FC920910

Overview
NameFC920910
Unique NameFC920910
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length675
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig8398 contig Ccv1_Contig8398:230..904. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920910 vs. ExPASy Swiss-Prot
Match: MINP1_MOUSE (Multiple inositol polyphosphate phosphatase 1 OS=Mus musculus GN=Minpp1 PE=1 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 1.682e-13
Identity = 52/166 (31.33%), Postives = 84/166 (50.60%), Query Frame = 2
Query:  149 PSEIPDGCTPIHLNLVARHGTRAPTKKRMRELERLADHLEVLIREAKEKGSSLQKVPGWLQGWKSPWQGKLKGGELISKGEDELYDLGIRIREKYPDLFSEEYHPDVYPIKATQVPRASASAVAFGMGLFNERGTLGPGRHRAFAVTSESRASDIKLRFHDCCDNY 646
            P  +   CTP+ L  + RHGTR PT K++R+L++L   L+   RE+++ GS   +V   L  W   W G    G+L+ KG  ++  L +R+   +PDLFS E +  +  I +++  R   S+ AF  GL+       P    +       R +D  +RF D C+ +
Sbjct:   71 PELLAGTCTPVQLVALIRHGTRYPTTKQIRKLKQLQGLLQT--RESRDGGS---QVAAALAEWPL-WYGDWMDGQLVEKGRQDMRQLALRLAALFPDLFSRENYDRLRLITSSK-HRCVDSSAAFLQGLWQHYHPGLPPPDVSDMECDPPRINDKLMRFFDHCEKF 229          
BLAST of FC920910 vs. ExPASy Swiss-Prot
Match: MINP1_RAT (Multiple inositol polyphosphate phosphatase 1 OS=Rattus norvegicus GN=Minpp1 PE=1 SV=3)

HSP 1 Score: 70.8626 bits (172), Expect = 7.066e-12
Identity = 50/170 (29.41%), Postives = 81/170 (47.65%), Query Frame = 2
Query:  149 PSEIPDGCTPIHLNLVARHGTRAPTKKRMRELERLADHLEVLIREAKEKGS----SLQKVPGWLQGWKSPWQGKLKGGELISKGEDELYDLGIRIREKYPDLFSEEYHPDVYPIKATQVPRASASAVAFGMGLFNERGTLGPGRHRAFAVTSESRASDIKLRFHDCCDNY 646
            P  +   CTP+ L  + RHGTR PT K++R+L +L   L+   RE+ + GS    +L + P W   W          G+L+ KG  ++  L +R+   +PDLF  E +  +  I +++  R   S+ AF  GL+       P    +       R +D  +RF D C+ +
Sbjct:   71 PELLAGTCTPVQLVALIRHGTRYPTTKQIRKLRQLQGLLQT--RESVDGGSRVAAALDQWPLWYDDWMD--------GQLVEKGRQDMRQLALRLAALFPDLFCRENYGRLRLITSSK-HRCVDSSAAFLQGLWQHYHPGLPPPDVSDMECDPPRVNDKLMRFFDHCEKF 229          
The following BLAST results are available for this feature:
BLAST of FC920910 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
MINP1_MOUSE1.682e-1331.33Multiple inositol polyphosphate phosphatase 1 OS=M... [more]
MINP1_RAT7.066e-1229.41Multiple inositol polyphosphate phosphatase 1 OS=R... [more]
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Properties
Property NameValue
Genbank descriptionC32014F10EF RVDevelop1 Citrus clementina cDNA clone C32014F10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920910 ID=FC920910; Name=FC920910; organism=Citrus clementina; type=EST; length=675bp
GAAAGCTTCCGCTTCTTTTATGTTGATCCTGTGCGTACTTTTGTTGACGC
ATCTAAACGACGCCGTTCAAAATTTCGACGTTCGACGGCACCTCTCGACT
GTCTCAAGATACGACTTCGTAAAAGACGTCGTTGATAAGAACTTTGTACC
TTCTGAAATTCCCGATGGATGTACTCCAATTCACTTAAATCTTGTGGCAA
GGCACGGGACTCGTGCACCCACGAAGAAACGGATGAGGGAGTTGGAAAGA
TTGGCTGATCATTTGGAAGTACTTATAAGGGAAGCCAAAGAAAAGGGTTC
GTCTTTACAGAAAGTTCCGGGCTGGTTACAGGGATGGAAGTCTCCCTGGC
AAGGGAAACTGAAGGGTGGTGAATTGATTAGCAAAGGAGAAGATGAGTTA
TATGATCTCGGAATCAGGATTAGAGAAAAATATCCAGATTTGTTTAGCGA
GGAATATCACCCGGATGTCTATCCCATTAAGGCTACTCAGGTTCCTCGCG
CATCTGCGAGTGCAGTAGCATTTGGCATGGGGCTCTTTAACGAGAGAGGG
ACTCTAGGACCTGGGCGCCATCGAGCATTTGCTGTTACAAGTGAAAGCCG
TGCAAGTGATATAAAGCTGAGGTTTCATGATTGTTGTGACAACTACAAGG
ATTTTNAGGATAGTCAGGCCCCTGC
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