FC929840

Overview
NameFC929840
Unique NameFC929840
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length703
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14215 contig Ccv1_Contig14215:91..793. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929840 vs. ExPASy Swiss-Prot
Match: GOX_SPIOL (Peroxisomal (S)-2-hydroxy-acid oxidase OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 231.491 bits (589), Expect = 3.410e-60
Identity = 114/185 (61.62%), Postives = 148/185 (80.00%), Query Frame = 1
Query:   85 EPVNLNEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSFTSSSTIEEVAASSNAVRFYQLYVFKKRDITATLVQRAERNGFKALVLTVDTPRLGRREADIKNKMITPP---LKNLEGL 630
            E  N+NE++ +A+  LPKM YD+YA GAED+ TL EN  AF RI FRPRIL+DV+ ID++TTIL +KIS PI+IAPTA+ K+A+PEGE ATARAA++  TIM LS  ++S++EEVA++   +RF+QLYV+K R++ A LV+RAER GFKA+ LTVDTPRLGRREADIKN+ + PP   LKN EG+
Sbjct:    2 EITNVNEYEAIAKQKLPKMVYDYYASGAEDQWTLAENRNAFSRILFRPRILIDVTNIDMTTTILGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWATSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPFLTLKNFEGI 186          
BLAST of FC929840 vs. ExPASy Swiss-Prot
Match: GOX2_ARATH (Probable peroxisomal (S)-2-hydroxy-acid oxidase 2 OS=Arabidopsis thaliana GN=At3g14420 PE=1 SV=1)

HSP 1 Score: 225.328 bits (573), Expect = 2.444e-58
Identity = 110/185 (59.46%), Postives = 146/185 (78.92%), Query Frame = 1
Query:   85 EPVNLNEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSFTSSSTIEEVAASSNAVRFYQLYVFKKRDITATLVQRAERNGFKALVLTVDTPRLGRREADIKNKMITPP---LKNLEGL 630
            E  N+ E+  +A+  LPKM YD+YA GAED+ TL+EN  AF RI FRPRIL+DVS+ID++TT+L +KIS PI++APTA+ K+A+P+GE ATARAA++  TIM LS  ++S++EEVA++   +RF+QLYV+K R++   LV+RAER GFKA+ LTVDTPRLGRRE+DIKN+   PP   LKN EGL
Sbjct:    2 EITNVTEYDAIAKQKLPKMVYDYYASGAEDQWTLQENRNAFARILFRPRILIDVSKIDMTTTVLGFKISMPIMVAPTAMQKMAHPDGEYATARAASAAGTIMTLSSWATSSVEEVASTGPGIRFFQLYVYKNRNVVEQLVRRAERAGFKAIALTVDTPRLGRRESDIKNRFTLPPNLTLKNFEGL 186          
BLAST of FC929840 vs. ExPASy Swiss-Prot
Match: GOX1_ARATH (Probable peroxisomal (S)-2-hydroxy-acid oxidase 1 OS=Arabidopsis thaliana GN=At3g14415 PE=1 SV=1)

HSP 1 Score: 221.861 bits (564), Expect = 2.702e-57
Identity = 108/185 (58.38%), Postives = 144/185 (77.84%), Query Frame = 1
Query:   85 EPVNLNEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSFTSSSTIEEVAASSNAVRFYQLYVFKKRDITATLVQRAERNGFKALVLTVDTPRLGRREADIKNKMITPP---LKNLEGL 630
            E  N+ E+  +A+  LPKM YD+YA GAED+ TL+EN  AF RI FRPRIL+DV++ID++TT+L +KIS PI++APTA  K+A+P+GE ATARAA++  TIM LS  ++S++EEVA++   +RF+QLYV+K R +   LV+RAE+ GFKA+ LTVDTPRLGRRE+DIKN+   PP   LKN EGL
