FC923109

Overview
NameFC923109
Unique NameFC923109
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length678
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923109 vs. ExPASy Swiss-Prot
Match: PSA6_TOBAC (Proteasome subunit alpha type-6 OS=Nicotiana tabacum GN=PAA1 PE=2 SV=1)

HSP 1 Score: 386.726 bits (992), Expect = 5.923e-107
Identity = 190/206 (92.23%), Postives = 198/206 (96.12%), Query Frame = 1
Query:   61 MSRGSGAGYDRHITIFSPEGRLFQVEYAFKAVKATAITSIGVRGKDSVCVVTQKKVPDKLLDQTCVTHLFPITKYLGLLATGNTADARSLVHQARNEAAEYRFKFGYEMPVDVLSRWIADKSQVYTQHAYMRPLGVVAMVLGIDEEKGPQLYKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPTFSYEETVQTAVSALQSVL 678
            MSRGSG GYDRHITIFSPEGRLFQVEYAFKAVKA  ITSIGVRGKDSVCVVTQKKVPDKLLDQT V+HLFPITKYLGLLATG TADAR+LV QARNEAAE+RFK+GYEMPVDVLS+WIADKSQVYTQHAYMRPLGVVAM+LGIDEEKGPQL+KCDPAGHFFGHKATSAG KEQEAINFLEKKMKNDP FSYEETVQTA+SALQSVL
Sbjct:    1 MSRGSGGGYDRHITIFSPEGRLFQVEYAFKAVKAAGITSIGVRGKDSVCVVTQKKVPDKLLDQTSVSHLFPITKYLGLLATGMTADARTLVQQARNEAAEFRFKYGYEMPVDVLSKWIADKSQVYTQHAYMRPLGVVAMILGIDEEKGPQLFKCDPAGHFFGHKATSAGSKEQEAINFLEKKMKNDPAFSYEETVQTAISALQSVL 206          
BLAST of FC923109 vs. ExPASy Swiss-Prot
Match: PSA6_SOYBN (Proteasome subunit alpha type-6 OS=Glycine max GN=PAA1 PE=2 SV=2)

HSP 1 Score: 375.941 bits (964), Expect = 1.045e-103
Identity = 183/206 (88.83%), Postives = 196/206 (95.15%), Query Frame = 1
Query:   61 MSRGSGAGYDRHITIFSPEGRLFQVEYAFKAVKATAITSIGVRGKDSVCVVTQKKVPDKLLDQTCVTHLFPITKYLGLLATGNTADARSLVHQARNEAAEYRFKFGYEMPVDVLSRWIADKSQVYTQHAYMRPLGVVAMVLGIDEEKGPQLYKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPTFSYEETVQTAVSALQSVL 678
            MSRGSG GY+RHITIFSPEGRLFQVEYAFKAVKA  ITSIGVRGKDS+CVVT KKVPDKLLD T VTHLFPITKYLGLLATG TADAR+LV QARNEAAE+RF +GYEMPVDVL++WIADKSQVYTQHAYMRPLGVVAMVLGID+E GPQLYKCDPAGH+FGHKATSAGLK+QEAINFLEKKMKNDP+F+YEETVQTA+SALQSVL
Sbjct:    1 MSRGSGGGYNRHITIFSPEGRLFQVEYAFKAVKAAGITSIGVRGKDSICVVTHKKVPDKLLDNTSVTHLFPITKYLGLLATGMTADARTLVQQARNEAAEFRFTYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLGIDDEYGPQLYKCDPAGHYFGHKATSAGLKDQEAINFLEKKMKNDPSFTYEETVQTAISALQSVL 206          
BLAST of FC923109 vs. ExPASy Swiss-Prot
Match: PSA6B_ARATH (Proteasome subunit alpha type-6-B OS=Arabidopsis thaliana GN=PAA2 PE=1 SV=1)

