FC920901

Overview
NameFC920901
Unique NameFC920901
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length491
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920901 vs. ExPASy Swiss-Prot
Match: ACOT9_MOUSE (Acyl-coenzyme A thioesterase 9, mitochondrial OS=Mus musculus GN=Acot9 PE=1 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 9.712e-18
Identity = 56/168 (33.33%), Postives = 86/168 (51.19%), Query Frame = 3
Query:    9 VNRLSPQTEREKSLFEEAEARSKLRKR-------KTGGDSPELDNGEVNRLEALLAEGRVICDMPALADRNSILLRDTRLENALICQPQQRNIHGRIFGGFLMLRAFELAFSTAYAFAGLMPCFLEVDHVDFLRPVDVGDFLRFKSCVLYTELENPDQPLNYIEVVAH 491
            VN L P+ + E+ LF++ E     R         K    S E     ++ L     + + I     +    ++ + DT+L++  IC PQ+RN+  RIFGGFLM +A+ELA++TA +F G  P  + VD + F +PV+VG  L   S V +T+        NYI+V  H
Sbjct:  216 VNPLIPENKEEEELFKQGELNKSRRIAFSTSSLLKVAPSSEE--RNIIHELFLTTLDPKTISFQSRILPPKAVWMEDTKLKSLDICHPQERNVFNRIFGGFLMRKAYELAWATACSFGGSRPYVVTVDDIMFQKPVEVGSLLFLSSQVCFTQ-------DNYIQVRVH 374          
BLAST of FC920901 vs. ExPASy Swiss-Prot
Match: ACO10_MOUSE (Acyl-coenzyme A thioesterase 10, mitochondrial OS=Mus musculus GN=Acot10 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 2.164e-17
Identity = 56/168 (33.33%), Postives = 85/168 (50.60%), Query Frame = 3
Query:    9 VNRLSPQTEREKSLFEEAEARSKLRKR-------KTGGDSPELDNGEVNRLEALLAEGRVICDMPALADRNSILLRDTRLENALICQPQQRNIHGRIFGGFLMLRAFELAFSTAYAFAGLMPCFLEVDHVDFLRPVDVGDFLRFKSCVLYTELENPDQPLNYIEVVAH 491
            VN L P+ + E+ LF + E     R         K    S E     ++ L     + + I     +    ++ + DT+L++  IC PQ+RN+  RIFGGFLM +A+ELA++TA +F G  P  + VD + F +PV+VG  L   S V +T+        NYI+V  H
Sbjct:  216 VNPLIPENKEEEELFTQGELNKSRRIAFSTSSLLKVAPSSEE--RNIIHELFLSTLDPKTISFQSRILPPKAVWMEDTKLKSLDICHPQERNVFNRIFGGFLMRKAYELAWATACSFGGSRPYVVTVDDIMFQKPVEVGSLLFLSSQVCFTQ-------GNYIQVRVH 374          
BLAST of FC920901 vs. ExPASy Swiss-Prot
Match: ACOT9_HUMAN (Acyl-coenzyme A thioesterase 9, mitochondrial OS=Homo sapiens GN=ACOT9 PE=1 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 4.820e-17
Identity = 54/169 (31.95%), Postives = 88/169 (52.07%), Query Frame = 3
Query:    9 VNRLSPQTEREKSLFEEAEARSKLRKRKTGGDSPEL--------DNGEVNRLEALLAEGRVICDMPALADRNSILLRDTRLENALICQPQQRNIHGRIFGGFLMLRAFELAFSTAYAFAGLMPCFLEVDHVDFLRPVDVGDFLRFKSCVLYTELENPDQPLNYIEVVAH 491
