FC920940

Overview
NameFC920940
Unique NameFC920940
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length650
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920940 vs. ExPASy Swiss-Prot
Match: CHMO_ARATH (Choline monooxygenase, chloroplastic OS=Arabidopsis thaliana GN=At4g29890 PE=2 SV=2)

HSP 1 Score: 295.434 bits (755), Expect = 1.660e-79
Identity = 135/185 (72.97%), Postives = 160/185 (86.49%), Query Frame = 3
Query:    9 GIDSSLSYLCRREYTIECNWKVFCDNYLDGGYHVPYAHKGLASGLQLDSYSTTLYEKVSVQRCESGSTEGTDDTHRLGSKAFYAFIYPNFMINRYGPWMDTNLVIPLGPTRCEVVFDYFLDGSLMDDKAFIEQSLKDSEQVQIEDIILCEGVQRGLESPAYCSGRYAPSVEQAMYHFHSLLHCNL 563
            G+DS LSY+CRREYTI+CNWKVFCDNYLDGGYHVPYAHKGL SGL L++YSTT++EKVS+Q C  GS  G D   RLGS+A YAF+YPNFMINRYGPWMDTNLV+PLGP +C+VVFDYFLD SL DD+AFI++SL++S++VQ+ED++LCE VQRGLES AY  GRYA  VE+ M+HFH LLH NL
Sbjct:  237 GVDSPLSYICRREYTIDCNWKVFCDNYLDGGYHVPYAHKGLMSGLDLETYSTTIFEKVSIQECGGGSKVGEDGFDRLGSEALYAFVYPNFMINRYGPWMDTNLVLPLGPRKCKVVFDYFLDPSLKDDEAFIKRSLEESDRVQMEDVMLCESVQRGLESQAYDKGRYA-LVEKPMHHFHCLLHHNL 420          
BLAST of FC920940 vs. ExPASy Swiss-Prot
Match: CHMO_AMATR (Choline monooxygenase, chloroplastic OS=Amaranthus tricolor GN=CMO PE=2 SV=1)

HSP 1 Score: 219.164 bits (557), Expect = 1.512e-56
Identity = 101/186 (54.30%), Postives = 134/186 (72.04%), Query Frame = 3
Query:    6 NGIDSSLSYLCRREYTIECNWKVFCDNYLDGGYHVPYAHKGLASGLQLDSYSTTLYEKVSVQRCESGSTEGTDDTHRLGSKAFYAFIYPNFMINRYGPWMDTNLVIPLGPTRCEVVFDYFLDGSLMDDKAFIEQSLKDSEQVQIEDIILCEGVQRGLESPAYCSGRYAPSVEQAMYHFHSLLHCNL 563
            +  D SL ++ R E+ +E NWKVFCDNYLD  YHVPYAHK  A+ L  D+Y T L EKV +QR  S S +  +   RLGS+AFYAFIYPNF + RYGPWM T  + PLGP +C++V DY+L+ ++M+DK +IE+S+  ++ VQ ED++LCE VQRGLE+PAY SGRY   +E+ ++HFH  LH  L
Sbjct:  257 HAFDPSLQFINRSEFPMESNWKVFCDNYLDSAYHVPYAHKYYAAELDFDTYKTDLLEKVVIQRVASSSNK-PNGFDRLGSEAFYAFIYPNFAVERYGPWMTTMHIGPLGPRKCKLVVDYYLENAMMNDKPYIEKSIMINDNVQKEDVVLCESVQRGLETPAYRSGRYVMPIEKGIHHFHCWLHQTL 441          
BLAST of FC920940 vs. ExPASy Swiss-Prot
Match: CHMO_BETVU (Choline monooxygenase, chloroplastic OS=Beta vulgaris GN=CMO PE=2 SV=1)

HSP 1 Score: 211.46 bits (537), Expect = 3.152e-54
Identity = 95/183 (51.91%), Postives = 131/183 (71.58%), Query Frame = 3
Query:    6 NGIDSSLSYLCRREYTIECNWKVFCDNYLDGGYHVPYAHKGLASGLQLDSYSTTLYEKVSVQRCESGSTEGTDDTHRLGSKAFYAFIYPNFMINRYGPWMDTNLVIPLGPTRCEVVFDYFLDGSLMDDKAFIEQSLKDSEQVQIEDIILCEGVQRGLESPAYCSGRYAPSVEQAMYHFHSLLH 554
            +  D +L +  R E+ +ECNWKVFCDNYLD  YHVPYAHK  A+ L  D+Y+T + EK  +QR  S S +  D   RLG++AFYAFIYPNF + RYG WM T  V+P+G  +C++V DY+L+ +++DDKA+I++ +  ++ VQ ED +LCE VQRGLE+PAY SGRY   +E+ ++HFH  LH
Sbjct:  261 HAFDPNLKFTHRSEFPMECNWKVFCDNYLDSSYHVPYAHKYYAAELDFDTYNTEMIEKCVIQRVGSSSNK-PDGFDRLGTEAFYAFIYPNFAVERYGTWMTTMHVVPMGQRKCKLVVDYYLEKAMLDDKAYIDKGIAINDNVQKEDKVLCESVQRGLETPAYRSGRYVMPIEKGIHHFHCWLH 442          
BLAST of FC920940 vs. ExPASy Swiss-Prot
Match: CHMO_SPIOL (Choline monooxygenase, chloroplastic OS=Spinacia oleracea GN=CMO PE=1 SV=1)

