FC923113

Overview
NameFC923113
Unique NameFC923113
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length699
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC923113_ssr59 microsatellite FC923113_ssr59:59..73. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC923113 vs. ExPASy Swiss-Prot
Match: NDK3_ARATH (Nucleoside diphosphate kinase III, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=NDPK3 PE=1 SV=1)

HSP 1 Score: 297.36 bits (760), Expect = 1.604e-80
Identity = 145/178 (81.46%), Postives = 164/178 (92.13%), Query Frame = 1 
Query:  145 KNSRFYSEGRAVSAAAAVTFSGKLPYLVSSFGRA-GSSTASRSWLSGAIAIPAAAYMLQEQEVHAAEMERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGR 675
            KN+RF+SEGRA+ AAAAV+ SGK+P   S+F R+ GS  AS+SW++G +A+PAAAYM+Q+QEV AAEMERTFIAIKPDGVQRGLISEIISRFERKGFKLV IK++VPSK+FAQKHYHDLKERPFFNGLC+FLSSGPVIAMVWEG+GVI YGRKLIGATDPQKSEPGTIRGDLAV VGR
Sbjct:   21 KNARFFSEGRAIGAAAAVSASGKIPLYASNFARSSGSGVASKSWITGLLALPAAAYMIQDQEVLAAEMERTFIAIKPDGVQRGLISEIISRFERKGFKLVGIKVIVPSKDFAQKHYHDLKERPFFNGLCDFLSSGPVIAMVWEGDGVIRYGRKLIGATDPQKSEPGTIRGDLAVTVGR 198

HSP 2 Score: 22.3274 bits (46), Expect = 1.604e-80
Identity = 8/9 (88.89%), Postives = 9/9 (100.00%), Query Frame = 3 
Query:  672 KNIIHGSDG 698
            +NIIHGSDG
Sbjct:  198 RNIIHGSDG 206
[Close]
BLAST of FC923113 vs. ExPASy Swiss-Prot
Match: NDK4_ARATH (Nucleoside diphosphate kinase IV, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=NDK4 PE=1 SV=2)

HSP 1 Score: 289.271 bits (739), Expect = 4.250e-78
Identity = 139/177 (78.53%), Postives = 159/177 (89.83%), Query Frame = 1 
Query:  145 KNSRFYSEGRAVSAAAAVTFSGKLPYLVSSFGRAGSSTASRSWLSGAIAIPAAAYMLQEQEVHAAEMERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGR 675
            KN+RF+SEGRA+ AA+ V  +GK+P   S+FG++GS   S SW++G +A+PAAA+MLQ+QE  AAEMERTFIAIKPDGVQRGLISEII+RFERKG+KLV IK++VPSK FAQKHYHDLKERPFFNGLC FLSSGPV+AMVWEGEGVI YGRKLIGATDPQKSEPGTIRGDLAVVVGR
Sbjct:   21 KNARFFSEGRAIGAASVVHATGKVPQYASNFGKSGSGFVSNSWITGLLALPAAAFMLQDQEALAAEMERTFIAIKPDGVQRGLISEIITRFERKGYKLVGIKVMVPSKGFAQKHYHDLKERPFFNGLCNFLSSGPVVAMVWEGEGVIRYGRKLIGATDPQKSEPGTIRGDLAVVVGR 197

HSP 2 Score: 22.3274 bits (46), Expect = 4.250e-78
Identity = 8/9 (88.89%), Postives = 9/9 (100.00%), Query Frame = 3 
Query:  672 KNIIHGSDG 698
            +NIIHGSDG
Sbjct:  197 RNIIHGSDG 205
[Close]
BLAST of FC923113 vs. ExPASy Swiss-Prot
Match: NDK4_SPIOL (Nucleoside diphosphate kinase 4, chloroplastic OS=Spinacia oleracea GN=NDK4 PE=1 SV=1)

