FC923107

Overview
NameFC923107
Unique NameFC923107
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length722
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14272 contig Ccv1_Contig14272:67..789. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC923107 vs. ExPASy Swiss-Prot
Match: RSP41_ARATH (Arginine/serine-rich-splicing factor RSP41 OS=Arabidopsis thaliana GN=RSP41 PE=1 SV=2)

HSP 1 Score: 270.396 bits (690), Expect = 6.274e-74
Identity = 131/178 (73.60%), Postives = 150/178 (84.27%), Query Frame = 2
Query:   44 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTKHEXXXXXXXXXXXXXXXXTNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVRDDDDRRNGH 577
            M+P+FCGNFEYDAR+SDLERLFR+YGKV+RVDMK+GFAF+YM+DERDAEDAIR LDR E+GR GRRLRVEWTK++                +  RPSKTLFVINFD  +TRTRDLERHFEPYGKI++VRIRRNFAF+QYE QEDATRALDATN SKL D+VISVEYAV+DDD R NG+
Sbjct:    1 MKPVFCGNFEYDARESDLERLFRKYGKVERVDMKAGFAFVYMEDERDAEDAIRALDRFEYGRTGRRLRVEWTKNDRGGAGRSGGSRRSS--SGLRPSKTLFVINFDAQNTRTRDLERHFEPYGKIVNVRIRRNFAFIQYEAQEDATRALDATNSSKLMDKVISVEYAVKDDDSRGNGY 176          

HSP 2 Score: 28.8758 bits (63), Expect = 6.274e-74
Identity = 11/13 (84.62%), Postives = 11/13 (84.62%), Query Frame = 1
Query:  682 PKSYRRERGSPDY 720
            P  YRRERGSPDY
Sbjct:  193 PSPYRRERGSPDY 205          
BLAST of FC923107 vs. ExPASy Swiss-Prot
Match: RSP40_ARATH (Arginine/serine-rich-splicing factor RSP40 OS=Arabidopsis thaliana GN=RSP40 PE=1 SV=2)

HSP 1 Score: 270.781 bits (691), Expect = 1.067e-73
Identity = 132/178 (74.16%), Postives = 150/178 (84.27%), Query Frame = 2
Query:   44 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTKHEXXXXXXXXXXXXXXXXTNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVRDDDDRRNGH 577
            M+P+FCGNFEYDAR+ DLERLFR+YGKV+RVDMK+GFAF+YM+DERDAEDAIR LDR EFGRKGRRLRVEWTK E                ++ RPSKTLFVINFD  +TRTRDLE+HFEPYGKI++VRIRRNFAF+QYE QEDATRALDA+N SKL D+VISVEYAV+DDD R NGH
Sbjct:    1 MKPVFCGNFEYDAREGDLERLFRKYGKVERVDMKAGFAFVYMEDERDAEDAIRALDRFEFGRKGRRLRVEWTKSERGGDKRSGGGSRRSS-SSMRPSKTLFVINFDADNTRTRDLEKHFEPYGKIVNVRIRRNFAFIQYEAQEDATRALDASNNSKLMDKVISVEYAVKDDDARGNGH 177          

HSP 2 Score: 27.7202 bits (60), Expect = 1.067e-73
Identity = 10/13 (76.92%), Postives = 11/13 (84.62%), Query Frame = 1
Query:  682 PKSYRRERGSPDY 720
            P  Y+RERGSPDY
Sbjct:  194 PSPYKRERGSPDY 206          
BLAST of FC923107 vs. ExPASy Swiss-Prot
Match: RSP31_ARATH (Arginine/serine-rich-splicing factor RSP31 OS=Arabidopsis thaliana GN=RSP31 PE=1 SV=2)