HSP 1 Score: 373.244 bits (957), Expect = 6.777e-103
Identity = 179/206 (86.89%), Postives = 197/206 (95.63%), Query Frame = 1
Query:   61 MSRGSGAGYDRHITIFSPEGRLFQVEYAFKAVKATAITSIGVRGKDSVCVVTQKKVPDKLLDQTCVTHLFPITKYLGLLATGNTADARSLVHQARNEAAEYRFKFGYEMPVDVLSRWIADKSQVYTQHAYMRPLGVVAMVLGIDEEKGPQLYKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPTFSYEETVQTAVSALQSVL 678
            MSRGSGAGYDRHITIFSPEGRLFQVEYAFKAVKA  ITSIGVRGKDSVCVVTQKKVPDKLLDQ+ V+HLFP+TKYLGLLATG TAD+RSLV QARNEAAE+RF++GYEMP D+L++WIADKSQVYTQHAYMRPLGVVAMVLGIDEE+GP LYKCDPAGHF+GHKATSAG+KEQEA+NFLEKKMK +P F+Y+ETVQTA+SALQSVL
Sbjct:    1 MSRGSGAGYDRHITIFSPEGRLFQVEYAFKAVKAAGITSIGVRGKDSVCVVTQKKVPDKLLDQSSVSHLFPVTKYLGLLATGMTADSRSLVQQARNEAAEFRFQYGYEMPADILAKWIADKSQVYTQHAYMRPLGVVAMVLGIDEERGPLLYKCDPAGHFYGHKATSAGMKEQEAVNFLEKKMKENPAFTYDETVQTAISALQSVL 206          
BLAST of FC923109 vs. ExPASy Swiss-Prot
Match: PSA6_ORYSJ (Proteasome subunit alpha type-6 OS=Oryza sativa subsp. japonica GN=PAA1 PE=2 SV=1)

HSP 1 Score: 372.474 bits (955), Expect = 1.156e-102
Identity = 182/206 (88.35%), Postives = 196/206 (95.15%), Query Frame = 1
Query:   61 MSRGSGAGYDRHITIFSPEGRLFQVEYAFKAVKATAITSIGVRGKDSVCVVTQKKVPDKLLDQTCVTHLFPITKYLGLLATGNTADARSLVHQARNEAAEYRFKFGYEMPVDVLSRWIADKSQVYTQHAYMRPLGVVAMVLGIDEEKGPQLYKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPTFSYEETVQTAVSALQSVL 678
            MSRG+GAGYDRHITIFSPEGRL+QVEYAFKAVK+  +TSIGVRGKDSVCVVTQKKVPDKLLD T VTHLFPITKY+GLLATG TADARSLV+QARNEAAE+RFK+GYEMPVDVL++WIADK+QVYTQHAYMRPLGVVAMVLG DEEK  QL+KCDPAGHFFGHKATSAGLKEQEAINFLEKKMK+DP FSYEETVQ A+SALQSVL
Sbjct:    1 MSRGTGAGYDRHITIFSPEGRLYQVEYAFKAVKSAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYIGLLATGLTADARSLVYQARNEAAEFRFKWGYEMPVDVLAKWIADKAQVYTQHAYMRPLGVVAMVLGYDEEKNAQLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKDDPQFSYEETVQIAISALQSVL 206          
BLAST of FC923109 vs. ExPASy Swiss-Prot
Match: PSA6A_ARATH (Proteasome subunit alpha type-6-A OS=Arabidopsis thaliana GN=PAA1 PE=1 SV=2)

HSP 1 Score: 369.007 bits (946), Expect = 1.278e-101
Identity = 176/206 (85.44%), Postives = 196/206 (95.15%), Query Frame = 1
Query:   61 MSRGSGAGYDRHITIFSPEGRLFQVEYAFKAVKATAITSIGVRGKDSVCVVTQKKVPDKLLDQTCVTHLFPITKYLGLLATGNTADARSLVHQARNEAAEYRFKFGYEMPVDVLSRWIADKSQVYTQHAYMRPLGVVAMVLGIDEEKGPQLYKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPTFSYEETVQTAVSALQSVL 678
            MSRGSGAGYDRHITIFSPEGRLFQVEYAFKAVK   ITSIGVRGKDSVCVVTQKKVPDKLLDQ+ VTHLFPITKY+GL+ATG TADARSLV QARN+AAE+RF +GYEMPVD+L++WIADKSQVYTQHAYMRPLGVVAMV+G+DEE GP LYKCDPAGHF+GHKATSAG+KEQEA+NFLEKKMK +P+F+++ETVQTA+SALQSVL
Sbjct:    1 MSRGSGAGYDRHITIFSPEGRLFQVEYAFKAVKTAGITSIGVRGKDSVCVVTQKKVPDKLLDQSSVTHLFPITKYIGLVATGITADARSLVQQARNQAAEFRFTYGYEMPVDILAKWIADKSQVYTQHAYMRPLGVVAMVMGVDEENGPLLYKCDPAGHFYGHKATSAGMKEQEAVNFLEKKMKENPSFTFDETVQTAISALQSVL 206          
BLAST of FC923109 vs. ExPASy Swiss-Prot
Match: PSA6_RAT (Proteasome subunit alpha type-6 OS=Rattus norvegicus GN=Psma6 PE=1 SV=1)

