FC920897

Overview
NameFC920897
Unique NameFC920897
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length734
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920897 vs. ExPASy Swiss-Prot
Match: RH35_ARATH (DEAD-box ATP-dependent RNA helicase 35 OS=Arabidopsis thaliana GN=RH35 PE=2 SV=1)

HSP 1 Score: 343.584 bits (880), Expect = 2.512e-100
Identity = 172/188 (91.49%), Postives = 180/188 (95.74%), Query Frame = 3
Query:   66 GEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQKTPPPVLIFCENR 629
            GEGP  LIVCPSRELARQTYEVVEQF+ P+ +AGYP LR+LLCIGG+DMRSQLEVVKRGVHIVVATPGRLKDMLAKKKM+LD CRYLTLDEADRLVDLGFEDDIREVFDHFK+QRQTLLFSATMPTKIQ FARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQKT PPVLIFCEN+
Sbjct:  220 GEGPIGLIVCPSRELARQTYEVVEQFVAPLVEAGYPPLRSLLCIGGIDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMSLDACRYLTLDEADRLVDLGFEDDIREVFDHFKSQRQTLLFSATMPTKIQIFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQKTSPPVLIFCENK 407          

HSP 2 Score: 43.8986 bits (102), Expect = 2.512e-100
Identity = 19/24 (79.17%), Postives = 23/24 (95.83%), Query Frame = 1
Query:  661 LERIEAVAVHGGKDQEEREYAISS 732
            L+ +EAVA+HGGKDQE+REYAISS
Sbjct:  419 LKGVEAVAIHGGKDQEDREYAISS 442          
BLAST of FC920897 vs. ExPASy Swiss-Prot
Match: RH35A_ORYSJ (DEAD-box ATP-dependent RNA helicase 35A OS=Oryza sativa subsp. japonica GN=Os02g0150100 PE=2 SV=2)

HSP 1 Score: 347.436 bits (890), Expect = 7.276e-100
Identity = 164/190 (86.32%), Postives = 185/190 (97.37%), Query Frame = 3
Query:   60 VPGEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQKTPPPVLIFCENR 629
            VPGEGPF +I+CPSRELA+QTY+V+EQFL P+++AGYP++R LLCIGGVDMR+QL+VVK+GVHIVVATPGRLKD+LAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMP KIQNFA+SALVKPV VNVGRAGAANLDVIQEVEYVK++A+I+YLLECLQKTPPPVL+FCEN+
Sbjct:  254 VPGEGPFGMIICPSRELAKQTYDVIEQFLVPLKEAGYPEIRPLLCIGGVDMRAQLDVVKKGVHIVVATPGRLKDLLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPKKIQNFAKSALVKPVIVNVGRAGAANLDVIQEVEYVKEDARIIYLLECLQKTPPPVLVFCENK 443          

HSP 2 Score: 38.5058 bits (88), Expect = 7.276e-100
Identity = 17/22 (77.27%), Postives = 20/22 (90.91%), Query Frame = 1
Query:  661 LERIEAVAVHGGKDQEEREYAI 726
            L+ +EAVA+HGGKDQEERE AI
Sbjct:  455 LKGVEAVAIHGGKDQEERENAI 476          
BLAST of FC920897 vs. ExPASy Swiss-Prot
Match: RH35B_ORYSJ (DEAD-box ATP-dependent RNA helicase 35B OS=Oryza sativa subsp. japonica GN=Os06g0697200 PE=3 SV=1)

