FC923099
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC923099 vs. ExPASy Swiss-Prot
Match: MSIR6_DROME (RNA-binding protein Musashi homolog Rbp6 OS=Drosophila melanogaster GN=Rbp6 PE=1 SV=3) HSP 1 Score: 144.821 bits (364), Expect = 3.816e-34 Identity = 68/146 (46.58%), Postives = 103/146 (70.55%), Query Frame = 2 Query: 200 PGKIFIGGLARETSPAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVI-EDTHIINGKQVEIKRTIPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITFDTEQAVD 634 PGK+FIGGL+ +TSP +FG+YG+I+++++MKD T + RGFGFVT++DP+ VDKV+ + TH ++GK+V+ K P+ A +TKKIFVGG+ + ++ K +F QFG +++ +M D T+R RGFGF+TF +E VD Sbjct: 28 PGKMFIGGLSWQTSPESLRDYFGRYGDISEAMVMKDPTTRRSRGFGFVTFSDPNSVDKVLTQGTHELDGKKVDPKVAFPRRAHPKMVTRTKKIFVGGLSAPTTLEDVKSYFEQFGPIEDAMLMFDKQTNRHRGFGFVTFQSEDVVD 173 HSP 2 Score: 69.707 bits (169), Expect = 1.560e-11 Identity = 36/78 (46.15%), Postives = 50/78 (64.10%), Query Frame = 2 Query: 206 KIFIGGLARETSPAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIE-DTHIINGKQVEIKRTIPK 436 KIF+GGL+ T+ +F ++G I D+++M D++T + RGFGFVT+ VVDKV E H IN K VE K+ PK Sbjct: 119 KIFVGGLSAPTTLEDVKSYFEQFGPIEDAMLMFDKQTNRHRGFGFVTFQSEDVVDKVCEIHFHEINNKMVECKKAQPK 196
BLAST of FC923099 vs. ExPASy Swiss-Prot
Match: HRP1_YEAST (Nuclear polyadenylated RNA-binding protein 4 OS=Saccharomyces cerevisiae GN=HRP1 PE=1 SV=1) HSP 1 Score: 140.198 bits (352), Expect = 9.399e-33 Identity = 69/143 (48.25%), Postives = 98/143 (68.53%), Query Frame = 2 Query: 206 KIFIGGLARETSPAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDTHIINGKQVEIKRTIPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITFDTEQAVD 634 K+FIGGL +T+ ++FGKYG +TD IMKD TG+ RGFGF+++ PS VD+V++ HI++GK ++ KR IP+ + KT KIFVGGI V EF++FF Q+G + + Q+M D T +SRGFGF+T+D+ AVD Sbjct: 160 KMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKTQHILDGKVIDPKRAIPR----DEQDKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVD 298 HSP 2 Score: 72.7886 bits (177), Expect = 1.843e-12 Identity = 34/79 (43.04%), Postives = 51/79 (64.56%), Query Frame = 2 Query: 203 GKIFIGGLARETSPAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDTHI-INGKQVEIKRTIPK 436 GKIF+GG+ + P +F + F ++G I D+ +M D+ TGQ RGFGFVTY VD+V ++ I +++EIKR P+ Sbjct: 243 GKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQNKFIDFKDRKIEIKRAEPR 321
BLAST of FC923099 vs. ExPASy Swiss-Prot
Match: YHKF_SCHPO (Uncharacterized RNA-binding protein C660.15 OS=Schizosaccharomyces pombe GN=SPBC660.15 PE=2 SV=1) HSP 1 Score: 135.961 bits (341), Expect = 1.773e-31 Identity = 64/158 (40.51%), Postives = 100/158 (63.29%), Query Frame = 2 Query: 161 DDRSQPHTGDGASPGKIFIGGLARETSPAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDTHIINGKQVEIKRTIPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITFDTEQAVD 634 +D ++ + GK+FIGGL ET+ +F ++GE+ D +M+D TG+ RGFGF+T+ +P V++V+ H ++GK ++ KR IP+ + KT K+FVGG+P E+EF++FF QFG V + +M D T R RGFGF+T++ E AV+ Sbjct: 149 EDNAEETSPFNREDGKMFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNPKCVNEVMSKEHHLDGKIIDPKRAIPR----EEQEKTAKMFVGGVPGDCTEEEFRNFFNQFGRVLDATLMMDKDTGRPRGFGFVTYENESAVE 302 HSP 2 Score: 75.8702 bits (185), Expect = 2.177e-13 Identity = 37/107 (34.58%), Postives = 61/107 (57.01%), Query Frame = 2 Query: 140 SSDHHPEDDRSQPHTG----DGASPGKIFIGGLARETSPAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDTHI-INGKQVEIKRTIPKGAV 445 S +HH + P + K+F+GG+ + + +F F ++G + D+ +M D+ TG+PRGFGFVTY + S V+ + +I I+GK VE+KR PK ++ Sbjct: 222 SKEHHLDGKIIDPKRAIPREEQEKTAKMFVGGVPGDCTEEEFRNFFNQFGRVLDATLMMDKDTGRPRGFGFVTYENESAVEATMSQPYITIHGKPVEVKRATPKASL 328
