FC920946

Overview
NameFC920946
Unique NameFC920946
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length758
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14219 contig Ccv1_Contig14219:1..758. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920946 vs. ExPASy Swiss-Prot
Match: Y992_SYNY3 (Uncharacterized tRNA/rRNA methyltransferase slr0992 OS=Synechocystis sp. (strain PCC 6803) GN=slr0992 PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 5.454e-30
Identity = 73/152 (48.03%), Postives = 101/152 (66.45%), Query Frame = 3
Query:  303 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVVKVHSTWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSETFGGGTIRIPMVETYXRCLNLSVSVGIAVYEA 758
            +++VLV+PQIP NTG IARTCAA+   LHLVGPLGF++ D  LKRAGLDYWPYV +  H++  EF  ++R Q G   LL F+  GT    + +Y+  D+L+ GSET GL P+ + D +++      + IPM  +  R LNL+ S  IA++EA
Sbjct:    2 VKLVLVNPQIPPNTGNIARTCAATGTELHLVGPLGFELGDRYLKRAGLDYWPYVDLHYHNSCEEFITHWRGQGG--NLLGFSVTGTVNFWDYTYQSTDWLMMGSETDGL-PQMMRDLSTQ-----LLCIPMPHSEVRSLNLASSAAIALFEA 145          
BLAST of FC920946 vs. ExPASy Swiss-Prot
Match: Y766_HAEIN (Probable tRNA/rRNA methyltransferase HI0766 OS=Haemophilus influenzae GN=HI0766 PE=1 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.534e-27
Identity = 68/152 (44.74%), Postives = 90/152 (59.21%), Query Frame = 3
Query:  303 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVVKVHSTWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSETFGGGTIRIPMVETYXRCLNLSVSVGIAVYEA 758
            L +VL  P+IP NTG I R CA +   LHL+ PLGF  DD +L+R+GLDY  +  +K H T+    + F + E  KRL A T +G   HS++ ++ GDYL+FG ET G+P   L +   E      IRIPM     R +NLS SV + VYEA
Sbjct:    2 LDIVLYEPEIPQNTGNIIRLCANTGFRLHLIEPLGFTWDDKRLRRSGLDYHEFAEIKRHKTF----EAFLESEKPKRLFALTTKGCPAHSQVKFKLGDYLMFGPETRGIPMSILNEMPMEQ----KIRIPMTAN-SRSMNLSNSVAVTVYEA 144          
BLAST of FC920946 vs. ExPASy Swiss-Prot
Match: YIBK_ECOLI (Uncharacterized tRNA/rRNA methyltransferase yibK OS=Escherichia coli (strain K12) GN=yibK PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 7.372e-27
Identity = 69/152 (45.39%), Postives = 89/152 (58.55%), Query Frame = 3
Query:  303 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVVKVHSTWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSETFGGGTIRIPMVETYXRCLNLSVSVGIAVYEA 758
            L +VL  P+IP NTG I R CA +   LH++ P+GF  DD +L+RAGLDY  +  V  H  +      F + E  +RL A T +GT  HS +SY+ GDYL+FG ET GLP   L    +E      IRIPMV    R +NLS +V + VYEA
Sbjct:    2 LNIVLYEPEIPPNTGNIIRLCANTGFRLHIIEPMGFAWDDKRLRRAGLDYHEFTAVTRHHDYRA----FLEAENPQRLFALTTKGTPAHSAVSYQDGDYLMFGPETRGLPASILDALPAEQ----KIRIPMVPD-SRSMNLSNAVSVVVYEA 144          
BLAST of FC920946 vs. ExPASy Swiss-Prot
Match: YIBK_ECOL6 (Uncharacterized tRNA/rRNA methyltransferase yibK OS=Escherichia coli O6 GN=yibK PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 7.372e-27
Identity = 69/152 (45.39%), Postives = 89/152 (58.55%), Query Frame = 3
Query:  303 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVVKVHSTWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSETFGGGTIRIPMVETYXRCLNLSVSVGIAVYEA 758
            L +VL  P+IP NTG I R CA +   LH++ P+GF  DD +L+RAGLDY  +  V  H  +      F + E  +RL A T +GT  HS +SY+ GDYL+FG ET GLP   L    +E      IRIPMV    R +NLS +V + VYEA
Sbjct:    2 LNIVLYEPEIPPNTGNIIRLCANTGFRLHIIEPMGFAWDDKRLRRAGLDYHEFTAVTRHHDYRA----FLEAENPQRLFALTTKGTPAHSAVSYQDGDYLMFGPETRGLPASILDALPAEQ----KIRIPMVPD-SRSMNLSNAVSVVVYEA 144          
BLAST of FC920946 vs. ExPASy Swiss-Prot
