FC923091

Overview
NameFC923091
Unique NameFC923091
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length694
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14283 contig Ccv1_Contig14283:71..764. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC923091 vs. ExPASy Swiss-Prot
Match: CHLI_SOYBN (Magnesium-chelatase subunit chlI, chloroplastic OS=Glycine max GN=CHLI PE=2 SV=1)

HSP 1 Score: 305.449 bits (781), Expect = 1.812e-82
Identity = 166/221 (75.11%), Postives = 178/221 (80.54%), Query Frame = 2
Query:   32 MASVLGTRSSSAILASRPLXXXXXXXXXXXXXXXXXXGQNYGRRFYGGIGIEEKMGRALFAVTNVATEVNSVEQAQK-RSKESQRPVYPFTAIVGQEEMKLCLLLNVIDPKIGGVMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDPYNSDPEDPEAMGIEVRESVVKGEELSITFSKINMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLC*AKQRI 691
            MAS LGT SS A+L SR                    GQNYGR+FYGGIGI    GRA  +VTNVATEVNSVEQAQ   SKESQRPVYPF+AIVGQ+EMKLCLLLNVIDPKIGGVMIMGDRGTGKSTTVRSLVDLLP IKVV GDPYNSDP+DPE MG+EVRE V++GEELS+  +KINMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLL  A + I
Sbjct:    1 MASALGT-SSIAVLPSR--YFSSSSSKPSIHTLSLTSGQNYGRKFYGGIGIHGIKGRAQLSVTNVATEVNSVEQAQSIASKESQRPVYPFSAIVGQDEMKLCLLLNVIDPKIGGVMIMGDRGTGKSTTVRSLVDLLPEIKVVAGDPYNSDPQDPEFMGVEVRERVLQGEELSVVLTKINMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGI 218          
BLAST of FC923091 vs. ExPASy Swiss-Prot
Match: CHLI_TOBAC (Magnesium-chelatase subunit chlI, chloroplastic OS=Nicotiana tabacum GN=CHLI PE=2 SV=1)

HSP 1 Score: 268.855 bits (686), Expect = 1.880e-71
Identity = 148/225 (65.78%), Postives = 173/225 (76.89%), Query Frame = 2
Query:   32 MASVLGTRSSSA--ILASRPLXXXXXXXXXXXXXXXXXXGQNYGRRFYGGIGIEEKMGRALF--AVTNVATEVNSVE-QAQKRSKESQRPVYPFTAIVGQEEMKLCLLLNVIDPKIGGVMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDPYNSDPEDPEAMGIEVRESVVKGEELSITFSKINMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLC*AKQRI 691
            MAS+LGT SS+A  ILAS PL                  GQ+ GR+FYGGI +  K GR+ F  A++NVATE+N ++ + +   +ESQRPVYPF AIVGQ+EMKLCLLLNVIDPKIGGVMIMGDRGTGKSTTVRSLVDLLP IKV+ GDP+NSDP+D E M  EVR+ +  G++L I+ +KINMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLL  A + I
Sbjct:    1 MASLLGTSSSAAAAILASTPLSSRSCKPAVFSLFPSS--GQSQGRKFYGGIRVPVKKGRSQFHVAISNVATEINLLKNRVRNLLEESQRPVYPFAAIVGQDEMKLCLLLNVIDPKIGGVMIMGDRGTGKSTTVRSLVDLLPEIKVISGDPFNSDPDDQEVMSAEVRDKLRSGQQLPISRTKINMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGI 223          
BLAST of FC923091 vs. ExPASy Swiss-Prot
Match: CHLI_ARATH (Magnesium-chelatase subunit chlI, chloroplastic OS=Arabidopsis thaliana GN=CHLI PE=1 SV=1)