BLAST of FC923099 vs. ExPASy Swiss-Prot
Match: MSI2H_MOUSE (RNA-binding protein Musashi homolog 2 OS=Mus musculus GN=Msi2 PE=1 SV=1) HSP 1 Score: 135.961 bits (341), Expect = 1.773e-31 Identity = 65/146 (44.52%), Postives = 100/146 (68.49%), Query Frame = 2 Query: 200 PGKIFIGGLARETSPAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVI-EDTHIINGKQVEIKRTIPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITFDTEQAVD 634 PGK+FIGGL+ +TSP +F K+GEI + ++M+D T + RGFGFVT+ADP+ VDKV+ + H ++ K ++ K P+ A +TKKIFVGG+ ++ ++ K +F QFG+V++ +M D +T+R RGFGF+TF+ E V+ Sbjct: 20 PGKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQPHHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVE 165 HSP 2 Score: 68.1662 bits (165), Expect = 4.539e-11 Identity = 34/78 (43.59%), Postives = 51/78 (65.38%), Query Frame = 2 Query: 206 KIFIGGLARETSPAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIE-DTHIINGKQVEIKRTIPK 436 KIF+GGL+ T ++F ++G++ D+++M D+ T + RGFGFVT+ + VV+KV E H IN K VE K+ PK Sbjct: 111 KIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECKKAQPK 188
BLAST of FC923099 vs. ExPASy Swiss-Prot
Match: MSI2H_HUMAN (RNA-binding protein Musashi homolog 2 OS=Homo sapiens GN=MSI2 PE=1 SV=1) HSP 1 Score: 135.961 bits (341), Expect = 1.773e-31 Identity = 65/146 (44.52%), Postives = 100/146 (68.49%), Query Frame = 2 Query: 200 PGKIFIGGLARETSPAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVI-EDTHIINGKQVEIKRTIPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITFDTEQAVD 634 PGK+FIGGL+ +TSP +F K+GEI + ++M+D T + RGFGFVT+ADP+ VDKV+ + H ++ K ++ K P+ A +TKKIFVGG+ ++ ++ K +F QFG+V++ +M D +T+R RGFGF+TF+ E V+ Sbjct: 20 PGKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQPHHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVE 165 HSP 2 Score: 68.1662 bits (165), Expect = 4.539e-11 Identity = 34/78 (43.59%), Postives = 51/78 (65.38%), Query Frame = 2 Query: 206 KIFIGGLARETSPAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIE-DTHIINGKQVEIKRTIPK 436 KIF+GGL+ T ++F ++G++ D+++M D+ T + RGFGFVT+ + VV+KV E H IN K VE K+ PK Sbjct: 111 KIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECKKAQPK 188
BLAST of FC923099 vs. ExPASy Swiss-Prot
Match: RB27C_DROME (Heterogeneous nuclear ribonucleoprotein 27C OS=Drosophila melanogaster GN=Hrb27C PE=1 SV=2) HSP 1 Score: 124.79 bits (312), Expect = 4.086e-28 Identity = 58/145 (40.00%), Postives = 99/145 (68.28%), Query Frame = 2 Query: 203 GKIFIGGLARETSPAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIED-THIINGKQVEIKRTIPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITFDTEQAVD 634 GK+F+GGL+ ET+ ++F ++G+I D V+MK+ ++G+ RGFGFVT+ADP+ V+ V+++ H ++G+ ++ K P+ K K+F+GG+PS+V E + + FF ++G+V E IM D +SRGFGF++F+ E +V+ Sbjct: 7 GKLFVGGLSWETTQENLSRYFCRFGDIIDCVVMKNNESGRSRGFGFVTFADPTNVNHVLQNGPHTLDGRTIDPKPCNPRTLQKPKKGGGYKVFLGGLPSNVTETDLRTFFNRYGKVTEVVIMYDQEKKKSRGFGFLSFEEESSVE 151 HSP 2 Score: 68.5514 bits (166), Expect = 3.475e-11 Identity = 35/96 (36.46%), Postives = 58/96 (60.42%), Query Frame = 2 Query: 173 QPHTGDGASPGKIFIGGLARETSPAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDTHI-INGKQVEIKRTIPKGAVGSKD 457 +P G G K+F+GGL + F +YG++T+ VIM D++ + RGFGF+++ + S V+ V + +I +NGKQVEIK+ P+ G ++ Sbjct: 89 KPKKGGGY---KVFLGGLPSNVTETDLRTFFNRYGKVTEVVIMYDQEKKKSRGFGFLSFEEESSVEHVTNERYINLNGKQVEIKKAEPRDGSGGQN 181
BLAST of FC923099 vs. ExPASy Swiss-Prot