HSP 1 Score: 231.106 bits (588), Expect = 4.618e-60
Identity = 113/179 (63.13%), Postives = 138/179 (77.09%), Query Frame = 2
Query:   44 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTKHEXXXXXXXXXXXXXXXXTNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVRDDDDR--RNG 574
            MRP+F GNFEY+ RQSDLERLF +YG+VDRVDMKSG+AF+Y +DERDAEDAIR LD   FG + RRL VEW K E                +N +P+KTLFVINFDP  T+  D+E+HFEPYGK+ +VRIRRNF+FVQ+E QEDAT+AL+AT  SK+ DRV+SVEYA++DDD+R  RNG
Sbjct:    1 MRPVFVGNFEYETRQSDLERLFDKYGRVDRVDMKSGYAFVYFEDERDAEDAIRKLDNFPFGYEKRRLSVEWAKGERGRPRGDAKAP-----SNLKPTKTLFVINFDPIRTKEHDIEKHFEPYGKVTNVRIRRNFSFVQFETQEDATKALEATQRSKILDRVVSVEYALKDDDERDDRNG 174          
BLAST of FC923107 vs. ExPASy Swiss-Prot
Match: RBM4_MACFA (RNA-binding protein 4 OS=Macaca fascicularis GN=RBM4 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.780e-11
Identity = 47/165 (28.48%), Postives = 80/165 (48.48%), Query Frame = 2
Query:   44 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTKHEXXXXXXXXXXXXXXXXTNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVE 538
            M  +F GN   +A + ++  LF +YGKV   D+   + F++++D+  AEDAIR L    +   G  + VE +K++                  ++ S  L V N  P  T  ++L   FE YG +I   I +++AFV  E  EDA  A+   + ++   + + V+
Sbjct:    1 MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLH--HYKLHGVNINVEASKNK------------------SKTSTKLHVGNISPTCT-NKELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQ 144          
BLAST of FC923107 vs. ExPASy Swiss-Prot
Match: RBM4_HUMAN (RNA-binding protein 4 OS=Homo sapiens GN=RBM4 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.780e-11
Identity = 47/165 (28.48%), Postives = 80/165 (48.48%), Query Frame = 2
Query:   44 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTKHEXXXXXXXXXXXXXXXXTNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVE 538
            M  +F GN   +A + ++  LF +YGKV   D+   + F++++D+  AEDAIR L    +   G  + VE +K++                  ++ S  L V N  P  T  ++L   FE YG +I   I +++AFV  E  EDA  A+   + ++   + + V+
Sbjct:    1 MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLH--HYKLHGVNINVEASKNK------------------SKTSTKLHVGNISPTCT-NKELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQ 144          
BLAST of FC923107 vs. ExPASy Swiss-Prot
Match: RBM4_BOVIN (RNA-binding protein 4 OS=Bos taurus GN=RBM4 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.780e-11
Identity = 47/165 (28.48%), Postives = 80/165 (48.48%), Query Frame = 2
Query:   44 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTKHEXXXXXXXXXXXXXXXXTNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVE 538
            M  +F GN   +A + ++  LF +YGKV   D+   + F++++D+  AEDAIR L    +   G  + VE +K++                  ++ S  L V N  P  T  ++L   FE YG +I   I +++AFV  E  EDA  A+   + ++   + + V+
Sbjct:    1 MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLH--HYKLHGVNINVEASKNK------------------SKTSTKLHVGNISPTCT-NKELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQ 144          
BLAST of FC923107 vs. ExPASy Swiss-Prot
Match: RSP3_CAEEL (Probable splicing factor, arginine/serine-rich 3 OS=Caenorhabditis elegans GN=rsp-3 PE=1 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 2.324e-11
Identity = 34/74 (45.95%), Postives = 50/74 (67.57%), Query Frame = 2
Query:   53 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSG----FAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTK 262
            ++ GN   D R+ ++E +F +YG++  VD+KSG    FAF+  +D RDAEDA+R  D  EF   GRR+RVE+T+
Sbjct:   11 VYVGNLPGDVREKEVEDIFHKYGRIKYVDIKSGRGPAFAFVEFEDHRDAEDAVRARDGYEF--DGRRIRVEFTR 82          
BLAST of FC923107 vs. ExPASy Swiss-Prot
Match: RBM4_RABIT (RNA-binding protein 4 OS=Oryctolagus cuniculus GN=RBM4 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.324e-11
Identity = 47/165 (28.48%), Postives = 80/165 (48.48%), Query Frame = 2
Query:   44 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTKHEXXXXXXXXXXXXXXXXTNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVE 538
            M  +F GN   +A + ++  LF +YGKV   D+   + F++++D+  AEDAIR L    +   G  + VE +K++                  ++ S  L V N  P  T  ++L   FE YG +I   I +++AFV  E  EDA  A+   + ++   + + V+
Sbjct:    1 MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLH--HYKLHGVNINVEASKNK------------------SKASTKLHVGNISPTCT-NQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQ 144          
BLAST of FC923107 vs. ExPASy Swiss-Prot
Match: RBM4_MOUSE (RNA-binding protein 4 OS=Mus musculus GN=Rbm4 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.324e-11
Identity = 47/165 (28.48%), Postives = 80/165 (48.48%), Query Frame = 2
Query:   44 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTKHEXXXXXXXXXXXXXXXXTNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVE 538
            M  +F GN   +A + ++  LF +YGKV   D+   + F++++D+  AEDAIR L    +   G  + VE +K++                  ++ S  L V N  P  T  ++L   FE YG +I   I +++AFV  E  EDA  A+   + ++   + + V+
Sbjct:    1 MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLH--HYKLHGVNINVEASKNK------------------SKASTKLHVGNISPTCT-NQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQ 144          
BLAST of FC923107 vs. ExPASy Swiss-Prot
Match: RBM4B_RAT (RNA-binding protein 4B OS=Rattus norvegicus GN=Rbm4b PE=2 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 2.324e-11
Identity = 47/165 (28.48%), Postives = 80/165 (48.48%), Query Frame = 2
Query:   44 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTKHEXXXXXXXXXXXXXXXXTNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVE 538
            M  +F GN   +A + ++  LF +YGKV   D+   + F++++D+  AEDAIR L    +   G  + VE +K++                  ++ S  L V N  P  T  ++L   FE YG +I   I +++AFV  E  EDA  A+   + ++   + + V+
Sbjct:    1 MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLH--HYKLHGVNINVEASKNK------------------SKASTKLHVGNISPTCT-NQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQ 144          
The following BLAST results are available for this feature:
BLAST of FC923107 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
RSP41_ARATH6.274e-7473.60Arginine/serine-rich-splicing factor RSP41 OS=Arab... [more]
RSP40_ARATH1.067e-7374.16Arginine/serine-rich-splicing factor RSP40 OS=Arab... [more]
RSP31_ARATH4.618e-6063.13Arginine/serine-rich-splicing factor RSP31 OS=Arab... [more]
RBM4_MACFA1.780e-1128.48RNA-binding protein 4 OS=Macaca fascicularis GN=RB... [more]
RBM4_HUMAN1.780e-1128.48RNA-binding protein 4 OS=Homo sapiens GN=RBM4 PE=1... [more]
RBM4_BOVIN1.780e-1128.48RNA-binding protein 4 OS=Bos taurus GN=RBM4 PE=2 S... [more]
RSP3_CAEEL2.324e-1145.95Probable splicing factor, arginine/serine-rich 3 O... [more]
RBM4_RABIT2.324e-1128.48RNA-binding protein 4 OS=Oryctolagus cuniculus GN=... [more]
RBM4_MOUSE2.324e-1128.48RNA-binding protein 4 OS=Mus musculus GN=Rbm4 PE=2... [more]
RBM4B_RAT2.324e-1128.48RNA-binding protein 4B OS=Rattus norvegicus GN=Rbm... [more]

