FC923107
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC923107 vs. ExPASy Swiss-Prot
Match: RSP41_ARATH (Arginine/serine-rich-splicing factor RSP41 OS=Arabidopsis thaliana GN=RSP41 PE=1 SV=2) HSP 1 Score: 270.396 bits (690), Expect = 6.274e-74 Identity = 131/178 (73.60%), Postives = 150/178 (84.27%), Query Frame = 2 Query: 44 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTKHEXXXXXXXXXXXXXXXXTNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVRDDDDRRNGH 577 M+P+FCGNFEYDAR+SDLERLFR+YGKV+RVDMK+GFAF+YM+DERDAEDAIR LDR E+GR GRRLRVEWTK++ + RPSKTLFVINFD +TRTRDLERHFEPYGKI++VRIRRNFAF+QYE QEDATRALDATN SKL D+VISVEYAV+DDD R NG+ Sbjct: 1 MKPVFCGNFEYDARESDLERLFRKYGKVERVDMKAGFAFVYMEDERDAEDAIRALDRFEYGRTGRRLRVEWTKNDRGGAGRSGGSRRSS--SGLRPSKTLFVINFDAQNTRTRDLERHFEPYGKIVNVRIRRNFAFIQYEAQEDATRALDATNSSKLMDKVISVEYAVKDDDSRGNGY 176 HSP 2 Score: 28.8758 bits (63), Expect = 6.274e-74 Identity = 11/13 (84.62%), Postives = 11/13 (84.62%), Query Frame = 1 Query: 682 PKSYRRERGSPDY 720 P YRRERGSPDY Sbjct: 193 PSPYRRERGSPDY 205
BLAST of FC923107 vs. ExPASy Swiss-Prot
Match: RSP40_ARATH (Arginine/serine-rich-splicing factor RSP40 OS=Arabidopsis thaliana GN=RSP40 PE=1 SV=2) HSP 1 Score: 270.781 bits (691), Expect = 1.067e-73 Identity = 132/178 (74.16%), Postives = 150/178 (84.27%), Query Frame = 2 Query: 44 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTKHEXXXXXXXXXXXXXXXXTNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVRDDDDRRNGH 577 M+P+FCGNFEYDAR+ DLERLFR+YGKV+RVDMK+GFAF+YM+DERDAEDAIR LDR EFGRKGRRLRVEWTK E ++ RPSKTLFVINFD +TRTRDLE+HFEPYGKI++VRIRRNFAF+QYE QEDATRALDA+N SKL D+VISVEYAV+DDD R NGH Sbjct: 1 MKPVFCGNFEYDAREGDLERLFRKYGKVERVDMKAGFAFVYMEDERDAEDAIRALDRFEFGRKGRRLRVEWTKSERGGDKRSGGGSRRSS-SSMRPSKTLFVINFDADNTRTRDLEKHFEPYGKIVNVRIRRNFAFIQYEAQEDATRALDASNNSKLMDKVISVEYAVKDDDARGNGH 177 HSP 2 Score: 27.7202 bits (60), Expect = 1.067e-73 Identity = 10/13 (76.92%), Postives = 11/13 (84.62%), Query Frame = 1 Query: 682 PKSYRRERGSPDY 720 P Y+RERGSPDY Sbjct: 194 PSPYKRERGSPDY 206
BLAST of FC923107 vs. ExPASy Swiss-Prot
Match: RSP31_ARATH (Arginine/serine-rich-splicing factor RSP31 OS=Arabidopsis thaliana GN=RSP31 PE=1 SV=2) HSP 1 Score: 231.106 bits (588), Expect = 4.618e-60 Identity = 113/179 (63.13%), Postives = 138/179 (77.09%), Query Frame = 2 Query: 44 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTKHEXXXXXXXXXXXXXXXXTNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVRDDDDR--RNG 574 MRP+F GNFEY+ RQSDLERLF +YG+VDRVDMKSG+AF+Y +DERDAEDAIR LD FG + RRL VEW K E +N +P+KTLFVINFDP T+ D+E+HFEPYGK+ +VRIRRNF+FVQ+E QEDAT+AL+AT SK+ DRV+SVEYA++DDD+R RNG Sbjct: 1 MRPVFVGNFEYETRQSDLERLFDKYGRVDRVDMKSGYAFVYFEDERDAEDAIRKLDNFPFGYEKRRLSVEWAKGERGRPRGDAKAP-----SNLKPTKTLFVINFDPIRTKEHDIEKHFEPYGKVTNVRIRRNFSFVQFETQEDATKALEATQRSKILDRVVSVEYALKDDDERDDRNG 174
BLAST of FC923107 vs. ExPASy Swiss-Prot
Match: RBM4_MACFA (RNA-binding protein 4 OS=Macaca fascicularis GN=RBM4 PE=2 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 1.780e-11 Identity = 47/165 (28.48%), Postives = 80/165 (48.48%), Query Frame = 2 Query: 44 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTKHEXXXXXXXXXXXXXXXXTNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVE 538 M +F GN +A + ++ LF +YGKV D+ + F++++D+ AEDAIR L + G + VE +K++ ++ S L V N P T ++L FE YG +I I +++AFV E EDA A+ + ++ + + V+ Sbjct: 1 MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLH--HYKLHGVNINVEASKNK------------------SKTSTKLHVGNISPTCT-NKELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQ 144
BLAST of FC923107 vs. ExPASy Swiss-Prot
Match: RBM4_HUMAN (RNA-binding protein 4 OS=Homo sapiens GN=RBM4 PE=1 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 1.780e-11 Identity = 47/165 (28.48%), Postives = 80/165 (48.48%), Query Frame = 2 Query: 44 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTKHEXXXXXXXXXXXXXXXXTNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVE 538 M +F GN +A + ++ LF +YGKV D+ + F++++D+ AEDAIR L + G + VE +K++ ++ S L V N P T ++L FE YG +I I +++AFV E EDA A+ + ++ + + V+ Sbjct: 1 MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLH--HYKLHGVNINVEASKNK------------------SKTSTKLHVGNISPTCT-NKELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQ 144