HSP 1 Score: 268.085 bits (684), Expect = 3.070e-71
Identity = 128/206 (62.14%), Postives = 169/206 (82.04%), Query Frame = 1
Query:   61 MSRGSGAGYDRHITIFSPEGRLFQVEYAFKAVKATAITSIGVRGKDSVCVVTQKKVPDKLLDQTCVTHLFPITKYLGLLATGNTADARSLVHQARNEAAEYRFKFGYEMPVDVLSRWIADKSQVYTQHAYMRPLGVVAMVLGIDEEKGPQLYKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPTFSYEETVQTAVSALQSVL 678
            MSRGS AG+DRHITIFSPEGRL+QVEYAFKA+    +TS+ VRGKD   +VTQKKVPDKLLD + VTHLF IT+ +G + TG TAD+RS V +AR EAA +++K+GYE+PVD+L + IAD SQVYTQ+A MRPLG   +++GIDEE+GPQ+YKCDPAG++ G KAT+AG+K+ E+ +FLEKK+K    +++E+TV+TA++ L +VL
Sbjct:    1 MSRGSSAGFDRHITIFSPEGRLYQVEYAFKAINQGGLTSVAVRGKDCAVIVTQKKVPDKLLDSSTVTHLFKITENIGCVMTGMTADSRSQVQRARYEAANWKYKYGYEIPVDMLCKRIADISQVYTQNAEMRPLGCCMILIGIDEEQGPQVYKCDPAGYYCGFKATAAGVKQTESTSFLEKKVKKKFDWTFEQTVETAITCLSTVL 206          
BLAST of FC923109 vs. ExPASy Swiss-Prot
Match: PSA6_MOUSE (Proteasome subunit alpha type-6 OS=Mus musculus GN=Psma6 PE=1 SV=1)

HSP 1 Score: 268.085 bits (684), Expect = 3.070e-71
Identity = 128/206 (62.14%), Postives = 169/206 (82.04%), Query Frame = 1
Query:   61 MSRGSGAGYDRHITIFSPEGRLFQVEYAFKAVKATAITSIGVRGKDSVCVVTQKKVPDKLLDQTCVTHLFPITKYLGLLATGNTADARSLVHQARNEAAEYRFKFGYEMPVDVLSRWIADKSQVYTQHAYMRPLGVVAMVLGIDEEKGPQLYKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPTFSYEETVQTAVSALQSVL 678
            MSRGS AG+DRHITIFSPEGRL+QVEYAFKA+    +TS+ VRGKD   +VTQKKVPDKLLD + VTHLF IT+ +G + TG TAD+RS V +AR EAA +++K+GYE+PVD+L + IAD SQVYTQ+A MRPLG   +++GIDEE+GPQ+YKCDPAG++ G KAT+AG+K+ E+ +FLEKK+K    +++E+TV+TA++ L +VL
Sbjct:    1 MSRGSSAGFDRHITIFSPEGRLYQVEYAFKAINQGGLTSVAVRGKDCAVIVTQKKVPDKLLDSSTVTHLFKITESIGCVMTGMTADSRSQVQRARYEAANWKYKYGYEIPVDMLCKRIADISQVYTQNAEMRPLGCCMILIGIDEEQGPQVYKCDPAGYYCGFKATAAGVKQTESTSFLEKKVKKKFDWTFEQTVETAITCLSTVL 206          
BLAST of FC923109 vs. ExPASy Swiss-Prot
Match: PSA6_HUMAN (Proteasome subunit alpha type-6 OS=Homo sapiens GN=PSMA6 PE=1 SV=1)