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Properties
Property NameValue
Genbank descriptionC31701B08EF StrClemenN Citrus clementina cDNA clone C31701B08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923107 ID=FC923107; Name=FC923107; organism=Citrus clementina; type=EST; length=722bp
GAGATCACATTCACAGCTATCAATCGCCGCTTTCGAAGCTATGATGAGGC
CTATCTTCTGTGGGAACTTTGAGTATGATGCTCGTCAGTCTGATCTGGAG
CGGCTTTTCAGAAGATATGGAAAAGTTGATAGAGTGGATATGAAGTCTGG
ATTTGCATTTATCTATATGGATGATGAGAGAGATGCTGAGGATGCAATTC
GAGGGCTCGATCGAACTGAATTCGGTCGTAAGGGACGCAGACTTCGTGTT
GAATGGACAAAGCATGAACGAGGAATCAGAAGGCCTGGGGGGGGTTCAAG
CGCAAGAAGACCTTCAACAAATACAAGACCTTCAAAGACCTTGTTTGTCA
TTAATTTTGATCCATATCATACGCGCACCAGGGACTTAGAAAGGCACTTT
GAGCCATATGGAAAAATAATAAGTGTTAGGATCAGAAGGAATTTTGCATT
TGTTCAATATGAAGTGCAGGAGGATGCCACCAGAGCATTGGATGCTACAA
ACATGAGCAAGTTGACGGATCGAGTTATTTCAGTGGAATATGCAGTTCGT
GATGACGATGACCGGAGAAATGGACACAGTCCTGATAGAAATCGCGATAG
GTCACCAGATAGGGGTAGGAGGAGATCTCCAAGTCCCTATAGAAGGGAAA
GAGGTAGTCCTGATTATGGCCGTGGCTCTAGCCGAAGTCTTACAGGAGAG
AGAGGGGTAGCCCTGATTATGG
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