Match: CSPR_BACSU (Uncharacterized tRNA/rRNA methyltransferase cspR OS=Bacillus subtilis GN=cspR PE=3 SV=2)

HSP 1 Score: 113.235 bits (282), Expect = 1.537e-24
Identity = 67/155 (43.23%), Postives = 87/155 (56.13%), Query Frame = 3
Query:  303 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVVKVHSTWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGD---YLIFGSETSGLPPEALLDCTSETFGGGTIRIPMVETYXRCLNLSVSVGIAVYEA 758
            L VVL  P+IP NTG IARTCAA+   LHL+ PLGF  DD  LKRAGLDYW +V V  H +  E  + ++    + +    TK G   H+   Y   D   + +FG ETSGLP + + +          +R+PM E + R LNLS +  I VYEA
Sbjct:    6 LHVVLYQPEIPANTGNIARTCAATNTTLHLIRPLGFSTDDKMLKRAGLDYWEFVNVVYHDSLEELFEAYK----KGKFFFITKFGQQPHTSFDYTDLDEDYFFVFGRETSGLPKDLIQNNMDR-----CLRLPMTE-HVRSLNLSNTAAILVYEA 150          
BLAST of FC920946 vs. ExPASy Swiss-Prot
Match: YGL3_BACST (Uncharacterized tRNA/rRNA methyltransferase in gldA 3'region OS=Bacillus stearothermophilus PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.301e-23
Identity = 68/155 (43.87%), Postives = 85/155 (54.84%), Query Frame = 3
Query:  303 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVVKVHSTWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISY---RKGDYLIFGSETSGLPPEALLDCTSETFGGGTIRIPMVETYXRCLNLSVSVGIAVYEA 758
            L VVL  P+IP NTG IARTCAA+   LHL+ PLGF  DD  L+RAGLDYW +V +  + +     D+F QQ         TK G   ++   +    K  + IFG ET+GLP E L +          +RIPM E   R LNLS +  I VYEA
Sbjct:    3 LHVVLFQPEIPANTGNIARTCAATNTALHLIRPLGFSTDDKMLRRAGLDYWEFVNIHYYDS----LDHFFQQNQNGDFYYITKFGKRYYTSYDFSDPSKEIFFIFGRETTGLPKELLAENEDR-----CLRIPMTEN-VRALNLSNTAAILVYEA 147          
BLAST of FC920946 vs. ExPASy Swiss-Prot
Match: Y956_LISMF (Uncharacterized tRNA/rRNA methyltransferase LMOf2365_0956 OS=Listeria monocytogenes serotype 4b (strain F2365) GN=LMOf2365_0956 PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.786e-23
Identity = 68/153 (44.44%), Postives = 88/153 (57.52%), Query Frame = 3
Query:  309 VVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVVKVHSTWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISY---RKGDYLIFGSETSGLPPEALLDCTSETFGGGTIRIPMVETYXRCLNLSVSVGIAVYEA 758
            +VL  P+IP NTG I+RTCA +   LHL+ PLGF  DD  LKRAGLDYW  V +  + +  EF   F + EG +     TK G   +S+I Y    K  + +FG ET+GL P+ALL    E      +RIPM + + R LNLS +  I  YEA
Sbjct:    5 IVLYQPEIPANTGNISRTCAGTDTYLHLIRPLGFSTDDKMLKRAGLDYWDNVKLSYYDSLDEF---FEKNEGGE-FYYITKFGRHVYSDIDYSDPNKDYFFVFGKETTGL-PDALLQKNEE----NCLRIPMTD-HIRSLNLSNTAAILAYEA 147          
BLAST of FC920946 vs. ExPASy Swiss-Prot
Match: Y934_LISIN (Uncharacterized tRNA/rRNA methyltransferase lin0934 OS=Listeria innocua GN=lin0934 PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.879e-22
Identity = 65/153 (42.48%), Postives = 86/153 (56.21%), Query Frame = 3
Query:  309 VVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVVKVHSTWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISY---RKGDYLIFGSETSGLPPEALLDCTSETFGGGTIRIPMVETYXRCLNLSVSVGIAVYEA 758
            +VL  P+IP NTG I+RTCA +   LHL+ PLGF  DD  LKRAGLDYW  V +  + +  EF   F +  G +     TK G   +S++ Y    K  + +FG ET+GLP E LL    E      +RIPM + + R LNLS +  +  YEA
Sbjct:    5 IVLYQPEIPANTGNISRTCAGTDTYLHLIRPLGFSTDDKMLKRAGLDYWDNVKLSYYDSLDEF---FEKNAGGE-FYYITKFGRHVYSDVDYSDPNKNYFFVFGKETTGLPDE-LLQANEE----NCLRIPMTD-HIRSLNLSNTAAVLAYEA 147          
BLAST of FC920946 vs. ExPASy Swiss-Prot
Match: Y521_MYCPN (Uncharacterized tRNA/rRNA methyltransferase MG346 homolog OS=Mycoplasma pneumoniae GN=MPN_521 PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.667e-18
Identity = 55/155 (35.48%), Postives = 80/155 (51.61%), Query Frame = 3