HSP 1 Score: 261.922 bits (668), Expect = 2.298e-69
Identity = 149/224 (66.52%), Postives = 166/224 (74.11%), Query Frame = 2
Query:   32 MASVLGTRSSSAILASRPLXXXXXXXXXXXXXXXXXXGQNYGRRFYGGIGIEEKMGRALF--AVTNVATEVNSVEQAQKR--SKESQRPVYPFTAIVGQEEMKLCLLLNVIDPKIGGVMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDPYNSDPEDPEAMGIEVRESVVKGEELSITFSKINMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLC*AKQRI 691
            MAS+LGT SSSAI AS  L                  G+ +G +   GI I  K  R+ +  +V NVATE+NS EQ   +  SK+S RPVYPF AIVGQ+EMKLCLLLNVIDPKIGGVMIMGDRGTGKSTTVRSLVDLLP I VV GDPYNSDP DPE MG+EVRE V KGE++ +  +KINMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLL  A + I
Sbjct:    1 MASLLGT-SSSAIWASPSLSSPSSKPSSSPICFRP--GKLFGSKLNAGIQIRPKKNRSRYHVSVMNVATEINSTEQVVGKFDSKKSARPVYPFAAIVGQDEMKLCLLLNVIDPKIGGVMIMGDRGTGKSTTVRSLVDLLPEINVVAGDPYNSDPIDPEFMGVEVRERVEKGEQVPVIATKINMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGI 221          
BLAST of FC923091 vs. ExPASy Swiss-Prot
Match: CHLI_CHLRE (Magnesium-chelatase subunit chlI, chloroplastic OS=Chlamydomonas reinhardtii GN=CHLI PE=2 SV=1)

HSP 1 Score: 214.927 bits (546), Expect = 3.221e-55
Identity = 110/163 (67.48%), Postives = 125/163 (76.69%), Query Frame = 2
Query:  203 ALFAVTNVATEVNSVEQAQKRSKESQRPVYPFTAIVGQEEMKLCLLLNVIDPKIGGVMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDPYNSDPEDPEAMGIEVRESVVKGEELSITFSKINMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLC*AKQRI 691
            AL      ATEV + E    +     RP++PFTAIVGQ+EMKL L+LNVIDPKIGGVMIMGDRGTGKSTT+R+L DLLP ++VV  DP+NSDP DPE M  EVR  V  GE+L ++  KI MVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLL  A + I
Sbjct:   50 ALLVRAAAATEVKAAEGRTGKELGQARPIFPFTAIVGQDEMKLALILNVIDPKIGGVMIMGDRGTGKSTTIRALADLLPEMQVVANDPFNSDPTDPELMSEEVRNRVKAGEQLPVSSKKIPMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGI 212          
BLAST of FC923091 vs. ExPASy Swiss-Prot
Match: CHLI_NEPOL (Magnesium-chelatase subunit chlI OS=Nephroselmis olivacea GN=chlI PE=3 SV=1)

HSP 1 Score: 213.386 bits (542), Expect = 9.372e-55
Identity = 110/142 (77.46%), Postives = 119/142 (83.80%), Query Frame = 2
Query:  266 SKESQRPVYPFTAIVGQEEMKLCLLLNVIDPKIGGVMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDPYNSDPEDPEAMGIEVRESVVKGEELSITFSKINMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLC*AKQRI 691
            + E  RPV+PFTAIVGQEEMKL LLLNVIDPKIGGVMIMGDRGTGKSTTVR+LVDLLP I+VV  DP+NS P DPE M  EVRE V +GE +  T +KI MVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLL  A + I
Sbjct:    7 TSEQARPVFPFTAIVGQEEMKLALLLNVIDPKIGGVMIMGDRGTGKSTTVRALVDLLPEIEVVENDPFNSHPYDPELMSDEVREKVHRGESIRTTTTKIPMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGI 148          
BLAST of FC923091 vs. ExPASy Swiss-Prot
Match: CHLI_CHLVU (Magnesium-chelatase subunit chlI OS=Chlorella vulgaris GN=chlI PE=3 SV=1)

HSP 1 Score: 212.616 bits (540), Expect = 1.599e-54
Identity = 109/144 (75.69%), Postives = 121/144 (84.03%), Query Frame = 2
Query:  260 KRSKESQRPVYPFTAIVGQEEMKLCLLLNVIDPKIGGVMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDPYNSDPEDPEAMGIEVRESVVKGEELSITFSKINMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLC*AKQRI 691
            + S E  RPV+PFTAIVGQEEMKL L+LNVIDPKIGGVMIMGDRGTGKSTTVR+LVDLLP I+VV  DP+NSDP+DPE M  EVR  + + E + IT  KI+MVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLL  A + I
Sbjct:    6 ENSLEQARPVFPFTAIVGQEEMKLALILNVIDPKIGGVMIMGDRGTGKSTTVRALVDLLPEIQVVADDPFNSDPKDPELMSQEVRGRLQRKETVPITTKKISMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGI 149          
BLAST of FC923091 vs. ExPASy Swiss-Prot
Match: CHLI_MESVI (Magnesium-chelatase subunit chlI OS=Mesostigma viride GN=chlI PE=3 SV=1)

