FC928847

Overview
NameFC928847
Unique NameFC928847
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length956
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC928847_ssr138 microsatellite FC928847_ssr138:138..149. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig9264 contig Ccv1_Contig9264:11..966. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC928847 vs. ExPASy Swiss-Prot
Match: FTRV_MAIZE (Ferredoxin-thioredoxin reductase, variable chain OS=Zea mays PE=1 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 2.529e-20
Identity = 45/75 (60.00%), Postives = 60/75 (80.00%), Query Frame = 1 
Query:  490 KIGARVKVKVPLKVYHVPRVPELDLSGMEGVLKQYVGVWKGKKISANLPYKVAFVTEIEG--RTVKFFAHLKDDE 708
            KIG RV+V  PL+VYHV + P+LD+ GMEGV+KQYV VWKGK+++AN P+KV F   +EG  + V+FFAHL++DE
Sbjct:   17 KIGRRVRVTAPLRVYHVLKAPDLDIQGMEGVVKQYVCVWKGKRVTANFPFKVEFELAVEGQPKPVRFFAHLREDE 91
[Close]
BLAST of FC928847 vs. ExPASy Swiss-Prot
Match: FTRV_SPIOL (Ferredoxin-thioredoxin reductase, variable chain, chloroplastic OS=Spinacia oleracea GN=FTRV PE=1 SV=2)

HSP 1 Score: 93.2041 bits (230), Expect = 2.367e-18
Identity = 51/111 (45.95%), Postives = 70/111 (63.06%), Query Frame = 1 
Query:  382 ISCEVAVKSNNSTASVGLEXXXXXXXXXXDDGFDESKIGARVKVKVPLKVYHVPRVPELDLS-GMEGVLKQYVGVWKGKKISANLPYKVAFVTEIEGR-TVKFFAHLKDDE 708
            I CEVA+KS++ST                    +  K+G +VKVK PLKVYHVP++PE++L+  M GV+KQYVG WKGK IS N P+KV +  ++  R +VK   HLK++E
Sbjct:   60 ICCEVALKSDSSTGFDSSSSSPPEEDEELKKNLE--KVGCKVKVKSPLKVYHVPKLPEVELTPDMVGVIKQYVGFWKGKYISPNYPFKVEYRIDVPDRGSVKLVVHLKEEE 168
The following BLAST results are available for this feature:
BLAST of FC928847 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
FTRV_MAIZE2.529e-2060.00Ferredoxin-thioredoxin reductase, variable chain O... [more]
FTRV_SPIOL2.367e-1845.95Ferredoxin-thioredoxin reductase, variable chain, ... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAH1CA01RM2 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH1CA01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC928847 ID=FC928847; Name=FC928847; organism=Citrus clementina; type=EST; length=956bp
GGCACGAGGAGGAGAGGATGTATACGATCTAGAGTGTTATTCATTCGACA
CGTGTGCAATAGAGACGAAAGTCCGTTGCCATCGTCTTAGCTCGCCTTAG
CCACTGAGGCCTGAGATAGTGGTTCAATAGAAAAATCAATAATAATAATA
AAAAAAAGAGTAAAGGTTGGGTAATATCATTATTATTATATGATTATTTT
GTGAGAATTAGCAGACGAGTGAAAAGATAGATACACAGAAATCATGACTA
GTACAAGTTTTGCTTTGTCCTCGGCTACTTCTTCGTTGATAAATCGACGG
CCACTTGCGAATGCGTTTGTCTCAGTTTCTTCATTTTCAGCTGCCAATTG
TAATTACAATGTTAATGTTAACAAAAGAAGAATCTCCTGTGAAGTAGCTG
TAAAATCCAACAATTCAACGGCATCCGTAGGACTAGAGAGCAGTCCATCT
TCATCAGCATCAGCGTCGGATGATGGCTTTGATGAGTCTAAGATTGGTGC
GAGGGTTAAGGTGAAGGTGCCGTTGAAGGTTTACCATGTTCCTAGGGTTC
CGGAGCTTGATCTGTCTGGCATGGAAGGTGTGCTCAAGCAATACGTCGGC
GTTTGGAAAGGAAAGAAAATCTCAGCCAATCTGCCTTATAAGGTAGCGTT
TGTTACTGAAATTGAAGGCCGTACTGTCAAGTTCTTTGCACATCTCAAGG
ATGATGAGTTTGATTACCTTGATTAATATTTTTAAATTTTTATTATTTTG
AACATGTTATTCCTTCTCTTTCCTATCTCTATCCTCTACAAATAATATTT
TTAGTCTTTGTATGTAACTCTTCACATGAGATTATGCTTTCTAGTGTTTT
TTATGTTATACTTTCTCTTGCTATATAATCAATCATTTCTATATTTCTTT
CCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAA
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