Sbjct:    2 EITNVTEYDAIAKAKLPKMVYDYYASGAEDQWTLQENRNAFARILFRPRILIDVNKIDMATTVLGFKISMPIMVAPTAFQKMAHPDGEYATARAASAAGTIMTLSSWATSSVEEVASTGPGIRFFQLYVYKNRKVVEQLVRRAEKAGFKAIALTVDTPRLGRRESDIKNRFTLPPNLTLKNFEGL 186          
BLAST of FC929840 vs. ExPASy Swiss-Prot
Match: HAOX1_HUMAN (Hydroxyacid oxidase 1 OS=Homo sapiens GN=HAO1 PE=1 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 1.140e-39
Identity = 82/196 (41.84%), Postives = 130/196 (66.33%), Query Frame = 1
Query:   97 LNEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSFTSSSTIEEVA-ASSNAVRFYQLYVFKKRDITATLVQRAERNGFKALVLTVDTPRLGRREADIKNKMITPPLKNLEGLLSTEVSSDTGSNFEADA 681
            +N++++ A+  LPK  YD+Y  GA DE TL +N+ AF R    PR+L +V+  DLST++L  ++S PI +  TA+ ++A+ +GE+AT RA  S  T M+LS  ++S+IEEVA A   A+R+ QLY++K R++T  LV++AE+ G+KA+ +TVDTP LG R  D++N+   PP   ++   ++ +S     NF  D+
Sbjct:    8 INDYEQHAKSVLPKSIYDYYRSGANDEETLADNIAAFSRWKLYPRMLRNVAETDLSTSVLGQRVSMPICVGATAMQRMAHVDGELATVRACQSLGTGMMLSSWATSSIEEVAEAGPEALRWLQLYIYKDREVTKKLVRQAEKMGYKAIFVTVDTPYLGNRLDDVRNRFKLPPQLRMKNFETSTLSFSPEENFGDDS 203          
BLAST of FC929840 vs. ExPASy Swiss-Prot
Match: HAOX_DICDI (Hydroxyacid oxidase OS=Dictyostelium discoideum GN=haox PE=3 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 4.791e-38
Identity = 88/199 (44.22%), Postives = 127/199 (63.82%), Query Frame = 1
Query:   91 VNLNEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSFTSSSTIEEVAASSNA-VRFYQLYVFKKRDITATLVQRAERNGFKALVLTVDTPRLGRREADIKNKMITP-----------PLKNLEGLLSTEVSS 651
            V+++E  E A+  LPKM YD+YA G+ D+ TL EN  AF RI   PR LVDVS+++  T I    IS PI+IAP A+ ++A+  GE+ T  A+   NTIM LS  S++++E++++++N    ++QLYVFK R ++  LV+RAE  G+ ALVLTVDTP LG+R AD KN    P            L NL+G L+  +++
Sbjct:   32 VSVSELHEEAKRLLPKMAYDYYASGSNDQITLAENENAFSRIKLVPRSLVDVSKVNTKTRIFGRDISTPILIAPWAMQRMASQRGELDTVEASKEFNTIMTLSSLSTTSVEDLSSATNGNPGWFQLYVFKDRKVSEELVKRAESIGYSALVLTVDTPFLGKRTADFKNSFKLPNGLSLKIFEKLMLSNLDGGLNQYIAT 230          
BLAST of FC929840 vs. ExPASy Swiss-Prot
Match: HAOX1_MOUSE (Hydroxyacid oxidase 1 OS=Mus musculus GN=Hao1 PE=2 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 3.106e-37
Identity = 78/194 (40.21%), Postives = 128/194 (65.98%), Query Frame = 1
Query:   91 VNLNEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSFTSSSTIEEVA-ASSNAVRFYQLYVFKKRDITATLVQRAERNGFKALVLTVDTPRLGRREADIKNKMITPPLKNLEGLLSTEVSSDTGSNF 669
            V ++++++  R  L K  YD+Y  GA D+ TL +N++AF R    PR+L +V+ IDLST++L  ++S PI +  TA+  +A+ +GE+AT RA  +  T M+LS  ++S+IEEVA A   A+R+ QLY++K R+I+  +V+RAE+ G+KA+ +TVDTP LG R  D++N+   PP   ++   + +++     NF
