FC920952

Overview
NameFC920952
Unique NameFC920952
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length694
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig814 contig Ccv1_Contig814:62..755. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920952 vs. ExPASy Swiss-Prot
Match: ASPR_CUCPE (Aspartic proteinase OS=Cucurbita pepo PE=2 SV=1)

HSP 1 Score: 273.092 bits (697), Expect = 9.882e-73
Identity = 125/166 (75.30%), Postives = 143/166 (86.14%), Query Frame = 3
Query:    3 ICSQIGLCTFDGSRDVSMGVESVVPENNHRASGGFHDAMCSTCEMAVVWMQNQLKQNQTQERILNYVNELCDRLPSPMGESAVDCSRLSSLPIVSFTIGGKIFDLTPDQYILKVGGGDAAQCISGFSALDVAPPRGPLWILGDVFMGPYHTVFDYSNMRVGFAEAA 500
            ICSQI LCTFDG+R VSMG+ESVV EN  ++S   HD MCS CEM VVWMQNQL+QNQT+ERI+NY+NELCDR+PSPMG+SAVDC +LSS+P VSFTIGGKIFDL P++YILKVG G  AQCISGF+A D+ PPRGPLWILGDVFMG YHTVFD+  +RVG AEAA
Sbjct:  348 ICSQINLCTFDGTRGVSMGIESVVDENAGKSSDSLHDGMCSVCEMTVVWMQNQLRQNQTKERIINYINELCDRMPSPMGQSAVDCGQLSSMPTVSFTIGGKIFDLAPEEYILKVGEGPVAQCISGFTAFDIPPPRGPLWILGDVFMGRYHTVFDFGKLRVGSAEAA 513          
BLAST of FC920952 vs. ExPASy Swiss-Prot
Match: ASPR_HORVU (Phytepsin OS=Hordeum vulgare PE=1 SV=1)

HSP 1 Score: 253.062 bits (645), Expect = 1.058e-66
Identity = 117/166 (70.48%), Postives = 139/166 (83.73%), Query Frame = 3
Query:    3 ICSQIGLCTFDGSRDVSMGVESVVPENNHRASGGFHDAMCSTCEMAVVWMQNQLKQNQTQERILNYVNELCDRLPSPMGESAVDCSRLSSLPIVSFTIGGKIFDLTPDQYILKVGGGDAAQCISGFSALDVAPPRGPLWILGDVFMGPYHTVFDYSNMRVGFAEAA 500
            ICSQ+GLCTFDG+R VS G+ SVV +   +++G   D MCS CEMAVVWMQNQL QN+TQ+ IL+YVN+LC+RLPSPMGESAVDC  L S+P + FTIGGK F L P++YILKVG G AAQCISGF+A+D+ PPRGPLWILGDVFMGPYHTVFDY  +R+GFA+AA
Sbjct:  343 ICSQVGLCTFDGTRGVSAGIRSVVDDEPVKSNGLRADPMCSACEMAVVWMQNQLAQNKTQDLILDYVNQLCNRLPSPMGESAVDCGSLGSMPDIEFTIGGKKFALKPEEYILKVGEGAAAQCISGFTAMDIPPPRGPLWILGDVFMGPYHTVFDYGKLRIGFAKAA 508          
BLAST of FC920952 vs. ExPASy Swiss-Prot
Match: ASPR1_ORYSJ (Aspartic proteinase oryzasin-1 OS=Oryza sativa subsp. japonica GN=Os05g0567100 PE=2 SV=2)

