FC923097

Overview
NameFC923097
Unique NameFC923097
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length698
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of FC923097 vs. ExPASy Swiss-Prot
Match: NIFU3_ARATH (NifU-like protein 3, chloroplastic OS=Arabidopsis thaliana GN=NIFU3 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.185e-18
Identity = 41/43 (95.35%), Postives = 42/43 (97.67%), Query Frame = 1 
Query:  505 CVLPLTEENVERVLDEVRPGLMADGGNVALHEIDGLVVVLKLQ 633
            CV+PLTEENVERVLDEVRP LMADGGNVALHEIDGLVVVLKLQ
Sbjct:   80 CVMPLTEENVERVLDEVRPSLMADGGNVALHEIDGLVVVLKLQ 122

HSP 2 Score: 26.5646 bits (57), Expect = 5.185e-18
Identity = 9/14 (64.29%), Postives = 13/14 (92.86%), Query Frame = 3 
Query:  621 IEVTGACGSCPSST 662
            +++ GACGSCPSS+
Sbjct:  119 LKLQGACGSCPSSS 132

HSP 3 Score: 20.4014 bits (41), Expect = 5.185e-18
Identity = 8/10 (80.00%), Postives = 10/10 (100.00%), Query Frame = 2 
Query:  659 NMTLKMGIET 688
            +MTLKMGIE+
Sbjct:  132 SMTLKMGIES 141
[Close]
BLAST of FC923097 vs. ExPASy Swiss-Prot
Match: NIFU2_ARATH (NifU-like protein 2, chloroplastic OS=Arabidopsis thaliana GN=NIFU2 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.320e-13
Identity = 33/45 (73.33%), Postives = 38/45 (84.44%), Query Frame = 1 
Query:  499 PCCVLPLTEENVERVLDEVRPGLMADGGNVALHEIDGLVVVLKLQ 633
            P   +PLTEENVE VLDE+RP LM+DGGNVALHEIDG +V +KLQ
Sbjct:   79 PILEVPLTEENVESVLDEIRPYLMSDGGNVALHEIDGNIVRVKLQ 123

HSP 2 Score: 28.4906 bits (62), Expect = 1.320e-13
Identity = 10/14 (71.43%), Postives = 13/14 (92.86%), Query Frame = 3 
Query:  621 IEVTGACGSCPSST 662
            +++ GACGSCPSST
Sbjct:  120 VKLQGACGSCPSST 133
The following BLAST results are available for this feature:
BLAST of FC923097 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
NIFU3_ARATH5.185e-1895.35NifU-like protein 3, chloroplastic OS=Arabidopsis ... [more]
NIFU2_ARATH1.320e-1373.33NifU-like protein 2, chloroplastic OS=Arabidopsis ... [more]
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Properties
Property NameValue
Genbank descriptionC31701A10EF StrClemenN Citrus clementina cDNA clone C31701A10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923097 ID=FC923097; Name=FC923097; organism=Citrus clementina; type=EST; length=698bp
GAACGTGGCTTCATTCCTTTCTCAATCTTATAGACTATGATCATAAGATT
AAGCCCGTAAATTCTATCCACAAATTTGGAGCACAGTTGGCAGATTTCCT
TTATCATCATCTTCAACTAATACAGCATATCTACCATGCAAAAAAAAAAC
CAACAAGGTTAAAAAATTAAAAACAAAGACAAGAATTAAGTTCCCATTTG
GTTTTGCTGCCGAAGTTTTGTGGCAGCGCCATTCTAGTTTCATGGGGTGT
CATTGCTTTTCATTATAAAGCAGAGGAATATGGGGGCGCTTTCAACTCAA
ACTCAAGGTCTCAAAGCATCATCAACTGCAATTCTCAACCAAAATTTTTC
TTTTTCGGAAAAAACATCAGCTTCTTTCCGTTTATCACTGTTTAAGAATC
CCATTTCTGATTTCAGTGGTTTTTCTTCAAAACAAAGCTCTTTTCTTGGA
TTTAGTTTGAACCATGTTCGGAGAAAGCATAGAGGACTTGTTGTTTCACC
ATGCTGCGTCCTGCCGTTAACTGAAGAGAATGTGGAGAGAGTGTTGGATG
AGGTACGACCTGGCTTGATGGCTGATGGGGGCAATGTGGCTTTGCATGAG
ATAGATGGCCTTGTTGTGGTATTGAAGTTACAGGAGCATGTGGATCCTGT
CCAAGCTCAACATGACACTAAAGATGGGAATTGAAACAGGCTTCGGGA
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