HSP 1 Score: 268.085 bits (684), Expect = 3.070e-71
Identity = 128/206 (62.14%), Postives = 169/206 (82.04%), Query Frame = 1
Query:   61 MSRGSGAGYDRHITIFSPEGRLFQVEYAFKAVKATAITSIGVRGKDSVCVVTQKKVPDKLLDQTCVTHLFPITKYLGLLATGNTADARSLVHQARNEAAEYRFKFGYEMPVDVLSRWIADKSQVYTQHAYMRPLGVVAMVLGIDEEKGPQLYKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPTFSYEETVQTAVSALQSVL 678
            MSRGS AG+DRHITIFSPEGRL+QVEYAFKA+    +TS+ VRGKD   +VTQKKVPDKLLD + VTHLF IT+ +G + TG TAD+RS V +AR EAA +++K+GYE+PVD+L + IAD SQVYTQ+A MRPLG   +++GIDEE+GPQ+YKCDPAG++ G KAT+AG+K+ E+ +FLEKK+K    +++E+TV+TA++ L +VL
Sbjct:    1 MSRGSSAGFDRHITIFSPEGRLYQVEYAFKAINQGGLTSVAVRGKDCAVIVTQKKVPDKLLDSSTVTHLFKITENIGCVMTGMTADSRSQVQRARYEAANWKYKYGYEIPVDMLCKRIADISQVYTQNAEMRPLGCCMILIGIDEEQGPQVYKCDPAGYYCGFKATAAGVKQTESTSFLEKKVKKKFDWTFEQTVETAITCLSTVL 206          
BLAST of FC923109 vs. ExPASy Swiss-Prot
Match: PSA6_BOVIN (Proteasome subunit alpha type-6 OS=Bos taurus GN=PSMA6 PE=1 SV=1)

HSP 1 Score: 268.085 bits (684), Expect = 3.070e-71
Identity = 128/206 (62.14%), Postives = 169/206 (82.04%), Query Frame = 1
Query:   61 MSRGSGAGYDRHITIFSPEGRLFQVEYAFKAVKATAITSIGVRGKDSVCVVTQKKVPDKLLDQTCVTHLFPITKYLGLLATGNTADARSLVHQARNEAAEYRFKFGYEMPVDVLSRWIADKSQVYTQHAYMRPLGVVAMVLGIDEEKGPQLYKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPTFSYEETVQTAVSALQSVL 678
            MSRGS AG+DRHITIFSPEGRL+QVEYAFKA+    +TS+ VRGKD   +VTQKKVPDKLLD + VTHLF IT+ +G + TG TAD+RS V +AR EAA +++K+GYE+PVD+L + IAD SQVYTQ+A MRPLG   +++GIDEE+GPQ+YKCDPAG++ G KAT+AG+K+ E+ +FLEKK+K    +++E+TV+TA++ L +VL
Sbjct:    1 MSRGSSAGFDRHITIFSPEGRLYQVEYAFKAINQGGLTSVAVRGKDCAVIVTQKKVPDKLLDSSTVTHLFKITENIGCVMTGMTADSRSQVQRARYEAANWKYKYGYEIPVDMLCKRIADISQVYTQNAEMRPLGCCMILIGIDEEQGPQVYKCDPAGYYCGFKATAAGVKQTESTSFLEKKVKKKFDWTFEQTVETAITCLSTVL 206          
BLAST of FC923109 vs. ExPASy Swiss-Prot
Match: PSA6_DICDI (Proteasome subunit alpha type-6 OS=Dictyostelium discoideum GN=psmA6 PE=3 SV=1)