HSP 1 Score: 343.969 bits (881), Expect = 1.138e-97
Identity = 164/190 (86.32%), Postives = 183/190 (96.32%), Query Frame = 3
Query:   60 VPGEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQKTPPPVLIFCENR 629
            VPGEGPF LIVCPSRELARQT+EV+E FL P+ +AGYP++R LLCIGGVDMR+Q+EVVK+GVHIVVATPGRLKD+L+KKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMP KIQNFA+SALVKP+ VNVGRAGAANLDVIQEVEYVK+EA+I+YLLECLQKTPPPVL+FCE++
Sbjct:  245 VPGEGPFGLIVCPSRELARQTHEVIEMFLAPLMEAGYPEIRPLLCIGGVDMRTQMEVVKKGVHIVVATPGRLKDLLSKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPEKIQNFAKSALVKPIIVNVGRAGAANLDVIQEVEYVKEEARIIYLLECLQKTPPPVLVFCEHK 434          

HSP 2 Score: 34.6538 bits (78), Expect = 1.138e-97
Identity = 15/24 (62.50%), Postives = 19/24 (79.17%), Query Frame = 1
Query:  661 LERIEAVAVHGGKDQEEREYAISS 732
            L+ +EAVA+HGGKD EER+ A  S
Sbjct:  446 LKGVEAVAIHGGKDDEERKDAFKS 469          
BLAST of FC920897 vs. ExPASy Swiss-Prot
Match: RH43_ARATH (Putative DEAD-box ATP-dependent RNA helicase 43 OS=Arabidopsis thaliana GN=RH43 PE=2 SV=1)

HSP 1 Score: 323.168 bits (827), Expect = 2.132e-93
Identity = 160/188 (85.11%), Postives = 174/188 (92.55%), Query Frame = 3
Query:   66 GEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQKTPPPVLIFCENR 629
            GEGP  L++CPSRELA+QTY+VVEQF+  + + GYP LR+LLCIGGVDMRSQL+VVK+GVHIVVATPGRLKD+LAKKKM+LD CR LTLDEADRLVDLGFEDDIR VFDHFK+QRQTLLFSATMP KIQ FA SALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQKT PPVLIFCEN+
Sbjct:  171 GEGPIALVICPSRELAKQTYDVVEQFVASLVEDGYPRLRSLLCIGGVDMRSQLDVVKKGVHIVVATPGRLKDILAKKKMSLDACRLLTLDEADRLVDLGFEDDIRHVFDHFKSQRQTLLFSATMPAKIQIFATSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQKTTPPVLIFCENK 358          

HSP 2 Score: 41.2022 bits (95), Expect = 2.132e-93
Identity = 17/23 (73.91%), Postives = 22/23 (95.65%), Query Frame = 1
Query:  661 LERIEAVAVHGGKDQEEREYAIS 729
            L+ +EAVA+HGGKDQE+R+YAIS
Sbjct:  370 LKGVEAVAIHGGKDQEDRDYAIS 392          
BLAST of FC920897 vs. ExPASy Swiss-Prot
Match: DDX41_DICDI (Probable ATP-dependent RNA helicase ddx41 OS=Dictyostelium discoideum GN=ddx41 PE=1 SV=1)

HSP 1 Score: 278.87 bits (712), Expect = 3.775e-79
Identity = 137/191 (71.73%), Postives = 160/191 (83.77%), Query Frame = 3
Query:   60 VPGEGPFCLIVCPSRELARQTYEVVEQFLTPM-RDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQKTPPPVLIFCENR 629
            + GEGPF LI+CPSRELARQTY++V  F   + ++ G+P LRTLL IGG+D+R Q  + K+GVH+++ATPGRL D+L KKK+N   C+YL LDEADRL+DLGFEDDIR V D+F  QRQTLLFSATMP KIQ FARSALV PV VNVGRAGAANL+V QEVE+VK EAKIVYLLECLQKTPPPVLIFCEN+
Sbjct:  294 IQGEGPFGLILCPSRELARQTYDLVNSFTNALHKNGGHPQLRTLLAIGGIDLREQEHIFKKGVHMIIATPGRLLDLLNKKKINFKLCKYLGLDEADRLIDLGFEDDIRSVLDNFTNQRQTLLFSATMPKKIQEFARSALVLPVEVNVGRAGAANLNVTQEVEFVKPEAKIVYLLECLQKTPPPVLIFCENK 484          