HSP 1 Score: 206.453 bits (524), Expect = 1.146e-52
Identity = 102/152 (67.11%), Postives = 123/152 (80.92%), Query Frame = 2
Query:  236 VNSVEQAQKRSKESQRPVYPFTAIVGQEEMKLCLLLNVIDPKIGGVMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDPYNSDPEDPEAMGIEVRESVVKGEELSITFSKINMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLC*AKQRI 691
            +++++  +  +K  +RPVYPFTAIVGQEEMKL L+LNVIDP IGGVMIMGDRGTGKSTT+R+LVDLLP I+VV  DP+NSDP DP+ M  EVRE +   +E+    +KI +VDLPLGATEDRVCGTIDIE+AL EGVKAFEPGLL  A + I
Sbjct:    1 MSTIDLIKNVTKREERPVYPFTAIVGQEEMKLALILNVIDPDIGGVMIMGDRGTGKSTTIRALVDLLPEIEVVTNDPFNSDPRDPDLMSDEVREKINNKQEVPTIKTKIKIVDLPLGATEDRVCGTIDIERALNEGVKAFEPGLLAKANRGI 152          
BLAST of FC923091 vs. ExPASy Swiss-Prot
Match: CHLI_ANASP (Magnesium-chelatase subunit chlI OS=Anabaena sp. (strain PCC 7120) GN=chlI PE=3 SV=1)

HSP 1 Score: 205.297 bits (521), Expect = 2.552e-52
Identity = 103/139 (74.10%), Postives = 115/139 (82.73%), Query Frame = 2
Query:  275 SQRPVYPFTAIVGQEEMKLCLLLNVIDPKIGGVMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDPYNSDPEDPEAMGIEVRESVVKGEELSITFSKINMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLC*AKQRI 691
            ++R V+PFTAIVGQEEMKL LLLNVIDPKIGGVMIMGDRGTGKSTT+R+L DLLP I VV  DP+NSDP DP+ M  EVR+    G E+ I F K+ MVDLPLGATEDRVCGTIDIEKAL+EGVKAFEPGLL  A + I
Sbjct:   11 ARRVVFPFTAIVGQEEMKLALLLNVIDPKIGGVMIMGDRGTGKSTTIRALADLLPEIPVVANDPFNSDPSDPDLMSDEVRQKSGTGAEIPIEFKKVQMVDLPLGATEDRVCGTIDIEKALSEGVKAFEPGLLAKANRGI 149          
BLAST of FC923091 vs. ExPASy Swiss-Prot
Match: CHLI_CYAPA (Magnesium-chelatase subunit chlI OS=Cyanophora paradoxa GN=chlI PE=3 SV=2)

HSP 1 Score: 201.445 bits (511), Expect = 3.685e-51
Identity = 99/141 (70.21%), Postives = 114/141 (80.85%), Query Frame = 2
Query:  269 KESQRPVYPFTAIVGQEEMKLCLLLNVIDPKIGGVMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDPYNSDPEDPEAMGIEVRESVVKGEELSITFSKINMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLC*AKQRI 691
            K + RP++PFTAIVGQEEMKL LLLN++DPKIGGVMIMGDRGTGKSTT+R+L DLLP I +V  DP+NS P D E M   VR+    GEE+S+   K+ M+DLPLGATEDRVCGTIDIEKALTEGVKAFEPGLL  A + I
Sbjct:    2 KNNNRPIFPFTAIVGQEEMKLALLLNIVDPKIGGVMIMGDRGTGKSTTIRALADLLPEIDIVANDPFNSHPTDIELMSDNVRQLKENGEEISLIQKKVPMIDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAQANRGI 142          
BLAST of FC923091 vs. ExPASy Swiss-Prot
Match: CHLI_SYNY3 (Magnesium-chelatase subunit chlI OS=Synechocystis sp. (strain PCC 6803) GN=chlI PE=3 SV=2)