Match: MSI1H_HUMAN (RNA-binding protein Musashi homolog 1 OS=Homo sapiens GN=MSI1 PE=1 SV=1) HSP 1 Score: 124.79 bits (312), Expect = 4.086e-28 Identity = 64/163 (39.26%), Postives = 102/163 (62.58%), Query Frame = 2 Query: 158 EDDRSQPHTGDGASPG---KIFIGGLARETSPAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVI-EDTHIINGKQVEIKRTIPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITFDTEQAVD 634 E D QP SP K+FIGGL+ +T+ ++FG++GE+ + ++M+D T + RGFGFVT+ D + VDKV+ + H ++ K ++ K P+ A +TKKIFVGG+ + ++ K +F QFG+V + +M D +T+R RGFGF+TF++E V+ Sbjct: 2 ETDAPQPGLASPDSPHDPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVE 164 HSP 2 Score: 67.781 bits (164), Expect = 5.928e-11 Identity = 33/78 (42.31%), Postives = 51/78 (65.38%), Query Frame = 2 Query: 206 KIFIGGLARETSPAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIE-DTHIINGKQVEIKRTIPK 436 KIF+GGL+ T+ ++F ++G++ D+++M D+ T + RGFGFVT+ +V+KV E H IN K VE K+ PK Sbjct: 110 KIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKAQPK 187
BLAST of FC923099 vs. ExPASy Swiss-Prot
Match: MSI1H_RAT (RNA-binding protein Musashi homolog 1 OS=Rattus norvegicus GN=Msi1 PE=2 SV=1) HSP 1 Score: 124.405 bits (311), Expect = 5.337e-28 Identity = 64/163 (39.26%), Postives = 102/163 (62.58%), Query Frame = 2 Query: 158 EDDRSQPHTGDGASPG---KIFIGGLARETSPAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVI-EDTHIINGKQVEIKRTIPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITFDTEQAVD 634 E D QP SP K+FIGGL+ +T+ ++FG++GE+ + ++M+D T + RGFGFVT+ D + VDKV+ + H ++ K ++ K P+ A +TKKIFVGG+ + ++ K +F QFG+V + +M D +T+R RGFGF+TF++E V+ Sbjct: 2 ETDAPQPGLASPDSPHDPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVE 164
BLAST of FC923099 vs. ExPASy Swiss-Prot
Match: MSI1H_MOUSE (RNA-binding protein Musashi homolog 1 OS=Mus musculus GN=Msi1 PE=1 SV=1) HSP 1 Score: 124.405 bits (311), Expect = 5.337e-28 Identity = 64/163 (39.26%), Postives = 102/163 (62.58%), Query Frame = 2 Query: 158 EDDRSQPHTGDGASPG---KIFIGGLARETSPAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVI-EDTHIINGKQVEIKRTIPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITFDTEQAVD 634 E D QP SP K+FIGGL+ +T+ ++FG++GE+ + ++M+D T + RGFGFVT+ D + VDKV+ + H ++ K ++ K P+ A +TKKIFVGG+ + ++ K +F QFG+V + +M D +T+R RGFGF+TF++E V+ Sbjct: 2 ETDAPQPGLASPDSPHDPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVE 164
BLAST of FC923099 vs. ExPASy Swiss-Prot
Match: DAZP1_HUMAN (DAZ-associated protein 1 OS=Homo sapiens GN=DAZAP1 PE=1 SV=1) HSP 1 Score: 122.865 bits (307), Expect = 1.553e-27 Identity = 65/159 (40.88%), Postives = 92/159 (57.86%), Query Frame = 2 Query: 203 GKIFIGGLARETSPAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIED-THIINGKQVEIKRTIPKG--------------AVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITFDTEQAVD 634 GK+F+GGL T+ +F +YGE+ D VIMKD+ T Q RGFGFV + DP+ V V+ H ++G+ ++ K P+G S + K+ KIFVGGIP + E E +++F +FG V E ++ D R RGFGFITF+ EQ+VD Sbjct: 10 GKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDNSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVD 168 HSP 2 Score: 68.9366 bits (167), Expect = 2.661e-11 Identity = 34/101 (33.66%), Postives = 58/101 (57.43%), Query Frame = 2 Query: 158 EDDRSQPHTG-------DGASPGKIFIGGLARETSPAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIE-DTHIINGKQVEIKRTIPK 436 + +R++P G D + KIF+GG+ + ++F K+G +T+ V++ D + +PRGFGF+T+ D VD+ + H I GK+VE+KR P+ Sbjct: 91 QPERTRPKEGWQKGPRSDNSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRAEPR 191 The following BLAST results are available for this feature:
BLAST of FC923099 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 109
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >FC923099 ID=FC923099; Name=FC923099; organism=Citrus clementina; type=EST; length=671bpback to top |