HSP 1 Score: 208.764 bits (530), Expect = 2.043e-53
Identity = 94/186 (50.54%), Postives = 130/186 (69.89%), Query Frame = 3
Query:    6 NGIDSSLSYLCRREYTIECNWKVFCDNYLDGGYHVPYAHKGLASGLQLDSYSTTLYEKVSVQRCESGSTEGTDDTHRLGSKAFYAFIYPNFMINRYGPWMDTNLVIPLGPTRCEVVFDYFLDGSLMDDKAFIEQSLKDSEQVQIEDIILCEGVQRGLESPAYCSGRYAPSVEQAMYHFHSLLHCNL 563
            +  D SL ++ R E+ +E NWK+F DNYLD  YHVPYAHK  A+ L  D+Y T + E V++QR E GS+   D   R+G +AFYAF YPNF + RYGPWM T  + PLGP +C++V DY+++ S++DDK +IE+ +  ++ VQ ED++LCE VQRGLE+PAY SGRY   +E+ ++HFH  L   L
Sbjct:  254 HAFDPSLQFIHRSEFPMESNWKIFSDNYLDSSYHVPYAHKYYATELNFDTYDTQMIENVTIQRVE-GSSNKPDGFDRVGIQAFYAFAYPNFAVERYGPWMTTMHIHPLGPRKCKLVVDYYIENSMLDDKDYIEKGIAINDNVQREDVVLCESVQRGLETPAYRSGRYVMPIEKGIHHFHCWLQQTL 438          
BLAST of FC920940 vs. ExPASy Swiss-Prot
Match: CHMO_ATRHO (Choline monooxygenase, chloroplastic OS=Atriplex hortensis GN=CMO PE=2 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 1.729e-52
Identity = 91/183 (49.73%), Postives = 128/183 (69.95%), Query Frame = 3
Query:    6 NGIDSSLSYLCRREYTIECNWKVFCDNYLDGGYHVPYAHKGLASGLQLDSYSTTLYEKVSVQRCESGSTEGTDDTHRLGSKAFYAFIYPNFMINRYGPWMDTNLVIPLGPTRCEVVFDYFLDGSLMDDKAFIEQSLKDSEQVQIEDIILCEGVQRGLESPAYCSGRYAPSVEQAMYHFHSLLH 554
            +  D +L ++ R E+ IE NWK+F DNYLD  YHVPYAHK  A+ L  D+Y T +   V++QR    S  G +   RLG++AFYAF YPNF + RYGPWM T  ++PLGP +C++V DY+++ S +DDK +IE+ +  ++ VQ ED++LCE VQ+GLE+PAY SGRY   +E+ ++HFH  LH
Sbjct:  255 HAFDPNLQFINRSEFPIESNWKIFSDNYLDSSYHVPYAHKYYATELDFDTYQTDMVGNVTIQRVAGTSNNGFN---RLGTQAFYAFAYPNFAVERYGPWMTTMHIVPLGPRKCKLVVDYYIEKSKLDDKDYIEKGIAINDNVQKEDVVLCESVQKGLETPAYRSGRYVMPIEKGIHHFHCWLH 434          
The following BLAST results are available for this feature:
BLAST of FC920940 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
CHMO_ARATH1.660e-7972.97Choline monooxygenase, chloroplastic OS=Arabidopsi... [more]
CHMO_AMATR1.512e-5654.30Choline monooxygenase, chloroplastic OS=Amaranthus... [more]
CHMO_BETVU3.152e-5451.91Choline monooxygenase, chloroplastic OS=Beta vulga... [more]
CHMO_SPIOL2.043e-5350.54Choline monooxygenase, chloroplastic OS=Spinacia o... [more]
CHMO_ATRHO1.729e-5249.73Choline monooxygenase, chloroplastic OS=Atriplex h... [more]
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Properties
Property NameValue
Genbank descriptionC32201B02EF RVDevelopN Citrus clementina cDNA clone C32201B02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920940 ID=FC920940; Name=FC920940; organism=Citrus clementina; type=EST; length=650bp
GCATAAATGGTATTGATTCCTCCCTAAGCTACCTATGCAGAAGAGAGTAC
ACCATTGAATGCAACTGGAAGGTTTTCTGCGACAACTACTTAGATGGCGG
TTACCATGTTCCATATGCACATAAAGGCCTTGCATCTGGTCTTCAGCTGG
ATTCTTACTCAACAACGTTATATGAAAAGGTTAGCGTCCAAAGATGTGAA
AGTGGCTCTACAGAAGGCACAGATGATACCCATCGCCTTGGATCTAAAGC
GTTTTATGCTTTCATATATCCAAACTTCATGATTAATCGCTATGGACCTT
GGATGGACACCAATCTGGTGATTCCTCTCGGACCTACAAGATGCGAAGTG
GTGTTTGACTACTTTCTCGATGGTTCTTTGATGGACGACAAAGCTTTTAT
AGAGCAAAGCCTTAAAGATAGTGAGCAAGTGCAGATAGAAGACATTATTC
TTTGTGAAGGTGTCCAGAGGGGCCTTGAATCTCCAGCATATTGTAGCGGC
AGGTATGCACCCTCTGTCGAACAAGCCATGTACCATTTCCATTCTCTACT
ACATTGTAACCTTACGAACTAGTTCACATTTTGTTCCAATCCCATAAATT
CCAATTAAGATTTTGAAATTCACGAAAAAAAAAAAAAAAAAAAAAAAAAA
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