FC920940
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC920940 vs. ExPASy Swiss-Prot
Match: CHMO_ARATH (Choline monooxygenase, chloroplastic OS=Arabidopsis thaliana GN=At4g29890 PE=2 SV=2) HSP 1 Score: 295.434 bits (755), Expect = 1.660e-79 Identity = 135/185 (72.97%), Postives = 160/185 (86.49%), Query Frame = 3 Query: 9 GIDSSLSYLCRREYTIECNWKVFCDNYLDGGYHVPYAHKGLASGLQLDSYSTTLYEKVSVQRCESGSTEGTDDTHRLGSKAFYAFIYPNFMINRYGPWMDTNLVIPLGPTRCEVVFDYFLDGSLMDDKAFIEQSLKDSEQVQIEDIILCEGVQRGLESPAYCSGRYAPSVEQAMYHFHSLLHCNL 563 G+DS LSY+CRREYTI+CNWKVFCDNYLDGGYHVPYAHKGL SGL L++YSTT++EKVS+Q C GS G D RLGS+A YAF+YPNFMINRYGPWMDTNLV+PLGP +C+VVFDYFLD SL DD+AFI++SL++S++VQ+ED++LCE VQRGLES AY GRYA VE+ M+HFH LLH NL Sbjct: 237 GVDSPLSYICRREYTIDCNWKVFCDNYLDGGYHVPYAHKGLMSGLDLETYSTTIFEKVSIQECGGGSKVGEDGFDRLGSEALYAFVYPNFMINRYGPWMDTNLVLPLGPRKCKVVFDYFLDPSLKDDEAFIKRSLEESDRVQMEDVMLCESVQRGLESQAYDKGRYA-LVEKPMHHFHCLLHHNL 420
BLAST of FC920940 vs. ExPASy Swiss-Prot
Match: CHMO_AMATR (Choline monooxygenase, chloroplastic OS=Amaranthus tricolor GN=CMO PE=2 SV=1) HSP 1 Score: 219.164 bits (557), Expect = 1.512e-56 Identity = 101/186 (54.30%), Postives = 134/186 (72.04%), Query Frame = 3 Query: 6 NGIDSSLSYLCRREYTIECNWKVFCDNYLDGGYHVPYAHKGLASGLQLDSYSTTLYEKVSVQRCESGSTEGTDDTHRLGSKAFYAFIYPNFMINRYGPWMDTNLVIPLGPTRCEVVFDYFLDGSLMDDKAFIEQSLKDSEQVQIEDIILCEGVQRGLESPAYCSGRYAPSVEQAMYHFHSLLHCNL 563 + D SL ++ R E+ +E NWKVFCDNYLD YHVPYAHK A+ L D+Y T L EKV +QR S S + + RLGS+AFYAFIYPNF + RYGPWM T + PLGP +C++V DY+L+ ++M+DK +IE+S+ ++ VQ ED++LCE VQRGLE+PAY SGRY +E+ ++HFH LH L Sbjct: 257 HAFDPSLQFINRSEFPMESNWKVFCDNYLDSAYHVPYAHKYYAAELDFDTYKTDLLEKVVIQRVASSSNK-PNGFDRLGSEAFYAFIYPNFAVERYGPWMTTMHIGPLGPRKCKLVVDYYLENAMMNDKPYIEKSIMINDNVQKEDVVLCESVQRGLETPAYRSGRYVMPIEKGIHHFHCWLHQTL 441
BLAST of FC920940 vs. ExPASy Swiss-Prot
Match: CHMO_BETVU (Choline monooxygenase, chloroplastic OS=Beta vulgaris GN=CMO PE=2 SV=1) HSP 1 Score: 211.46 bits (537), Expect = 3.152e-54 Identity = 95/183 (51.91%), Postives = 131/183 (71.58%), Query Frame = 3 Query: 6 NGIDSSLSYLCRREYTIECNWKVFCDNYLDGGYHVPYAHKGLASGLQLDSYSTTLYEKVSVQRCESGSTEGTDDTHRLGSKAFYAFIYPNFMINRYGPWMDTNLVIPLGPTRCEVVFDYFLDGSLMDDKAFIEQSLKDSEQVQIEDIILCEGVQRGLESPAYCSGRYAPSVEQAMYHFHSLLH 554 + D +L + R E+ +ECNWKVFCDNYLD YHVPYAHK A+ L D+Y+T + EK +QR S S + D RLG++AFYAFIYPNF + RYG WM T V+P+G +C++V DY+L+ +++DDKA+I++ + ++ VQ ED +LCE VQRGLE+PAY SGRY +E+ ++HFH LH Sbjct: 261 HAFDPNLKFTHRSEFPMECNWKVFCDNYLDSSYHVPYAHKYYAAELDFDTYNTEMIEKCVIQRVGSSSNK-PDGFDRLGTEAFYAFIYPNFAVERYGTWMTTMHVVPMGQRKCKLVVDYYLEKAMLDDKAYIDKGIAINDNVQKEDKVLCESVQRGLETPAYRSGRYVMPIEKGIHHFHCWLH 442