HSP 2 Score: 32.7278 bits (73), Expect = 3.775e-79
Identity = 13/24 (54.17%), Postives = 20/24 (83.33%), Query Frame = 1
Query:  661 LERIEAVAVHGGKDQEEREYAISS 732
            L+++EAV++HG K Q+ERE AI +
Sbjct:  496 LKQVEAVSIHGDKSQDERESAIKA 519          

HSP 3 Score: 26.5646 bits (57), Expect = 3.775e-79
Identity = 11/12 (91.67%), Postives = 12/12 (100.00%), Query Frame = 2
Query:  632 DVDDIHEYLLLK 667
            DVDDI+EYLLLK
Sbjct:  486 DVDDIYEYLLLK 497          
BLAST of FC920897 vs. ExPASy Swiss-Prot
Match: DDX41_MOUSE (Probable ATP-dependent RNA helicase DDX41 OS=Mus musculus GN=Ddx41 PE=1 SV=1)

HSP 1 Score: 270.396 bits (690), Expect = 3.351e-76
Identity = 128/187 (68.45%), Postives = 159/187 (85.03%), Query Frame = 3
Query:   69 EGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQKTPPPVLIFCENR 629
            EGP+ LI+CPSRELARQT+ ++E +   +++   P LR  LCIGG+ ++ Q+E ++ GVH++VATPGRL D+L KK ++LD CRYL LDEADR++D+GFE DIR +F +FK QRQTLLFSATMP KIQNFA+SALVKPVT+NVGRAGAA+LDVIQEVEYVK+EAK+VYLLECLQKTPPPVLIF E +
Sbjct:  256 EGPYGLIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIGGMSVKEQMETIRHGVHMMVATPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDIRTIFSYFKGQRQTLLFSATMPKKIQNFAKSALVKPVTINVGRAGAASLDVIQEVEYVKEEAKMVYLLECLQKTPPPVLIFAEKK 442          

HSP 2 Score: 36.5798 bits (83), Expect = 3.351e-76
Identity = 16/24 (66.67%), Postives = 20/24 (83.33%), Query Frame = 1
Query:  661 LERIEAVAVHGGKDQEEREYAISS 732
            L+ +EAVA+HGGKDQEER  AI +
Sbjct:  454 LKGVEAVAIHGGKDQEERTKAIEA 477          
BLAST of FC920897 vs. ExPASy Swiss-Prot
Match: DDX41_HUMAN (Probable ATP-dependent RNA helicase DDX41 OS=Homo sapiens GN=DDX41 PE=1 SV=2)

HSP 1 Score: 270.396 bits (690), Expect = 3.351e-76
Identity = 128/187 (68.45%), Postives = 159/187 (85.03%), Query Frame = 3
Query:   69 EGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQKTPPPVLIFCENR 629
            EGP+ LI+CPSRELARQT+ ++E +   +++   P LR  LCIGG+ ++ Q+E ++ GVH++VATPGRL D+L KK ++LD CRYL LDEADR++D+GFE DIR +F +FK QRQTLLFSATMP KIQNFA+SALVKPVT+NVGRAGAA+LDVIQEVEYVK+EAK+VYLLECLQKTPPPVLIF E +
Sbjct:  256 EGPYGLIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIGGMSVKEQMETIRHGVHMMVATPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDIRTIFSYFKGQRQTLLFSATMPKKIQNFAKSALVKPVTINVGRAGAASLDVIQEVEYVKEEAKMVYLLECLQKTPPPVLIFAEKK 442          

HSP 2 Score: 36.5798 bits (83), Expect = 3.351e-76
Identity = 16/24 (66.67%), Postives = 20/24 (83.33%), Query Frame = 1
Query:  661 LERIEAVAVHGGKDQEEREYAISS 732
            L+ +EAVA+HGGKDQEER  AI +
Sbjct:  454 LKGVEAVAIHGGKDQEERTKAIEA 477          
BLAST of FC920897 vs. ExPASy Swiss-Prot
Match: DDX41_DROME (ATP-dependent RNA helicase abstrakt OS=Drosophila melanogaster GN=abs PE=1 SV=1)