HSP 1 Score: 274.633 bits (701), Expect = 1.028e-73
Identity = 137/176 (77.84%), Postives = 153/176 (86.93%), Query Frame = 1 
Query:  148 NSRFYSEGRAVSAAAAVTFSGKLPYLVSSFGRAGSSTASRSWLSGAIAIPAAAYMLQEQEVHAAEMERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGR 675
            +SRF  EGR V+A AAV+   K PYL S     G + AS +W+S A+AIPAAAY+LQ+QE  AAE ERTFIAIKPDGVQRGLISEI++RFERKGFKLVAIK+V+PSK+FAQKHYHDL ERPFFNGLC+FLSSGPV+AMVWEGEGVI YGRKLIGATDPQKSEPGTIRGDLAVVVGR
Sbjct:   24 SSRFLPEGRTVAATAAVSLRVKAPYLASF----GGANASGTWMSTALAIPAAAYLLQDQEACAAEFERTFIAIKPDGVQRGLISEIVARFERKGFKLVAIKVVIPSKDFAQKHYHDLSERPFFNGLCDFLSSGPVVAMVWEGEGVIKYGRKLIGATDPQKSEPGTIRGDLAVVVGR 195

HSP 2 Score: 22.3274 bits (46), Expect = 1.028e-73
Identity = 8/9 (88.89%), Postives = 9/9 (100.00%), Query Frame = 3 
Query:  672 KNIIHGSDG 698
            +NIIHGSDG
Sbjct:  195 RNIIHGSDG 203
[Close]
BLAST of FC923113 vs. ExPASy Swiss-Prot
Match: NDK3_SPIOL (Nucleoside diphosphate kinase 3 OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 3.628e-49
Identity = 93/113 (82.30%), Postives = 103/113 (91.15%), Query Frame = 1 
Query:  337 AEMERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGR 675
            AE ERTFIAIKPDGVQRGLISEI++RFERKGF LVAIK+V+PS+ FAQKHY DLK++PF+ GL  + SSGPV+AMVWEGEGVI YGRKLIGATDPQKSEPGTIRGDLAVV GR
Sbjct:    1 AEFERTFIAIKPDGVQRGLISEIVARFERKGFSLVAIKVVIPSRPFAQKHYADLKDKPFYVGLVAYWSSGPVVAMVWEGEGVIKYGRKLIGATDPQKSEPGTIRGDLAVVNGR 113

HSP 2 Score: 22.3274 bits (46), Expect = 3.628e-49
Identity = 8/9 (88.89%), Postives = 9/9 (100.00%), Query Frame = 3 
Query:  672 KNIIHGSDG 698
            +NIIHGSDG
Sbjct:  113 RNIIHGSDG 121
[Close]
BLAST of FC923113 vs. ExPASy Swiss-Prot
Match: NDK_PROMT (Nucleoside diphosphate kinase OS=Prochlorococcus marinus (strain NATL2A) GN=ndk PE=3 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 1.848e-41
Identity = 80/111 (72.07%), Postives = 95/111 (85.59%), Query Frame = 1 
Query:  343 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGR 675
            +ERTF+AIKPDGVQRGLI+EI+ RFE KGFKLV +K + PSKE A+KHY   K+RPFF+GL +F++SGPVIAMVWEGEGVI   RKLIGAT P ++EPGTIRGDLAV +GR
Sbjct:    3 LERTFVAIKPDGVQRGLIAEILGRFETKGFKLVGLKQLTPSKELAEKHYGVHKDRPFFSGLVDFITSGPVIAMVWEGEGVIASARKLIGATKPLEAEPGTIRGDLAVNIGR 113

HSP 2 Score: 21.9422 bits (45), Expect = 1.848e-41
Identity = 7/9 (77.78%), Postives = 9/9 (100.00%), Query Frame = 3 
Query:  672 KNIIHGSDG 698
            +N+IHGSDG
Sbjct:  113 RNVIHGSDG 121
[Close]
BLAST of FC923113 vs. ExPASy Swiss-Prot
Match: NDK_PROM1 (Nucleoside diphosphate kinase OS=Prochlorococcus marinus (strain NATL1A) GN=ndk PE=3 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 2.408e-41
Identity = 79/111 (71.17%), Postives = 95/111 (85.59%), Query Frame = 1 
Query:  343 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGR 675
            +ERTF+AIKPDGVQRGLI+EI+ RFE KGFKLV +K + PSKE A+KHY   K+RPFF+GL +F++SGPV+AMVWEGEGVI   RKLIGAT P ++EPGTIRGDLAV +GR
Sbjct:    3 LERTFVAIKPDGVQRGLIAEILGRFETKGFKLVGLKQLTPSKELAEKHYGVHKDRPFFSGLVDFITSGPVVAMVWEGEGVIASARKLIGATKPLEAEPGTIRGDLAVNIGR 113