Query:  303 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVVKVHSTWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISY----RKGDYLIFGSETSGLPPEALLDCTSETFGGGTIRIPMVETYXRCLNLSVSVGIAVYE 755
            + +VL  P+IP NTG I R+C A    LHL+ P GF ++D ++ RAGL+ W  V +  H +W  F          K +   TK GT+T  +I+     R+  Y +FG ET GLP   +     E +    +RIP +    R +NLS +V   +YE
Sbjct:    6 INIVLFCPEIPNNTGNIVRSCTAFKANLHLIKPYGFFLNDKRMVRAGLNCWDKVQMFEHKSWEHF---IETTPPNKAIWLLTKSGTTTPDQINMQTDNREQLYFVFGQETKGLPQTLM-----EQYSQNQVRIP-IWNPVRSINLSNTVACVLYE 151          
BLAST of FC920946 vs. ExPASy Swiss-Prot
Match: Y346_MYCGE (Uncharacterized tRNA/rRNA methyltransferase MG346 OS=Mycoplasma genitalium GN=MG346 PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 9.986e-16
Identity = 52/155 (33.55%), Postives = 77/155 (49.68%), Query Frame = 3
Query:  303 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVVKVHSTWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEI----SYRKGDYLIFGSETSGLPPEALLDCTSETFGGGTIRIPMVETYXRCLNLSVSVGIAVYE 755
            + +VL  P+IP NTG I R+C A    LHL+ P GF ++D ++ RAGL+ W  + +  H +W  F    +     K +   TK G  T  +I          Y +FG ET GLP   +     + F    IRIP+  +  R +NL+ +V   +YE
Sbjct:    6 INIVLFCPEIPNNTGNIVRSCTAFKANLHLIKPYGFFLNDKRMVRAGLNCWDKIQLFEHKSWEHF---LQATTENKTIWLLTKSGDKTPDQICMTNKLPNELYFVFGQETKGLPKTIM-----DNFKQNQIRIPIWNS-VRSINLANAVVCILYE 151          
The following BLAST results are available for this feature:
BLAST of FC920946 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
Y992_SYNY35.454e-3048.03Uncharacterized tRNA/rRNA methyltransferase slr099... [more]
Y766_HAEIN2.534e-2744.74Probable tRNA/rRNA methyltransferase HI0766 OS=Hae... [more]
YIBK_ECOLI7.372e-2745.39Uncharacterized tRNA/rRNA methyltransferase yibK O... [more]
YIBK_ECOL67.372e-2745.39Uncharacterized tRNA/rRNA methyltransferase yibK O... [more]
CSPR_BACSU1.537e-2443.23Uncharacterized tRNA/rRNA methyltransferase cspR O... [more]
YGL3_BACST1.301e-2343.87Uncharacterized tRNA/rRNA methyltransferase in gld... [more]
Y956_LISMF3.786e-2344.44Uncharacterized tRNA/rRNA methyltransferase LMOf23... [more]
Y934_LISIN1.879e-2242.48Uncharacterized tRNA/rRNA methyltransferase lin093... [more]
Y521_MYCPN3.667e-1835.48Uncharacterized tRNA/rRNA methyltransferase MG346 ... [more]
Y346_MYCGE9.986e-1633.55Uncharacterized tRNA/rRNA methyltransferase MG346 ... [more]
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Properties
Property NameValue
Genbank descriptionC32201B08EF RVDevelopN Citrus clementina cDNA clone C32201B08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920946 ID=FC920946; Name=FC920946; organism=Citrus clementina; type=EST; length=758bp
GGAGGGAGAGGAAGGCAACATGCAACAGGCAACGGCAAACAAAGACCAAA
GAGAGCGTTAGTGTAAATATGGACACAACGAGTCTTAAAACCTTTAATGC
AATAGTACCTTTGCATGCCCATTTCCGTTCAAGAGCTCCGAACTTCACTC
AATTCAAGAACAATTTCAGCTTCTCTTCACCTCTCTCCTCTTTCTCTTCT
TTTCGCTTCTCTCCTATCTGCTCTCTACCTGAAAGGGAAAATGGCGGGTT
TATGCCACGTGGGGTTGGTGAGGCAGTTAACGGTCTCTCCCAAAACAAGT
TTCTTCAAGTTGTTTTAGTCTCTCCCCAGATTCCTGGAAACACAGGTTGC
ATTGCGAGAACATGTGCAGCATCAGCTTGTGGACTACACTTAGTTGGGCC
ATTAGGATTTCAAGTGGATGATACAAAATTAAAGCGTGCTGGATTGGATT
ACTGGCCATATGTGGTTGTTAAAGTTCATAGCACATGGGCAGAGTTTCGA
GATTATTTCAGGCAACAGGAAGGGGAAAAGAGATTGTTGGCATTTACTAA
AAGAGGAACCTCAACACATTCAGAAATCTCATATAGAAAAGGAGATTATC
TCATATTTGGCTCAGAAACTAGTGGTCTACCACCTGAAGCATTGCTAGAC
TGCACAAGCGAAACATTTGGGGGTGGGACAATTCGAATTCCAATGGTTGA
AACTTATGNTAGATGTCTGAATCTCTCTGTAAGTGTTGGCATTGCTGTGT
ATGAAGCT
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