HSP 1 Score: 264.233 bits (674), Expect = 2.349e-74
Identity = 123/187 (65.78%), Postives = 157/187 (83.96%), Query Frame = 3
Query:   69 EGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQKTPPPVLIFCENR 629
            EGP+ LI+CPSRELA+QT+E+++ +   ++  G P++R+ L +GG+ +   L+V+ RGVHIVVATPGRL DML KK + LD CRYL +DEADR++D+GFE+D+R +F  FK QRQTLLFSATMP KIQNFARSALVKPVT+NVGRAGAA+++V Q+VEYVKQEAK+VYLL+CLQKT PPVLIF E +
Sbjct:  252 EGPYGLIICPSRELAKQTHEIIQHYSKHLQACGMPEIRSCLAMGGLPVSEALDVISRGVHIVVATPGRLMDMLDKKILTLDMCRYLCMDEADRMIDMGFEEDVRTIFSFFKGQRQTLLFSATMPKKIQNFARSALVKPVTINVGRAGAASMNVTQQVEYVKQEAKVVYLLDCLQKTAPPVLIFAEKK 438          

HSP 2 Score: 36.5798 bits (83), Expect = 2.349e-74
Identity = 15/24 (62.50%), Postives = 20/24 (83.33%), Query Frame = 1
Query:  661 LERIEAVAVHGGKDQEEREYAISS 732
            L+ +EAVA+HGGKDQEER  A+ +
Sbjct:  450 LKGVEAVAIHGGKDQEERSRAVDA 473          
BLAST of FC920897 vs. ExPASy Swiss-Prot
Match: RH24_ORYSJ (DEAD-box ATP-dependent RNA helicase 24 OS=Oryza sativa subsp. japonica GN=Os03g0308500 PE=2 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 5.490e-32
Identity = 77/174 (44.25%), Postives = 102/174 (58.62%), Query Frame = 3
Query:   69 EGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEA-KIVYLLECL 587
            EGP  ++  P+RELA Q Y   ++F  P       +LR     GGV    Q + +K G  IV+ATPGRL D+L  K + +    YL LDEADR+ DLGFE  IR +    +  RQTLLFSATMP K++  AR  L  P+ V VG+ G+AN D+ Q V  +  +A K+ +LLE L
Sbjct:  291 EGPIGVVCAPTRELAHQIYLEAKKFAKPY------NLRVAAVYGGVSKFDQFKELKAGCEIVIATPGRLIDLLKMKALKMFRATYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPYKVERLAREILTDPIRVTVGQVGSANEDIKQVVNVLPSDAEKMPWLLEKL 458          
BLAST of FC920897 vs. ExPASy Swiss-Prot
Match: PRP28_CRYNE (Pre-mRNA-splicing ATP-dependent RNA helicase PRP28 OS=Cryptococcus neoformans GN=PRP28 PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.529e-31
Identity = 78/211 (36.97%), Postives = 116/211 (54.98%), Query Frame = 3
Query:   72 GPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQ---------------------RQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYV----KQEAKIVYLLECLQKTPPPVLIFCENR 629
            GP+ LI+ P+RELA+Q      +F  P+   GY   + +  +GG  +  Q   ++ G  I++ATPGRLKDM+ K  + +  CRY+ +DEADR+VDLGFE D+  + D   A                      R T LFSATMP  ++  AR  L+KP TV +G AG A   V Q VE+V    K++A+++ +L  +   PPP+++F   +
Sbjct:  391 GPYALIMAPTRELAQQIETETRRFALPL---GY---KCVSIVGGRSVEEQQFALRDGAEIIIATPGRLKDMVDKSILVMSQCRYVVMDEADRMVDLGFEVDLNFILDSMPATFVKPDDSVALQPTKEGEWQGWRVTTLFSATMPPAVERLARKYLIKPATVVIGNAGEAVDTVEQRVEFVHGDEKKKARLIEILRTI-GLPPPIIVFVNQK 594          