HSP 1 Score: 247.669 bits (631), Expect = 4.446e-65
Identity = 114/166 (68.67%), Postives = 137/166 (82.53%), Query Frame = 3
Query:    3 ICSQIGLCTFDGSRDVSMGVESVVPENNHRASGGFHDAMCSTCEMAVVWMQNQLKQNQTQERILNYVNELCDRLPSPMGESAVDCSRLSSLPIVSFTIGGKIFDLTPDQYILKVGGGDAAQCISGFSALDVAPPRGPLWILGDVFMGPYHTVFDYSNMRVGFAEAA 500
            ICSQ+GLCTFDG   VS G++SVV +    ++G     MC+ CEMAVVWMQNQL QN+TQ+ ILNY+N+LCD+LPSPMGES+VDC  L+S+P +SFTIGGK F L P++YILKVG G AAQCISGF+A+D+ PPRGPLWILGDVFMG YHTVFDY  MRVGFA++A
Sbjct:  344 ICSQVGLCTFDGKHGVSAGIKSVVDDEAGESNGLQSGPMCNACEMAVVWMQNQLAQNKTQDLILNYINQLCDKLPSPMGESSVDCGSLASMPEISFTIGGKKFALKPEEYILKVGEGAAAQCISGFTAMDIPPPRGPLWILGDVFMGAYHTVFDYGKMRVGFAKSA 509          
BLAST of FC920952 vs. ExPASy Swiss-Prot
Match: CYPR1_CYNCA (Cyprosin (Fragment) OS=Cynara cardunculus GN=CYPRO1 PE=1 SV=2)

HSP 1 Score: 240.35 bits (612), Expect = 7.098e-63
Identity = 112/166 (67.47%), Postives = 138/166 (83.13%), Query Frame = 3
Query:    3 ICSQIGLCTFDGSRDVSMGVESVVPENNHRASGGFHDAMCSTCEMAVVWMQNQLKQNQTQERILNYVNELCDRLPSPMGESAVDCSRLSSLPIVSFTIGGKIFDLTPDQYILKVGGGDAAQCISGFSALDVAPPRGPLWILGDVFMGPYHTVFDYSNMRVGFAEAA 500
            ICSQ+ LC+FDGS D SM +ESVV ++  ++SG      C  C   VVWMQNQ++QN+T+E I+NYV++LC+RLPSPMGESAVDCS LSS+P ++FT+GGK F+L+P+QY+LKVG G  AQCISGF+A+DVAPP GPLWILGDVFMG YHTVFDY N+RVGFAEAA
Sbjct:  310 ICSQMKLCSFDGSHDTSMIIESVVDKSKGKSSG--LPMRCVPCARWVVWMQNQIRQNETEENIINYVDKLCERLPSPMGESAVDCSSLSSMPNIAFTVGGKTFNLSPEQYVLKVGEGATAQCISGFTAMDVAPPHGPLWILGDVFMGQYHTVFDYGNLRVGFAEAA 473          
BLAST of FC920952 vs. ExPASy Swiss-Prot
Match: ASPRX_ORYSJ (Aspartic proteinase OS=Oryza sativa subsp. japonica GN=RAP PE=2 SV=2)

HSP 1 Score: 218.779 bits (556), Expect = 2.212e-56
Identity = 101/166 (60.84%), Postives = 127/166 (76.51%), Query Frame = 3
Query:    3 ICSQIGLCTFDGSRDVSMGVESVVPENNHRASGGFHDAMCSTCEMAVVWMQNQLKQNQTQERILNYVNELCDRLPSPMGESAVDCSRLSSLPIVSFTIGGKIFDLTPDQYILKVGGGDAAQCISGFSALDVAPPRGPLWILGDVFMGPYHTVFDYSNMRVGFAEAA 500
            +CSQ+GLC FDG R VS G+ESVV + N  +     DAMCS CEMAVVW++NQL++N+T+E ILNY N+LC+RLPSP GES V C ++S +P ++FTI  K F LTP+QYI+K+  G    CISGF A D+ PPRGPLWILGDVFMG YHTVFD+   R+GFA++A
Sbjct:  336 VCSQVGLCMFDGKRSVSNGIESVVDKENLGS-----DAMCSVCEMAVVWIENQLRENKTKELILNYANQLCERLPSPNGESTVSCHQISKMPNLAFTIANKTFILTPEQYIVKLEQGGQTVCISGFMAFDIPPPRGPLWILGDVFMGAYHTVFDFGKDRIGFAKSA 496          
BLAST of FC920952 vs. ExPASy Swiss-Prot
Match: CATD_MOUSE (Cathepsin D OS=Mus musculus GN=Ctsd PE=1 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.808e-24
Identity = 51/92 (55.43%), Postives = 64/92 (69.57%), Query Frame = 3
Query:  222 LPSPMGESAVDCSRLSSLPIVSFTIGGKIFDLTPDQYILKVGGGDAAQCISGFSALDVAPPRGPLWILGDVFMGPYHTVFDYSNMRVGFAEA 497
            +P   GE  + C ++SSLP V   +GGK ++L PD+YILKV  G    C+SGF  +D+ PP GPLWILGDVF+G Y+TVFD  N RVGFA A
Sbjct:  316 VPLIQGEYMIPCEKVSSLPTVYLKLGGKNYELHPDKYILKVSQGGKTICLSGFMGMDIPPPSGPLWILGDVFIGSYYTVFDRDNNRVGFANA 407          
BLAST of FC920952 vs. ExPASy Swiss-Prot
Match: CATD_CHIHA (Cathepsin D OS=Chionodraco hamatus GN=ctsd PE=1 SV=2)

