FC920913

Overview
NameFC920913
Unique NameFC920913
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length572
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14213 contig Ccv1_Contig14213:1..572. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of FC920913 vs. ExPASy Swiss-Prot
Match: Y2766_ARATH (Uncharacterized protein At2g37660, chloroplastic OS=Arabidopsis thaliana GN=At2g37660 PE=1 SV=2)

HSP 1 Score: 171.4 bits (433), Expect = 2.804e-42
Identity = 97/162 (59.88%), Postives = 118/162 (72.84%), Query Frame = 3 
Query:   96 KCRQVASSIPFLNSLPEFSSHAFRARYSPSSLTSLPRT---RYRRSCVSKTEAVKVLSMAKSTVLVTGAGGRTGQIVYKKLKERSEQYAARGLVRTEESKQKIGGADDLFIGDIRDSNSIIPAIQGIDALLILTSAVPKMKPDFDPAKGGRXEFYFEEGAYP 572
            K   VASS     S+P  SS  FR+  S S+    P     + RR  V+ + A     +   TVLVTGAGGRTGQIVYKKLKERSEQ+ ARGLVRT+ESK+KI G D++FIGDIRD+ SI PA++GIDAL+ILTSAVP+MKP FDP+KGGR EF+F++GAYP
Sbjct:   22 KSGAVASSFV---SVPRSSSLQFRSLVSDSTSICGPSKFTGKNRRVSVTVSAAATTEPL---TVLVTGAGGRTGQIVYKKLKERSEQFVARGLVRTKESKEKINGEDEVFIGDIRDTASIAPAVEGIDALVILTSAVPQMKPGFDPSKGGRPEFFFDDGAYP 177
[Close]
BLAST of FC920913 vs. ExPASy Swiss-Prot
Match: Y5224_ARATH (Uncharacterized protein At5g02240 OS=Arabidopsis thaliana GN=At5g02240 PE=1 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 5.121e-36
Identity = 73/100 (73.00%), Postives = 85/100 (85.00%), Query Frame = 3 
Query:  273 TVLVTGAGGRTGQIVYKKLKERSEQYAARGLVRTEESKQKIGGADDLFIGDIRDSNSIIPAIQGIDALLILTSAVPKMKPDFDPAKGGRXEFYFEEGAYP 572
            TVLVTGA GRTGQIVYKKLKE S+++ A+GLVR+ + K+KIGG  D+FIGDI D++SI PA QGIDAL+ILTSAVPKMKP FDP KGGR EF FE+G YP
Sbjct:    6 TVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKEKIGGEADVFIGDITDADSINPAFQGIDALVILTSAVPKMKPGFDPTKGGRPEFIFEDGQYP 105
The following BLAST results are available for this feature:
BLAST of FC920913 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
Y2766_ARATH2.804e-4259.88Uncharacterized protein At2g37660, chloroplastic O... [more]
Y5224_ARATH5.121e-3673.00Uncharacterized protein At5g02240 OS=Arabidopsis t... [more]
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Properties
Property NameValue
Genbank descriptionC32014G03EF RVDevelop1 Citrus clementina cDNA clone C32014G03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920913 ID=FC920913; Name=FC920913; organism=Citrus clementina; type=EST; length=572bp
ACAAGTAAGCTAATTCTTGATCAATGGCTACGCTTACACGCGTCACATTC
ATTTCCGCATCGTCACCATCAGGCAGCATTGGTCACTCTCGTAATAAATG
CCGTCAGGTGGCGTCATCAATACCATTCCTCAACAGCCTTCCAGAATTTT
CTTCTCACGCTTTCCGCGCTCGCTATTCTCCTTCTTCACTAACATCACTT
CCGAGAACGAGATACCGAAGGAGTTGCGTCAGTAAAACCGAAGCAGTCAA
AGTTTTATCGATGGCTAAGAGTACCGTTCTTGTCACCGGCGCTGGTGGTC
GAACCGGTCAAATAGTTTATAAGAAATTAAAGGAGAGGTCAGAGCAATAT
GCTGCTAGAGGTTTGGTCAGAACTGAGGAGAGCAAGCAGAAAATTGGCGG
AGCAGATGATCTTTTTATTGGTGACATAAGGGACTCTAATAGCATCATTC
CTGCAATCCAAGGAATCGATGCTCTCTTAATTCTCACAAGTGCAGTACCA
AAGATGAAACCTGATTTTGATCCTGCCAAAGGTGGAAGGNCTGAGTTCTA
CTTTGAAGAGGGTGCATATCCT
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