FC920949
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC920949 vs. ExPASy Swiss-Prot
Match: RS17_SOLLC (40S ribosomal protein S17 OS=Solanum lycopersicum GN=RPS17 PE=2 SV=3) HSP 1 Score: 117.857 bits (294), Expect = 1.659e-26 Identity = 58/69 (84.06%), Postives = 63/69 (91.30%), Query Frame = 2 Query: 2 AGFSTHLMNRIQNGPVRGISLKLQEVERERRMDFVPDESAIKTDQIEVDKATLDMLEALGMNEIPGLVR 208 AGFSTHLM RIQ GPVRGISLKLQE ERERRMDFVPDESAIKTD IEVDK TLDML ALGM+++PG+V+ Sbjct: 51 AGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKTDLIEVDKETLDMLSALGMSDLPGVVK 119
BLAST of FC920949 vs. ExPASy Swiss-Prot
Match: RS174_ARATH (40S ribosomal protein S17-4 OS=Arabidopsis thaliana GN=RPS17D PE=2 SV=3) HSP 1 Score: 117.472 bits (293), Expect = 2.166e-26 Identity = 60/83 (72.29%), Postives = 69/83 (83.13%), Query Frame = 2 Query: 2 AGFSTHLMNRIQNGPVRGISLKLQEVERERRMDFVPDESAIKTDQIEVDKATLDMLEALGMNEIPGLVRVDP---VAPGVEFG 241 AGFSTHLM RIQ GPVRGISLKLQE ERERRMDFVPDESAIKTD+I+VDK TL+ML +LGM++ PG+ V+P +AP FG Sbjct: 51 AGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLEMLASLGMSDTPGISAVEPQQAMAPIAAFG 133
BLAST of FC920949 vs. ExPASy Swiss-Prot
Match: RS172_ARATH (40S ribosomal protein S17-2 OS=Arabidopsis thaliana GN=RPS17B PE=2 SV=3) HSP 1 Score: 114.39 bits (285), Expect = 1.834e-25 Identity = 59/83 (71.08%), Postives = 68/83 (81.93%), Query Frame = 2 Query: 2 AGFSTHLMNRIQNGPVRGISLKLQEVERERRMDFVPDESAIKTDQIEVDKATLDMLEALGMNEIPGLVRVDP---VAPGVEFG 241 AGFSTHLM RIQ GPVRGISLKLQE ERERRMDFVPDESAIKTD+I+VDK TL+ML +LGM++ G+ V+P +AP FG Sbjct: 51 AGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLEMLASLGMSDTSGISAVEPQQAMAPIAAFG 133
BLAST of FC920949 vs. ExPASy Swiss-Prot
Match: RS171_ARATH (40S ribosomal protein S17-1 OS=Arabidopsis thaliana GN=RPS17A PE=1 SV=3) HSP 1 Score: 114.39 bits (285), Expect = 1.834e-25 Identity = 60/83 (72.29%), Postives = 68/83 (81.93%), Query Frame = 2 Query: 2 AGFSTHLMNRIQNGPVRGISLKLQEVERERRMDFVPDESAIKTDQIEVDKATLDMLEALGMNEIPGLVRVDP---VAPGVEFG 241 AGFSTHLM RIQ GPVRGISLKLQE ERERRMDFVPDESAIKTD+I+VDK TL+ML +LGM++ G+ VDP +AP FG Sbjct: 51 AGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLEMLASLGMSDTLGISAVDPQQAMAPIPAFG 133
BLAST of FC920949 vs. ExPASy Swiss-Prot
Match: RS173_ARATH (40S ribosomal protein S17-3 OS=Arabidopsis thaliana GN=RPS17C PE=2 SV=3) HSP 1 Score: 109.383 bits (272), Expect = 5.900e-24 Identity = 56/80 (70.00%), Postives = 66/80 (82.50%), Query Frame = 2 Query: 2 AGFSTHLMNRIQNGPVRGISLKLQEVERERRMDFVPDESAIKTDQIEVDKATLDMLEALGMNEIPGLVRVD---PVAPGV 232 AGFSTHLM RIQ GPVRGISLKLQE ERERRMDFVPDESAIK D ++VDK TL+ML +LGM++I G+ +V+ +AP V Sbjct: 51 AGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKIDDVKVDKETLEMLASLGMSDIAGISQVETQQAMAPAV 130
BLAST of FC920949 vs. ExPASy Swiss-Prot