HSP 1 Score: 111.309 bits (277), Expect = 4.973e-24
Identity = 51/91 (56.04%), Postives = 64/91 (70.33%), Query Frame = 3
Query:  225 PSPMGESAVDCSRLSSLPIVSFTIGGKIFDLTPDQYILKVGGGDAAQCISGFSALDVAPPRGPLWILGDVFMGPYHTVFDYSNMRVGFAEA 497
            P   GE  V+C  + SLP++SFT+GG+++ LT +QYILKV       C+SGF  LD+  P GPLWILGDVFMG Y+TVFD    RVGFA+A
Sbjct:  305 PLIQGEYMVNCDTVPSLPVISFTVGGQVYTLTGEQYILKVTQAGKTMCLSGFMGLDIPAPAGPLWILGDVFMGQYYTVFDRDANRVGFAKA 395          
BLAST of FC920952 vs. ExPASy Swiss-Prot
Match: CATD_CHICK (Cathepsin D OS=Gallus gallus GN=CTSD PE=1 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.447e-23
Identity = 49/90 (54.44%), Postives = 63/90 (70.00%), Query Frame = 3
Query:  225 PSPMGESAVDCSRLSSLPIVSFTIGGKIFDLTPDQYILKVGGGDAAQCISGFSALDVAPPRGPLWILGDVFMGPYHTVFDYSNMRVGFAE 494
            P   G+  + C ++SSLP+V+  +GGK + LT +QY+ KV       C+SGFS LDV PP GPLWILGDVF+GPY+TVFD  N  VGFA+
Sbjct:  307 PLIKGQYVISCDKISSLPVVTLMLGGKPYQLTGEQYVFKVSAQGETICLSGFSGLDVPPPGGPLWILGDVFIGPYYTVFDRDNDSVGFAK 396          
BLAST of FC920952 vs. ExPASy Swiss-Prot
Match: CATD_RAT (Cathepsin D OS=Rattus norvegicus GN=Ctsd PE=1 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.890e-23
Identity = 49/93 (52.69%), Postives = 67/93 (72.04%), Query Frame = 3
Query:  222 LPSPMGESAVDCSRLSSLPIVSFTIGGKIFDLTPDQYILKVGGGDAAQCISGFSALDVAPPRGPLWILGDVFMGPYHTVFDYSNMRVGFAEAA 500
            +P   GE  + C ++SSLPI++F +GG+ ++L P++YILKV       C+SGF  +D+ PP GPLWILGDVF+G Y+TVFD    RVGFA+AA
Sbjct:  313 VPLIQGEYMIPCEKVSSLPIITFKLGGQNYELHPEKYILKVSQAGKTICLSGFMGMDIPPPSGPLWILGDVFIGCYYTVFDREYNRVGFAKAA 405          
BLAST of FC920952 vs. ExPASy Swiss-Prot
Match: CATE_RANCA (Cathepsin E OS=Rana catesbeiana GN=CTSE PE=1 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 4.210e-23
Identity = 54/103 (52.43%), Postives = 70/103 (67.96%), Query Frame = 3
Query:  183 ERILNYVNELCDRLPSPMGESAVDCSRLSSLPIVSFTIGGKIFDLTPDQYILKVGGGDAAQCISGFSALDVAPPRGPLWILGDVFMGPYHTVFDYSNMRVGFA 491
            E++ NY+      + +  GE  V CS LS +P V+FTI G  + LTP+QY+L+ GGG    C SGF  LD++PP GPLWILGDVF+G Y++VFD  N RVGFA