HSP 1 Score: 201.06 bits (510), Expect = 4.813e-51
Identity = 103/140 (73.57%), Postives = 115/140 (82.14%), Query Frame = 2
Query:  272 ESQRPVYPFTAIVGQEEMKLCLLLNVIDPKIGGVMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDPYNSDPEDPEAMGIEVRESVVKGEELSITFSKINMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLC*AKQRI 691
            +++R V+PFTAIVGQ+EMKL LLLNVIDPKIGGVMIMGDRGTGKSTT+R+L DLLP I+VV  DP+NS P DPE M  EVR  V   E LSI   K+ MVDLPLGATEDRVCGTIDIEKAL+EGVKAFEPGLL  A + I
Sbjct:   10 KTRRVVFPFTAIVGQDEMKLALLLNVIDPKIGGVMIMGDRGTGKSTTIRALADLLPEIEVVANDPFNSSPSDPEMMSEEVRIRVDSQEPLSIVKKKVTMVDLPLGATEDRVCGTIDIEKALSEGVKAFEPGLLAKANRGI 149          
The following BLAST results are available for this feature:
BLAST of FC923091 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 32
Match NameE-valueIdentityDescription
CHLI_SOYBN1.812e-8275.11Magnesium-chelatase subunit chlI, chloroplastic OS... [more]
CHLI_TOBAC1.880e-7165.78Magnesium-chelatase subunit chlI, chloroplastic OS... [more]
CHLI_ARATH2.298e-6966.52Magnesium-chelatase subunit chlI, chloroplastic OS... [more]
CHLI_CHLRE3.221e-5567.48Magnesium-chelatase subunit chlI, chloroplastic OS... [more]
CHLI_NEPOL9.372e-5577.46Magnesium-chelatase subunit chlI OS=Nephroselmis o... [more]
CHLI_CHLVU1.599e-5475.69Magnesium-chelatase subunit chlI OS=Chlorella vulg... [more]
CHLI_MESVI1.146e-5267.11Magnesium-chelatase subunit chlI OS=Mesostigma vir... [more]
CHLI_ANASP2.552e-5274.10Magnesium-chelatase subunit chlI OS=Anabaena sp. (... [more]
CHLI_CYAPA3.685e-5170.21Magnesium-chelatase subunit chlI OS=Cyanophora par... [more]
CHLI_SYNY34.813e-5173.57Magnesium-chelatase subunit chlI OS=Synechocystis ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC31701A02EF StrClemenN Citrus clementina cDNA clone C31701A02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923091 ID=FC923091; Name=FC923091; organism=Citrus clementina; type=EST; length=694bp
GGAACAGTAACACTTACATTTGCGCACGGGCATGGCGTCCGTGTTAGGAA
CTCGTTCTTCCTCTGCAATCTTGGCTTCTCGCCCTCTCTCTTTTCCAGCA
TCAAACTCAAAGTCTGCCATCTCCTCTCTCTCCTTAAACCCCGGGCAGAA
TTATGGAAGGAGGTTTTATGGGGGGATTGGGATTGAAGAAAAGATGGGGC
GGGCTCTGTTTGCAGTTACCAATGTTGCCACTGAGGTTAACTCTGTTGAG
CAGGCCCAGAAGAGATCCAAGGAAAGCCAGAGGCCGGTGTATCCATTTAC
TGCAATAGTGGGACAGGAAGAGATGAAATTGTGCCTTTTGTTAAATGTGA
TTGATCCCAAAATTGGTGGTGTTATGATTATGGGTGATAGAGGAACGGGG
AAATCCACCACTGTTAGGTCCTTGGTAGATTTACTCCCCGTAATCAAGGT
AGTTGTCGGTGACCCATATAACTCAGATCCAGAAGATCCAGAGGCCATGG
GTATTGAAGTCAGAGAGTCTGTCGTGAAAGGGGAGGAGCTCTCCATTACA
TTCAGTAAAATCAACATGGTTGATTTGCCATTGGGTGCTACAGAAGACAG
GGTCTGTGGGACGATTGACATTGAGAAAGCTCTAACGGAAGGTGTCAAAG
CATTTGAGCCTGGCCTTCTTTGCTAAGCTAAACAGAGAATTTCT
back to top