BLAST of FC920940 vs. ExPASy Swiss-Prot
Match: CHMO_SPIOL (Choline monooxygenase, chloroplastic OS=Spinacia oleracea GN=CMO PE=1 SV=1) HSP 1 Score: 208.764 bits (530), Expect = 2.043e-53 Identity = 94/186 (50.54%), Postives = 130/186 (69.89%), Query Frame = 3 Query: 6 NGIDSSLSYLCRREYTIECNWKVFCDNYLDGGYHVPYAHKGLASGLQLDSYSTTLYEKVSVQRCESGSTEGTDDTHRLGSKAFYAFIYPNFMINRYGPWMDTNLVIPLGPTRCEVVFDYFLDGSLMDDKAFIEQSLKDSEQVQIEDIILCEGVQRGLESPAYCSGRYAPSVEQAMYHFHSLLHCNL 563 + D SL ++ R E+ +E NWK+F DNYLD YHVPYAHK A+ L D+Y T + E V++QR E GS+ D R+G +AFYAF YPNF + RYGPWM T + PLGP +C++V DY+++ S++DDK +IE+ + ++ VQ ED++LCE VQRGLE+PAY SGRY +E+ ++HFH L L Sbjct: 254 HAFDPSLQFIHRSEFPMESNWKIFSDNYLDSSYHVPYAHKYYATELNFDTYDTQMIENVTIQRVE-GSSNKPDGFDRVGIQAFYAFAYPNFAVERYGPWMTTMHIHPLGPRKCKLVVDYYIENSMLDDKDYIEKGIAINDNVQREDVVLCESVQRGLETPAYRSGRYVMPIEKGIHHFHCWLQQTL 438
BLAST of FC920940 vs. ExPASy Swiss-Prot
Match: CHMO_ATRHO (Choline monooxygenase, chloroplastic OS=Atriplex hortensis GN=CMO PE=2 SV=1) HSP 1 Score: 205.682 bits (522), Expect = 1.729e-52 Identity = 91/183 (49.73%), Postives = 128/183 (69.95%), Query Frame = 3 Query: 6 NGIDSSLSYLCRREYTIECNWKVFCDNYLDGGYHVPYAHKGLASGLQLDSYSTTLYEKVSVQRCESGSTEGTDDTHRLGSKAFYAFIYPNFMINRYGPWMDTNLVIPLGPTRCEVVFDYFLDGSLMDDKAFIEQSLKDSEQVQIEDIILCEGVQRGLESPAYCSGRYAPSVEQAMYHFHSLLH 554 + D +L ++ R E+ IE NWK+F DNYLD YHVPYAHK A+ L D+Y T + V++QR S G + RLG++AFYAF YPNF + RYGPWM T ++PLGP +C++V DY+++ S +DDK +IE+ + ++ VQ ED++LCE VQ+GLE+PAY SGRY +E+ ++HFH LH Sbjct: 255 HAFDPNLQFINRSEFPIESNWKIFSDNYLDSSYHVPYAHKYYATELDFDTYQTDMVGNVTIQRVAGTSNNGFN---RLGTQAFYAFAYPNFAVERYGPWMTTMHIVPLGPRKCKLVVDYYIEKSKLDDKDYIEKGIAINDNVQKEDVVLCESVQKGLETPAYRSGRYVMPIEKGIHHFHCWLH 434 The following BLAST results are available for this feature:
BLAST of FC920940 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 5
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >FC920940 ID=FC920940; Name=FC920940; organism=Citrus clementina; type=EST; length=650bpback to top |