HSP 1 Score: 228.024 bits (580), Expect = 3.521e-59
Identity = 115/211 (54.50%), Postives = 154/211 (72.99%), Query Frame = 1
Query:   61 MSRGSGAGYDRHITIFSPEGRLFQVEYAFKAVKATAITSIGVRGKDSVCVVTQKKVPDKLLDQTCVTHLFPITKYLGLLATGNTADARSLVHQARNEAAEYRFKFGYEMPVDVLSRWIADKSQVYTQHAYMRPLGVVAMVLGIDEEKGPQLYKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPTFSYEETVQT-----AVSALQSVL 678
            MSR   AGYD  I IFSP+G+L+Q+EYAFKA+K   +TS+G+RGKD V V TQKK+PDKL+D   VT L+ +T Y+G + TG   D++S   +A  E A +  KFGY++P +VL++ +AD +Q+ TQHA  RPLGV  +++GID+E GPQL+K DPAG F G+KAT+AG KEQE+ NFLEKK K++P  S +ET+Q      A+S LQSVL
Sbjct:    1 MSRSGTAGYDMSI-IFSPQGKLYQIEYAFKAIKTGGLTSVGIRGKDCVVVATQKKIPDKLIDPKSVTSLYKLTDYIGCVQTGIVPDSKSQASRAIQECATFHHKFGYQIPPNVLAKRMADIAQLSTQHASARPLGVAMILIGIDDELGPQLFKVDPAGVFTGYKATAAGEKEQESTNFLEKKFKSNPQLSKDETIQVSLIVMAISTLQSVL 210          
The following BLAST results are available for this feature:
BLAST of FC923109 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 174
Match NameE-valueIdentityDescription
PSA6_TOBAC5.923e-10792.23Proteasome subunit alpha type-6 OS=Nicotiana tabac... [more]
PSA6_SOYBN1.045e-10388.83Proteasome subunit alpha type-6 OS=Glycine max GN=... [more]
PSA6B_ARATH6.777e-10386.89Proteasome subunit alpha type-6-B OS=Arabidopsis t... [more]
PSA6_ORYSJ1.156e-10288.35Proteasome subunit alpha type-6 OS=Oryza sativa su... [more]
PSA6A_ARATH1.278e-10185.44Proteasome subunit alpha type-6-A OS=Arabidopsis t... [more]
PSA6_RAT3.070e-7162.14Proteasome subunit alpha type-6 OS=Rattus norvegic... [more]
PSA6_MOUSE3.070e-7162.14Proteasome subunit alpha type-6 OS=Mus musculus GN... [more]
PSA6_HUMAN3.070e-7162.14Proteasome subunit alpha type-6 OS=Homo sapiens GN... [more]
PSA6_BOVIN3.070e-7162.14Proteasome subunit alpha type-6 OS=Bos taurus GN=P... [more]
PSA6_DICDI3.521e-5954.50Proteasome subunit alpha type-6 OS=Dictyostelium d... [more]

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Properties
Property NameValue
Genbank descriptionC31701B10EF StrClemenN Citrus clementina cDNA clone C31701B10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923109 ID=FC923109; Name=FC923109; organism=Citrus clementina; type=EST; length=678bp
GACTGAAGAAAAGTAAAAACACAAATCTGCAAATAGAAGAAAGAGAAAAA
AAAATCGAGAATGAGTAGAGGAAGCGGAGCCGGCTACGATCGCCACATCA
CCATCTTCTCTCCCGAGGGTCGTCTCTTCCAAGTTGAGTATGCGTTTAAG
GCTGTAAAGGCCACTGCCATCACTTCCATTGGTGTTCGCGGCAAGGACTC
TGTCTGTGTTGTCACTCAGAAGAAGGTCCCTGACAAGCTTTTGGATCAGA
CTTGTGTCACCCATCTTTTCCCTATTACCAAGTACCTTGGATTGTTGGCC
ACCGGCAACACAGCTGATGCTAGGTCCTTGGTTCACCAAGCAAGGAATGA
AGCTGCTGAATATCGGTTCAAATTTGGATATGAAATGCCAGTAGATGTTT
TGTCCAGATGGATTGCAGACAAGTCACAGGTTTATACCCAGCATGCTTAT
ATGAGACCTCTTGGAGTTGTTGCTATGGTTTTGGGTATCGATGAAGAGAA
AGGGCCTCAACTTTACAAATGTGATCCTGCTGGACATTTTTTTGGTCACA
AGGCAACGAGTGCTGGACTGAAAGAGCAAGAGGCAATCAATTTCTTGGAA
AAGAAAATGAAAAATGATCCTACCTTTTCTTATGAGGAAACAGTTCAGAC
TGCTGTCTCTGCTCTGCAATCTGTTCTC
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