FC920924

Overview
NameFC920924
Unique NameFC920924
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length695
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC920924_ssr643 microsatellite FC920924_ssr643:643..654. BLAST: Citrus ESTs to TAIR9
Ccv1_Contig13917 contig Ccv1_Contig13917:707..1401. BLAST: Citrus Unigene V1 Contigs to TAIR9
Homology
BLAST of FC920924 vs. ExPASy Swiss-Prot
Match: FBL77_ARATH (F-box/LRR-repeat protein At4g29420 OS=Arabidopsis thaliana GN=At4g29420 PE=2 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 3.946e-45
Identity = 100/227 (44.05%), Postives = 139/227 (61.23%), Query Frame = 3
Query:    3 LKSCLWSVSNAPLSLAIDASNLVKLELRCVKPKSLVLETPLLHDFCLSLEVANEIRFQEFRNXXXXXXXXXXXXXXINTFPFGKTIKKLKVELLKPGEPIGMKNLNLGVLFDVFPNLSSLTLGPRAWSAVQSNF-DKGRLEIRTEMKVLKEIIARLVVDD---ISVTRSFIFAIMNICSNLSDMALLIHREEDSITASNLISSCTVDHPRVRWRWGMWKEGTEDTWI 671
            LKSC W+VSNAPLSLAI A NL++L+L+C KPKSL++ETP L    LS+E A  + F EF++              I+   FG  IKKL V+ +K  E      L L  +   FP ++SL+L PR WS ++++F  +G L        LK+I AR+ + D   +  T SFI +I+N    L+DM L+IH+++D    SNLIS+C + +PRVRW+WGMW EG ED W+
Sbjct:  220 LKSCHWTVSNAPLSLAIVAPNLLELKLKCNKPKSLLVETPKLVQCHLSVEDAEGVSFGEFQDLKTLELVSPDMYRLISNISFGNKIKKLAVDSVKSIEQSERLELGLATILKAFPGITSLSLSPRTWSDIETHFQSQGGLGDMKGTDSLKQITARVQMSDHTNVHQTVSFIRSIVNKYRGLTDMRLMIHQDKDPRVRSNLISTCMMSNPRVRWKWGMWAEGGEDMWV 446          
The following BLAST results are available for this feature:
BLAST of FC920924 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
FBL77_ARATH3.946e-4544.05F-box/LRR-repeat protein At4g29420 OS=Arabidopsis ... [more]
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Properties
Property NameValue
Genbank descriptionC32014H04EF RVDevelop1 Citrus clementina cDNA clone C32014H04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920924 ID=FC920924; Name=FC920924; organism=Citrus clementina; type=EST; length=695bp
ATCTTAAGAGCTGTCTGTGGTCCGTGTCAAATGCTCCGCTTTCTCTGGCT
ATAGATGCATCCAATCTAGTAAAACTCGAACTGAGATGTGTTAAACCAAA
ATCCCTTGTGCTTGAAACTCCTTTGCTGCATGATTTCTGTCTTTCGCTTG
AGGTAGCAAATGAGATTAGGTTTCAAGAGTTCCGGAATTTGATGAACTTA
CAGCTTGAATCTTCAAGTCTTAGTAGCCTCATCAACACATTTCCTTTTGG
TAAAACAATTAAGAAGCTAAAAGTGGAATTGCTAAAACCAGGTGAGCCTA
TTGGAATGAAAAACCTTAATCTGGGGGTATTGTTTGATGTATTTCCAAAT
TTGAGTTCTCTGACTTTGGGCCCTAGGGCTTGGTCAGCAGTGCAGTCCAA
CTTTGATAAAGGACGTCTGGAAATAAGGACAGAGATGAAGGTGCTGAAAG
AAATCATTGCACGTTTGGTGGTAGATGATATCAGCGTCACAAGGTCATTC
ATATTTGCGATCATGAATATATGCAGCAACTTGTCTGACATGGCCTTGCT
CATTCACCGGGAGGAAGATTCGATCACTGCTAGCAACCTCATCTCTAGCT
GCACAGTTGATCATCCGAGAGTTAGATGGAGATGGGGAATGTGGAAGGAA
GGAACAGAAGACACTTGGATCACTGATGGCATTTAATTTGCCAAC
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