HSP 2 Score: 21.9422 bits (45), Expect = 2.408e-41
Identity = 7/9 (77.78%), Postives = 9/9 (100.00%), Query Frame = 3 
Query:  672 KNIIHGSDG 698
            +N+IHGSDG
Sbjct:  113 RNVIHGSDG 121
[Close]
BLAST of FC923113 vs. ExPASy Swiss-Prot
Match: NDK_PROMA (Nucleoside diphosphate kinase OS=Prochlorococcus marinus GN=ndk PE=3 SV=2)

HSP 1 Score: 164.466 bits (415), Expect = 1.179e-40
Identity = 77/111 (69.37%), Postives = 93/111 (83.78%), Query Frame = 1 
Query:  343 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGR 675
            +ERTF+AIKPDGVQRGL+ EI+ RFERKGFKLV +K ++PSKE A+KHY   KERPFF GL  F++SGPV+AMVWEG+GVI   RKLIGAT P ++EPGTIRGDL + +GR
Sbjct:    3 VERTFLAIKPDGVQRGLVGEILGRFERKGFKLVGLKQLIPSKELAEKHYGVHKERPFFTGLVGFITSGPVVAMVWEGDGVILSARKLIGATKPLEAEPGTIRGDLGINIGR 113

HSP 2 Score: 21.9422 bits (45), Expect = 1.179e-40
Identity = 7/9 (77.78%), Postives = 9/9 (100.00%), Query Frame = 3 
Query:  672 KNIIHGSDG 698
            +N+IHGSDG
Sbjct:  113 RNVIHGSDG 121
[Close]
BLAST of FC923113 vs. ExPASy Swiss-Prot
Match: NDK_PROMS (Nucleoside diphosphate kinase OS=Prochlorococcus marinus (strain AS9601) GN=ndk PE=3 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 1.179e-40
Identity = 78/110 (70.91%), Postives = 92/110 (83.64%), Query Frame = 1 
Query:  346 ERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGR 675
            ERTFIAIKPDGVQRG +SEI+ RFE+KGFKLV +K ++PSKE AQ HY   +ERPFF  L +F+SSGPV+AMVWEGEGVI   RKLIGAT P ++EPGTIRGDLA+ +GR
Sbjct:    4 ERTFIAIKPDGVQRGYVSEILGRFEKKGFKLVGLKQLIPSKELAQNHYGVHRERPFFGDLVDFISSGPVVAMVWEGEGVILSARKLIGATKPLEAEPGTIRGDLAIDIGR 113

HSP 2 Score: 22.3274 bits (46), Expect = 1.179e-40
Identity = 8/9 (88.89%), Postives = 9/9 (100.00%), Query Frame = 3 
Query:  672 KNIIHGSDG 698
            +NIIHGSDG
Sbjct:  113 RNIIHGSDG 121
[Close]
BLAST of FC923113 vs. ExPASy Swiss-Prot
Match: NDK_PROM9 (Nucleoside diphosphate kinase OS=Prochlorococcus marinus (strain MIT 9312) GN=ndk PE=3 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 1.536e-40
Identity = 78/110 (70.91%), Postives = 92/110 (83.64%), Query Frame = 1 
Query:  346 ERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGR 675
            ERTFIAIKPDGVQRG +SEII RFE+KGFKLV +K ++PSK+ AQ HY   +ERPFF  L +F+SSGPV+AMVWEGEGVI   RKLIGAT P ++EPGTIRGDLA+ +GR
Sbjct:    4 ERTFIAIKPDGVQRGYVSEIIGRFEKKGFKLVGLKQLIPSKDLAQNHYGVHRERPFFGDLVDFISSGPVVAMVWEGEGVILSARKLIGATKPLEAEPGTIRGDLAIDIGR 113