HSP 2 Score: 24.6386 bits (52), Expect = 1.529e-31
Identity = 9/21 (42.86%), Postives = 14/21 (66.67%), Query Frame = 1
Query:  670 IEAVAVHGGKDQEEREYAISS 732
            +  V +H GK QE+RE A+ +
Sbjct:  609 MSGVTLHSGKSQEQREAALQA 629          
The following BLAST results are available for this feature:
BLAST of FC920897 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RH35_ARATH2.512e-10091.49DEAD-box ATP-dependent RNA helicase 35 OS=Arabidop... [more]
RH35A_ORYSJ7.276e-10086.32DEAD-box ATP-dependent RNA helicase 35A OS=Oryza s... [more]
RH35B_ORYSJ1.138e-9786.32DEAD-box ATP-dependent RNA helicase 35B OS=Oryza s... [more]
RH43_ARATH2.132e-9385.11Putative DEAD-box ATP-dependent RNA helicase 43 OS... [more]
DDX41_DICDI3.775e-7971.73Probable ATP-dependent RNA helicase ddx41 OS=Dicty... [more]
DDX41_MOUSE3.351e-7668.45Probable ATP-dependent RNA helicase DDX41 OS=Mus m... [more]
DDX41_HUMAN3.351e-7668.45Probable ATP-dependent RNA helicase DDX41 OS=Homo ... [more]
DDX41_DROME2.349e-7465.78ATP-dependent RNA helicase abstrakt OS=Drosophila ... [more]
RH24_ORYSJ5.490e-3244.25DEAD-box ATP-dependent RNA helicase 24 OS=Oryza sa... [more]
PRP28_CRYNE1.529e-3136.97Pre-mRNA-splicing ATP-dependent RNA helicase PRP28... [more]

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Properties
Property NameValue
Genbank descriptionC32014E04EF RVDevelop1 Citrus clementina cDNA clone C32014E04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920897 ID=FC920897; Name=FC920897; organism=Citrus clementina; type=EST; length=734bp
TGGTGTTTGTATTTCCAATGATCATGATAGCGATGCATGAGGAGATGATG
ATGCCTATTGTTCCTGGAGAGGGTCCATTTTGTTTAATTGTATGTCCATC
CAGAGAGCTTGCGAGGCAGACGTATGAGGTTGTAGAGCAGTTTTTGACGC
CAATGAGGGATGCAGGGTACCCAGACTTAAGGACGTTGCTTTGTATTGGT
GGAGTGGATATGCGGTCTCAGTTGGAGGTTGTAAAGAGGGGTGTACACAT
CGTTGTTGCAACTCCTGGGAGGTTGAAGGACATGCTGGCAAAGAAAAAAA
TGAACCTGGATAATTGCAGATATTTAACTTTGGATGAGGCAGATAGATTG
GTGGATTTGGGATTTGAAGACGATATACGGGAAGTATTTGATCACTTCAA
AGCTCAACGACAGACTCTTTTGTTCTCTGCTACCATGCCAACAAAAATCC
AGAACTTTGCTAGAAGTGCTTTGGTAAAGCCTGTTACTGTTAATGTGGGA
AGAGCTGGAGCAGCAAATCTAGATGTGATTCAGGAAGTGGAGTATGTGAA
GCAAGAGGCAAAGATAGTGTATCTACTTGAATGCCTACAAAAGACACCAC
CTCCCGTTTTGATATTTTGTGAGAACAGGCTGATGTTGACGACATTCACG
AATATCTACTCTTGAAAGGATTGAGGCAGTGGCCGTACATGGAGGGAAAG
ATCAGGAAGAGAGAGAATATGCCATTTCATCCTT
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