Sbjct:    6 VCISDYEQHVRSVLQKSVYDYYRSGANDQETLADNIQAFSRWKLYPRMLRNVADIDLSTSVLGQRVSMPICVGATAMQCMAHVDGELATVRACQTMGTGMMLSSWATSSIEEVAEAGPEALRWMQLYIYKDREISRQIVKRAEKQGYKAIFVTVDTPYLGNRIDDVRNRFKLPPQLRMKNFETNDLAFSPKGNF 199          
BLAST of FC929840 vs. ExPASy Swiss-Prot
Match: HAOX2_BOVIN (Hydroxyacid oxidase 2 OS=Bos taurus GN=HAO2 PE=2 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 7.650e-36
Identity = 81/170 (47.65%), Postives = 114/170 (67.06%), Query Frame = 1
Query:   91 VNLNEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSFTSSSTIEE-VAASSNAVRFYQLYVFKKRDITATLVQRAERNGFKALVLTVDTPRLGRREADIKNKM 597
            V L +F+E AR  L K  +DF  GGA+D  T  EN+ AF +I  RPR L DVS++D+ TTI   +ISAPI IAPT  H+LA P+GE++TARAA + +   + S  +S ++E+ VAA+   +R++QLYV   R I   ++Q+ E  GFKALV+TVD P++G R  DI N++
Sbjct:    4 VCLTDFREHAREHLSKSTWDFIEGGADDCCTRDENMAAFKKIRLRPRYLKDVSKVDMRTTIQGAEISAPICIAPTGFHRLAWPDGEMSTARAAQAASICYITSTYASCSLEDIVAAAPRGLRWFQLYVHPNRQINKQMIQKVESLGFKALVITVDVPKVGNRRNDITNQV 173          
BLAST of FC929840 vs. ExPASy Swiss-Prot
Match: CYB2_HANAN (Cytochrome b2, mitochondrial OS=Hansenula anomala GN=CYB2 PE=1 SV=2)

HSP 1 Score: 144.05 bits (362), Expect = 7.160e-34
Identity = 76/173 (43.93%), Postives = 108/173 (62.43%), Query Frame = 1
Query:   82 AEPVNLNEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSFTSSSTIEEVAAS--SNAVRFYQLYVFKKRDITATLVQRAERNGFKALVLTVDTPRLGRREADIKNK 594
            ++ +NL++F+ +AR  LP     +Y   A+DE TL+EN  A+HRI F P+IL+DV  +D+ST     K SAP  I+ TAL KL +PEGEVA A+ A   + + ++S  +S + +E+A +      ++YQLYV   R IT   V+ AE  G K L +TVD P LGRRE D+K K
Sbjct:  185 SQMINLHDFETIARQILPPPALAYYCSAADDEVTLRENHNAYHRIFFNPKILIDVKDVDISTEFFGEKTSAPFYISATALAKLGHPEGEVAIAKGAGREDVVQMISTLASCSFDEIADARIPGQQQWYQLYVNADRSITEKAVRHAEERGMKGLFITVDAPSLGRREKDMKMK 357          
BLAST of FC929840 vs. ExPASy Swiss-Prot
Match: HAOX2_RAT (Hydroxyacid oxidase 2 OS=Rattus norvegicus GN=Hao2 PE=1 SV=2)

HSP 1 Score: 143.28 bits (360), Expect = 1.221e-33
Identity = 80/170 (47.06%), Postives = 109/170 (64.12%), Query Frame = 1
Query:   91 VNLNEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSFTSSSTIEE-VAASSNAVRFYQLYVFKKRDITATLVQRAERNGFKALVLTVDTPRLGRREADIKNKM 597
            V L +F+  A+  L K  +DF  G A+D  T  EN+ AF RI  RPR L D+S++D  TTI   +ISAPI I+PTA H +A P+GE +TARAA   N   V+S  +S ++E+ VAA+    R++QLY+    D    +VQRAE  GFKALV+T+DTP LG R  D +N++
Sbjct:    4 VCLADFKAHAQKQLSKTSWDFIEGEADDGITYSENIAAFKRIRLRPRYLRDMSKVDTRTTIQGQEISAPICISPTAFHSIAWPDGEKSTARAAQEANICYVISSYASYSLEDIVAAAPEGFRWFQLYMKSDWDFNKQMVQRAEALGFKALVITIDTPVLGNRRRDKRNQL 173          
BLAST of FC929840 vs. ExPASy Swiss-Prot
Match: HAOX2_HUMAN (Hydroxyacid oxidase 2 OS=Homo sapiens GN=HAO2 PE=2 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 7.916e-33