Sbjct:  291 EQLQNYIG-----VTNTNGEYGVSCSTLSLMPSVTFTINGLDYSLTPEQYMLEDGGG---YCSSGFQGLDISPPSGPLWILGDVFIGQYYSVFDRGNNRVGFA 385          
The following BLAST results are available for this feature:
BLAST of FC920952 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 75
Match NameE-valueIdentityDescription
ASPR_CUCPE9.882e-7375.30Aspartic proteinase OS=Cucurbita pepo PE=2 SV=1[more]
ASPR_HORVU1.058e-6670.48Phytepsin OS=Hordeum vulgare PE=1 SV=1[more]
ASPR1_ORYSJ4.446e-6568.67Aspartic proteinase oryzasin-1 OS=Oryza sativa sub... [more]
CYPR1_CYNCA7.098e-6367.47Cyprosin (Fragment) OS=Cynara cardunculus GN=CYPRO... [more]
ASPRX_ORYSJ2.212e-5660.84Aspartic proteinase OS=Oryza sativa subsp. japonic... [more]
CATD_MOUSE3.808e-2455.43Cathepsin D OS=Mus musculus GN=Ctsd PE=1 SV=1[more]
CATD_CHIHA4.973e-2456.04Cathepsin D OS=Chionodraco hamatus GN=ctsd PE=1 SV... [more]
CATD_CHICK1.447e-2354.44Cathepsin D OS=Gallus gallus GN=CTSD PE=1 SV=1[more]
CATD_RAT1.890e-2352.69Cathepsin D OS=Rattus norvegicus GN=Ctsd PE=1 SV=1[more]
CATE_RANCA4.210e-2352.43Cathepsin E OS=Rana catesbeiana GN=CTSE PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC32201C05EF RVDevelopN Citrus clementina cDNA clone C32201C05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920952 ID=FC920952; Name=FC920952; organism=Citrus clementina; type=EST; length=694bp
TCATTTGCTCACAGATTGGTTTGTGCACATTTGATGGGTCTCGAGATGTG
AGTATGGGCGTTGAGAGTGTCGTTCCTGAGAATAATCATAGAGCATCTGG
TGGTTTCCATGATGCAATGTGCTCTACTTGTGAGATGGCAGTTGTGTGGA
TGCAGAACCAGCTCAAGCAGAACCAAACACAAGAGCGCATTCTTAACTAT
GTCAATGAGCTCTGTGATCGGTTGCCTAGTCCTATGGGAGAATCGGCTGT
TGACTGTAGCAGATTGTCTTCCTTGCCTATTGTTTCCTTTACGATTGGTG
GAAAGATATTTGACCTTACTCCTGATCAGTACATCCTCAAAGTGGGCGGG
GGAGATGCAGCTCAATGTATAAGTGGATTCTCAGCTCTAGATGTTGCCCC
ACCACGTGGACCTCTCTGGATCTTGGGGGATGTTTTTATGGGTCCCTACC
ACACAGTCTTTGACTACAGCAACATGAGAGTGGGATTTGCTGAAGCCGCG
TAAATAAGTTTGTTTTAAATATGCTCAGTGAACCGTACCTCGTGGAATTT
CAGTTGTTTCTTTAAGATGTTGAAACTAAACCTTAAATAACTGTTCTATG
TAAATGCTCTGATGTATGACAGCTGTTGAGAAGCCCAAAGACGTGGACTT
TGTTTATAATCCGTGCCTGGACTCTGAAAAAAAAAAAAAAAAAA
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