HSP 2 Score: 22.3274 bits (46), Expect = 1.536e-40
Identity = 8/9 (88.89%), Postives = 9/9 (100.00%), Query Frame = 3 
Query:  672 KNIIHGSDG 698
            +NIIHGSDG
Sbjct:  113 RNIIHGSDG 121
[Close]
BLAST of FC923113 vs. ExPASy Swiss-Prot
Match: NDK_PROM0 (Nucleoside diphosphate kinase OS=Prochlorococcus marinus (strain MIT 9301) GN=ndk PE=3 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 1.536e-40
Identity = 78/110 (70.91%), Postives = 92/110 (83.64%), Query Frame = 1 
Query:  346 ERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGR 675
            ERTFIAIKPDGVQRG +SEII RFE+KGFKLV +K ++PSKE AQ HY   +ERPFF  L +F+SSGPV+AMVWEGEGVI   RKLIG+T P ++EPGTIRGDLA+ +GR
Sbjct:    4 ERTFIAIKPDGVQRGYVSEIIGRFEKKGFKLVGLKQLIPSKELAQNHYGVHRERPFFGDLVDFISSGPVVAMVWEGEGVILSARKLIGSTKPLEAEPGTIRGDLAIDIGR 113

HSP 2 Score: 22.3274 bits (46), Expect = 1.536e-40
Identity = 8/9 (88.89%), Postives = 9/9 (100.00%), Query Frame = 3 
Query:  672 KNIIHGSDG 698
            +NIIHGSDG
Sbjct:  113 RNIIHGSDG 121
The following BLAST results are available for this feature:
BLAST of FC923113 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NDK3_ARATH1.604e-8081.46Nucleoside diphosphate kinase III, chloroplastic/m... [more]
NDK4_ARATH4.250e-7878.53Nucleoside diphosphate kinase IV, chloroplastic/mi... [more]
NDK4_SPIOL1.028e-7377.84Nucleoside diphosphate kinase 4, chloroplastic OS=... [more]
NDK3_SPIOL3.628e-4982.30Nucleoside diphosphate kinase 3 OS=Spinacia olerac... [more]
NDK_PROMT1.848e-4172.07Nucleoside diphosphate kinase OS=Prochlorococcus m... [more]
NDK_PROM12.408e-4171.17Nucleoside diphosphate kinase OS=Prochlorococcus m... [more]
NDK_PROMA1.179e-4069.37Nucleoside diphosphate kinase OS=Prochlorococcus m... [more]
NDK_PROMS1.179e-4070.91Nucleoside diphosphate kinase OS=Prochlorococcus m... [more]
NDK_PROM91.536e-4070.91Nucleoside diphosphate kinase OS=Prochlorococcus m... [more]
NDK_PROM01.536e-4070.91Nucleoside diphosphate kinase OS=Prochlorococcus m... [more]

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Properties
Property NameValue
Genbank descriptionC31701C02EF StrClemenN Citrus clementina cDNA clone C31701C02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923113 ID=FC923113; Name=FC923113; organism=Citrus clementina; type=EST; length=699bp
GGTTGCTCTCTGTTGGGCTTACTTACTCTCTTGTTTCAGCTTAAATTTGA
GTCTTGAGAATCCAATCCAATCCCAAGTATGAGCTCTCAGATAGTTAGAT
CTGCTTCTAGAGCCGCAACCGCAAGGTCTCTGCTTTCAGCTTCCAAGAAT
TCGCGCTTTTACTCCGAAGGGCGAGCTGTATCTGCTGCAGCGGCAGTTAC
ATTCAGTGGGAAGTTGCCTTATCTTGTTTCAAGTTTTGGGAGGGCTGGTT
CCTCAACTGCATCTCGATCATGGCTCTCGGGAGCCATTGCAATTCCTGCT
GCAGCTTACATGCTCCAGGAGCAGGAAGTACATGCTGCAGAGATGGAACG
CACTTTCATTGCCATCAAGCCAGATGGGGTGCAAAGAGGACTGATTTCAG
AAATCATCTCTCGCTTTGAGCGCAAAGGCTTTAAGCTTGTGGCCATTAAG
ATAGTAGTTCCATCAAAAGAGTTTGCACAAAAACATTATCATGATCTGAA
GGAAAGACCCTTCTTTAATGGCCTGTGCGAGTTCCTTAGCTCTGGTCCAG
TCATTGCCATGGTATGGGAAGGAGAGGGAGTTATTACGTATGGTCGCAAA
CTCATTGGAGCCACAGATCCTCAGAAATCAGAACCTGGAACAATCAGAGG
CGATCTAGCTGTTGTTGTTGGAAGAACATCATTCATGGAAGTGATGGCC
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