Identity = 79/170 (46.47%), Postives = 105/170 (61.76%), Query Frame = 1
Query:   91 VNLNEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSFTSSSTIEE-VAASSNAVRFYQLYVFKKRDITATLVQRAERNGFKALVLTVDTPRLGRREADIKNKM 597
            V L +FQ  AR  L K   DF  GGA+D  T  +N+ AF RI  RPR L DVS +D  TTI   +ISAPI IAPT  H L  P+GE++TARAA +     + S  +S ++E+ V A+   +R++QLYV     +   L+QR E  GFKALV+T+DTP  G R  DI+N++
Sbjct:    4 VCLTDFQAHAREQLSKSTRDFIEGGADDSITRDDNIAAFKRIRLRPRYLRDVSEVDTRTTIQGEEISAPICIAPTGFHCLVWPDGEMSTARAAQAAGICYITSTFASCSLEDIVIAAPEGLRWFQLYVHPDLQLNKQLIQRVESLGFKALVITLDTPVCGNRRHDIRNQL 173          
The following BLAST results are available for this feature:
BLAST of FC929840 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 127
Match NameE-valueIdentityDescription
GOX_SPIOL3.410e-6061.62Peroxisomal (S)-2-hydroxy-acid oxidase OS=Spinacia... [more]
GOX2_ARATH2.444e-5859.46Probable peroxisomal (S)-2-hydroxy-acid oxidase 2 ... [more]
GOX1_ARATH2.702e-5758.38Probable peroxisomal (S)-2-hydroxy-acid oxidase 1 ... [more]
HAOX1_HUMAN1.140e-3941.84Hydroxyacid oxidase 1 OS=Homo sapiens GN=HAO1 PE=1... [more]
HAOX_DICDI4.791e-3844.22Hydroxyacid oxidase OS=Dictyostelium discoideum GN... [more]
HAOX1_MOUSE3.106e-3740.21Hydroxyacid oxidase 1 OS=Mus musculus GN=Hao1 PE=2... [more]
HAOX2_BOVIN7.650e-3647.65Hydroxyacid oxidase 2 OS=Bos taurus GN=HAO2 PE=2 S... [more]
CYB2_HANAN7.160e-3443.93Cytochrome b2, mitochondrial OS=Hansenula anomala ... [more]
HAOX2_RAT1.221e-3347.06Hydroxyacid oxidase 2 OS=Rattus norvegicus GN=Hao2... [more]
HAOX2_HUMAN7.916e-3346.47Hydroxyacid oxidase 2 OS=Homo sapiens GN=HAO2 PE=2... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34001A01EF PostHarvC1 Citrus clementina cDNA clone C34001A01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929840 ID=FC929840; Name=FC929840; organism=Citrus clementina; type=EST; length=703bp
GAAATCCAATCCTCGGTTTCTCTCTCTTCATTCAGAGATTGTTTTTTTGG
GGTGTATTTAGGAATTAGGTTTCAAATGGCAGCTGAACCTGTTAATTTGA
ATGAGTTCCAAGAATTGGCAAGGCTGGCCCTTCCAAAAATGTATTATGAT
TTCTACGCTGGTGGAGCAGAAGATGAACATACCCTAAAAGAGAATGTGGA
AGCCTTTCATAGAATTACGTTTCGGCCAAGAATTCTTGTCGATGTCAGCA
GAATAGATTTATCGACTACTATACTTGATTACAAAATCTCGGCTCCCATT
ATCATTGCTCCAACGGCTTTGCATAAGCTTGCAAACCCTGAAGGAGAGGT
AGCCACAGCCAGAGCAGCAGCTTCATGTAACACCATAATGGTTTTATCCT
TCACATCTAGCAGCACCATAGAGGAGGTTGCGGCCAGCTCCAATGCTGTT
CGCTTCTATCAATTATATGTATTCAAGAAACGAGATATAACAGCTACTCT
AGTGCAGAGAGCTGAAAGGAATGGTTTTAAGGCTCTTGTCCTAACTGTTG
ATACTCCAAGACTTGGTAGAAGGGAGGCAGATATAAAGAACAAAATGATT
ACACCGCCGTTGAAGAATTTGGAAGGCCTCTTATCAACCGAAGTCAGCTC
TGATACAGGTTCGAATTTTGAAGCTGATGCCCATGAGACCATGGATGCTT
CTT
back to top