BLAST of FC923107 vs. ExPASy Swiss-Prot
Match: RBM4_BOVIN (RNA-binding protein 4 OS=Bos taurus GN=RBM4 PE=2 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 1.780e-11 Identity = 47/165 (28.48%), Postives = 80/165 (48.48%), Query Frame = 2 Query: 44 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTKHEXXXXXXXXXXXXXXXXTNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVE 538 M +F GN +A + ++ LF +YGKV D+ + F++++D+ AEDAIR L + G + VE +K++ ++ S L V N P T ++L FE YG +I I +++AFV E EDA A+ + ++ + + V+ Sbjct: 1 MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLH--HYKLHGVNINVEASKNK------------------SKTSTKLHVGNISPTCT-NKELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQ 144
BLAST of FC923107 vs. ExPASy Swiss-Prot
Match: RSP3_CAEEL (Probable splicing factor, arginine/serine-rich 3 OS=Caenorhabditis elegans GN=rsp-3 PE=1 SV=2) HSP 1 Score: 69.3218 bits (168), Expect = 2.324e-11 Identity = 34/74 (45.95%), Postives = 50/74 (67.57%), Query Frame = 2 Query: 53 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSG----FAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTK 262 ++ GN D R+ ++E +F +YG++ VD+KSG FAF+ +D RDAEDA+R D EF GRR+RVE+T+ Sbjct: 11 VYVGNLPGDVREKEVEDIFHKYGRIKYVDIKSGRGPAFAFVEFEDHRDAEDAVRARDGYEF--DGRRIRVEFTR 82
BLAST of FC923107 vs. ExPASy Swiss-Prot
Match: RBM4_RABIT (RNA-binding protein 4 OS=Oryctolagus cuniculus GN=RBM4 PE=2 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 2.324e-11 Identity = 47/165 (28.48%), Postives = 80/165 (48.48%), Query Frame = 2 Query: 44 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTKHEXXXXXXXXXXXXXXXXTNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVE 538 M +F GN +A + ++ LF +YGKV D+ + F++++D+ AEDAIR L + G + VE +K++ ++ S L V N P T ++L FE YG +I I +++AFV E EDA A+ + ++ + + V+ Sbjct: 1 MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLH--HYKLHGVNINVEASKNK------------------SKASTKLHVGNISPTCT-NQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQ 144
BLAST of FC923107 vs. ExPASy Swiss-Prot
Match: RBM4_MOUSE (RNA-binding protein 4 OS=Mus musculus GN=Rbm4 PE=2 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 2.324e-11 Identity = 47/165 (28.48%), Postives = 80/165 (48.48%), Query Frame = 2 Query: 44 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTKHEXXXXXXXXXXXXXXXXTNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVE 538 M +F GN +A + ++ LF +YGKV D+ + F++++D+ AEDAIR L + G + VE +K++ ++ S L V N P T ++L FE YG +I I +++AFV E EDA A+ + ++ + + V+ Sbjct: 1 MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLH--HYKLHGVNINVEASKNK------------------SKASTKLHVGNISPTCT-NQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQ 144
BLAST of FC923107 vs. ExPASy Swiss-Prot
Match: RBM4B_RAT (RNA-binding protein 4B OS=Rattus norvegicus GN=Rbm4b PE=2 SV=2) HSP 1 Score: 69.3218 bits (168), Expect = 2.324e-11 Identity = 47/165 (28.48%), Postives = 80/165 (48.48%), Query Frame = 2 Query: 44 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTKHEXXXXXXXXXXXXXXXXTNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVE 538 M +F GN +A + ++ LF +YGKV D+ + F++++D+ AEDAIR L + G + VE +K++ ++ S L V N P T ++L FE YG +I I +++AFV E EDA A+ + ++ + + V+ Sbjct: 1 MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLH--HYKLHGVNINVEASKNK------------------SKASTKLHVGNISPTCT-NQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQ 144 The following BLAST results are available for this feature:
BLAST of FC923107 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 13
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Sequences
The
following sequences are available for this feature:
EST sequence >FC923107 ID=FC923107; Name=FC923107; organism=Citrus clementina; type=EST; length=722bpback to top |