Match: RS17A_SCHPO (40S ribosomal protein S17-A OS=Schizosaccharomyces pombe GN=rps17a PE=2 SV=1) HSP 1 Score: 85.5001 bits (210), Expect = 9.123e-17 Identity = 44/79 (55.70%), Postives = 58/79 (73.42%), Query Frame = 2 Query: 2 AGFSTHLMNRIQNGPVRGISLKLQEVERERRMDFVPDESAIKTDQIEVDKATLDMLEALGMNEIPGLVRVDPVAPGVEF 238 AG++THLM RIQ GPVRGIS KLQE ERER+ +VP+ S ++ D++ VD+ T DML++LG ++IP VRV AP F Sbjct: 51 AGYTTHLMKRIQRGPVRGISFKLQEEERERKDQYVPEVSELEVDRVNVDQDTKDMLKSLGYDQIP--VRVLAPAPQERF 127
BLAST of FC920949 vs. ExPASy Swiss-Prot
Match: RS17B_SCHPO (40S ribosomal protein S17-B OS=Schizosaccharomyces pombe GN=rps17b PE=1 SV=1) HSP 1 Score: 84.7297 bits (208), Expect = 1.556e-16 Identity = 41/68 (60.29%), Postives = 53/68 (77.94%), Query Frame = 2 Query: 2 AGFSTHLMNRIQNGPVRGISLKLQEVERERRMDFVPDESAIKTDQIEVDKATLDMLEALGMNEIPGLV 205 AG++THLM RIQ GPVRGIS KLQE ERER+ +VP+ S ++ D+I VD+ T DML+ALG + IP +V Sbjct: 51 AGYTTHLMKRIQRGPVRGISFKLQEEERERKDQYVPEVSELEKDKINVDQDTKDMLKALGYDSIPTVV 118
BLAST of FC920949 vs. ExPASy Swiss-Prot
Match: RS17_SPOFR (40S ribosomal protein S17 OS=Spodoptera frugiperda GN=RpS17 PE=2 SV=3) HSP 1 Score: 82.0333 bits (201), Expect = 1.009e-15 Identity = 42/76 (55.26%), Postives = 53/76 (69.74%), Query Frame = 2 Query: 2 AGFSTHLMNRIQNGPVRGISLKLQEVERERRMDFVPDESAIKTDQIEVDKATLDMLEALGMNEIPGLVRVDPVAPG 229 AGF+THLM R+++ VRGIS+KLQE ERERR ++VP+ SA++ D IEVD T DML+ L N I GL P G Sbjct: 51 AGFATHLMRRLRHSQVRGISIKLQEEERERRDNYVPEVSALEHDIIEVDPDTKDMLKMLDFNNINGLQLTQPATQG 126
BLAST of FC920949 vs. ExPASy Swiss-Prot
Match: RS17_THEPA (40S ribosomal protein S17 OS=Theileria parva GN=RPS17 PE=3 SV=3) HSP 1 Score: 81.2629 bits (199), Expect = 1.720e-15 Identity = 41/67 (61.19%), Postives = 52/67 (77.61%), Query Frame = 2 Query: 2 AGFSTHLMNRIQNGPVRGISLKLQEVERERRMDFVPDESAIKTDQIEVDKATLDMLEALGMNEIPGL 202 AGF THLM RIQ GPVRGISLKLQE ERERRMD++P++S ++ I+VD+ T DML L ++ +P L Sbjct: 51 AGFITHLMRRIQKGPVRGISLKLQEEERERRMDYIPEKSELEVPVIQVDQDTADMLNFLKIS-LPNL 116
BLAST of FC920949 vs. ExPASy Swiss-Prot
Match: RS17_THEAN (40S ribosomal protein S17 OS=Theileria annulata GN=RPS17 PE=2 SV=3) HSP 1 Score: 81.2629 bits (199), Expect = 1.720e-15 Identity = 41/67 (61.19%), Postives = 52/67 (77.61%), Query Frame = 2 Query: 2 AGFSTHLMNRIQNGPVRGISLKLQEVERERRMDFVPDESAIKTDQIEVDKATLDMLEALGMNEIPGL 202 AGF THLM RIQ GPVRGISLKLQE ERERRMD++P++S ++ I+VD+ T DML L ++ +P L Sbjct: 51 AGFITHLMRRIQKGPVRGISLKLQEEERERRMDYIPEKSELEVPVIQVDQDTADMLNFLKIS-LPNL 116 The following BLAST results are available for this feature:
BLAST of FC920949 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 28
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >FC920949 ID=FC920949; Name=FC920949; organism=Citrus clementina; type=EST; length=242bpback to top |