAACATTTCTTCTTTCTCTTTCCCTCCCA
AACCGACCCGCCCGTCATTGATTTTCTCTCTCTATCTCTCTCTCCATCGA
ATAAATTTCTGGGTTTTGATCAAGATTGGAACTTGTATTTGAATTCAAGA
TCAAAGCTTTGAAAACCCCTTAAAAATTGTTCCCATTTTTTGTCCAAGCT
TAAAAAGGAGCTTCTTATACATAAATATGGATGCTGATTCATGGAGTGCC
CGTCTCTCATCAGCTTCAAAGAGATACCAATCGGCTCTGCAATCACGATC
TGAGATGTTCATGGGGTTTGAAGAAATTGATGGAGATGATGATCTAAGGG
AGGAATTTCCATGCCCATTCTGCTCGGAGTATTTTGATATTGTTGGCTTG
TGCTGCCACATAGATGATGAGCATCCTGTGGAGGCAAAGAATGGGGTTTG
TCCAGTTTGTGCAATGAGGGTGGGGGTGGATATGGTTGCCCACATAACCT
TGCAACATGGAAATATATTTAAGATGCAGCGCAAGAG
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