            VN L P++  E+ LF + E     + R+    S  L        +   ++ +     + + I     +   N++ + +++L++  IC PQ+RNI  RIFGGFLM +A+ELA++TA +F G  P  + VD + F +PV+VG  L   S V +T+        NYI+V  H
Sbjct:  216 VNPLIPESPEEEELFRQGELN---KGRRIAFSSTSLLKMAPSAEERTTIHEMFLSTLDPKTISFRSRVLPSNAVWMENSKLKSLEICHPQERNIFNRIFGGFLMRKAYELAWATACSFGGSRPFVVAVDDIMFQKPVEVGSLLFLSSQVCFTQ-------NNYIQVRVH 374          
BLAST of FC920901 vs. ExPASy Swiss-Prot
Match: ACOT9_BOVIN (Acyl-coenzyme A thioesterase 9, mitochondrial OS=Bos taurus GN=ACOT9 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.551e-15
Identity = 54/171 (31.58%), Postives = 87/171 (50.88%), Query Frame = 3
Query:    9 VNRLSPQTEREKSLFEEAE----------ARSKLRKRKTGGDSPELDNGEVNRLEALLAEGRVICDMPALADRNSILLRDTRLENALICQPQQRNIHGRIFGGFLMLRAFELAFSTAYAFAGLMPCFLEVDHVDFLRPVDVGDFLRFKSCVLYTELENPDQPLNYIEVVAH 491
            VN L  ++  E+ LF++ E          + S L+   T  +   +    +N L+      + I     +   NS+ + +++L++  IC PQ+RNI  RIFGGFLM +A+EL ++TA  F G  P  + VD + F +PV+VG  L   + V +T+        NYI+V  H
Sbjct:  214 VNPLILESPEEEELFQQGELNKGRRVAFSSTSLLKMAPTAEERTTIHEMFLNTLDP-----KTISFRSRVLPANSVWMENSKLKSLDICHPQERNIFNRIFGGFLMRKAYELGWATACNFGGSRPFIVAVDDIMFQKPVEVGSLLFLSAQVCFTQ-------GNYIQVRVH 372          
The following BLAST results are available for this feature:
BLAST of FC920901 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
ACOT9_MOUSE9.712e-1833.33Acyl-coenzyme A thioesterase 9, mitochondrial OS=M... [more]
ACO10_MOUSE2.164e-1733.33Acyl-coenzyme A thioesterase 10, mitochondrial OS=... [more]
ACOT9_HUMAN4.820e-1731.95Acyl-coenzyme A thioesterase 9, mitochondrial OS=H... [more]
ACOT9_BOVIN1.551e-1531.58Acyl-coenzyme A thioesterase 9, mitochondrial OS=B... [more]
back to top
Properties
Property NameValue
Genbank descriptionC32014E09EF RVDevelop1 Citrus clementina cDNA clone C32014E09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920901 ID=FC920901; Name=FC920901; organism=Citrus clementina; type=EST; length=491bp
CTGCTCCGGTGAACCGGCTATCACCACAGACTGAACGCGAGAAGTCTCTT
TTTGAAGAAGCTGAAGCTAGAAGCAAACTGAGGAAAAGGAAAACAGGAGG
AGATAGCCCGGAACTTGACAATGGGGAGGTGAATAGACTCGAGGCATTGT
TGGCAGAGGGTCGGGTCATCTGTGACATGCCAGCCTTGGCTGACAGAAAC
AGCATTCTTCTAAGAGATACTCGACTTGAAAATGCTTTGATTTGTCAGCC
ACAGCAAAGAAACATCCATGGTCGAATCTTTGGGGGTTTTTTAATGCTCC
GAGCATTTGAATTAGCTTTTTCAACTGCTTATGCCTTTGCTGGACTGATG
CCTTGTTTTCTTGAAGTTGACCATGTTGATTTTCTAAGACCTGTGGACGT
TGGAGACTTTTTGCGTTTCAAGTCTTGTGTTCTCTACACAGAACTTGAGA
ATCCTGATCAGCCTCTAAATTACATTGAAGTTGTTGCTCAT
back to top