FC929851

Overview
NameFC929851
Unique NameFC929851
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length722
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11981 contig Ccv1_Contig11981:137..859. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929851 vs. ExPASy Swiss-Prot
Match: GEML1_ARATH (GEM-like protein 1 OS=Arabidopsis thaliana GN=FIP1 PE=1 SV=1)

HSP 1 Score: 290.041 bits (741), Expect = 8.377e-78
Identity = 144/205 (70.24%), Postives = 167/205 (81.46%), Query Frame = 3
Query:   75 HSSDYAPYPKIDPNDVAPPPQNWSNVSTATGPAPI-NESAATTMPAESNPYVSPSPIEPSSSKNKLESVKGALSNWGKKAAEATKRAEDLAGNMWQHLKTGPSLADAAVGRIAQRTKVLAEGGYEKIFRQSFGTVPEEQLLKTYACYLSTSAGPVVGVLYLSTAKLAFCSDDPLSYKVGDQTQWSYYKVVIPLSQLKAVNPSTSK 686
            HSSDYAPYPK+DP DV PPP           P PI   +AATTMPAESNPYVSPSP    + +N ++SVK  L  WGK AA+ATK+AEDLAGN WQHLKTGPS+ADAAV RIAQ TK+LAEGGYEK+F+Q+F  +P+E+LLKTYACYLSTSAGPV+GV+YLST KLAF SD+PLSYK G+QT WSYYKVV+P +QLKAVNPSTS+
Sbjct:   28 HSSDYAPYPKLDPTDVTPPP-----------PQPIPTGAAATTMPAESNPYVSPSP----APRNTMDSVKDTLGKWGKMAADATKKAEDLAGNFWQHLKTGPSVADAAVSRIAQGTKILAEGGYEKVFKQTFDCLPDEKLLKTYACYLSTSAGPVLGVMYLSTHKLAFSSDNPLSYKEGEQTLWSYYKVVLPANQLKAVNPSTSR 217          
BLAST of FC929851 vs. ExPASy Swiss-Prot
Match: GEM_ARATH (GLABRA2 expression modulator OS=Arabidopsis thaliana GN=GEM PE=1 SV=1)

HSP 1 Score: 244.588 bits (623), Expect = 4.036e-64
Identity = 122/184 (66.30%), Postives = 146/184 (79.35%), Query Frame = 3
Query:  138 NWSNVSTATGPAPINESAATTMPAESNPYVSPSPIEPS--SSKNKLESVKGALSNWGKKAAEATKRAEDLAGNMWQHLKTGPSLADAAVGRIAQRTKVLAEGGYEKIFRQSFGTVPEEQLLKTYACYLSTSAGPVVGVLYLSTAKLAFCSDDPLSYKVGDQTQWSYYKVVIPLSQLKAVNPSTS 683
            +WS    +    P ++ AA++  A SNPY++ SP E S  S K+ +E+VKG L  WGK+ AEA K+ E LAGN WQHL+T PS ADAA+GRIAQ TKV AEGGYEKIFRQ+F T PEEQLL ++ACYLSTSAGPV+GVLY+S+AKLA+CSD+PLSYK GDQT+WSYYKVVIPL QLKAVNPS S
Sbjct:   71 HWSPELVSGSQEP-DQKAASSSSAGSNPYIARSPAETSDASLKDTMETVKGVLGRWGKRVAEAAKKTESLAGNTWQHLRTAPSFADAAMGRIAQSTKVFAEGGYEKIFRQTFETDPEEQLLNSFACYLSTSAGPVMGVLYISSAKLAYCSDNPLSYKNGDQTEWSYYKVVIPLHQLKAVNPSAS 253          
BLAST of FC929851 vs. ExPASy Swiss-Prot
Match: GEML3_ARATH (Putative GEM-like protein 3 OS=Arabidopsis thaliana GN=At4g40100 PE=3 SV=2)

HSP 1 Score: 185.652 bits (470), Expect = 1.930e-46
Identity = 102/184 (55.43%), Postives = 124/184 (67.39%), Query Frame = 3
Query:  138 NWSNVSTATGPAPINESAATTMPAESNPYVSPSPIEPS--SSKNKLESVKGALSNWGKKAAEATKRAEDLAGNMWQHLKTGPSLADAAVGRIAQRTKVLAEGGYEKIFRQSFGTVPEEQLLKTYACYLSTSAGPVVGVLYLSTAKLAFCSDDPLSYKVGDQTQWSYYKVVIPLSQLKAVNPSTS 683
            +W+    +  PAP  ++ +++  A SNPYV+ +P E S  S K  +ESVKG L  WG++  EA  +AE LAGN WQH         AA+GRIAQ TKVLAEGGYEKIFRQ+F TVPEEQL  ++ACYLSTSAGPV+GVLY+STAKLA+CSD  L              VVIPL QLK+VNPS S
Sbjct:   29 HWNPELVSESPAPDEKALSSSSAARSNPYVARAPTETSDASLKETMESVKGVLGRWGRRVGEAAMKAESLAGNTWQHPLR------AAMGRIAQSTKVLAEGGYEKIFRQTFETVPEEQLQNSFACYLSTSAGPVMGVLYVSTAKLAYCSDTSL--------------VVIPLHQLKSVNPSIS 192          

HSP 2 Score: 21.9422 bits (45), Expect = 1.930e-46
Identity = 9/10 (90.00%), Postives = 10/10 (100.00%), Query Frame = 2
Query:  692 PAEEYIQVIS 721
            PAE+YIQVIS
Sbjct:  196 PAEKYIQVIS 205          
BLAST of FC929851 vs. ExPASy Swiss-Prot
Match: GEML5_ARATH (GEM-like protein 5 OS=Arabidopsis thaliana GN=At5g13200 PE=1 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 2.017e-39
Identity = 86/218 (39.45%), Postives = 125/218 (57.34%), Query Frame = 3
Query:   63 QQEPHSSDYAPYPKIDPNDVAPPPQNWSNVSTATGPAPI----NESAATTMPAESN-----PYVSPSPIEPSSSKNKLESVKGALSNWGKKAAEATKRAEDLAGNMWQHLKTGPSLADAAVGRIAQRTKVLAEGGYEKIFRQSFGTVPEEQLLKTYACYLSTSAGPVVGVLYLSTAKLAFCSDDPLSYKV-GDQTQWSYYKVVIPLSQLKAVNPSTSK 686
            Q++P + +    P  +P+  +P  + W         AP+    N+ AA  +  ++      PYV  SP+E  ++ N LE V G    W +KA       E +A N+W +LKTGPS+++ A G++    K + +GG+E +FRQ FGT P E L KT+ACYLST+ GPV G +YLS A++AFCSD PL +     Q  WSYY+VV+PL+ +  VNP   K
Sbjct:   15 QEQPKTLETEHQP--EPSSSSPDQKKWGTHVMGAPAAPVAHPDNQQAAAWVAGDNQQTQYQPYVIYSPVEHPTTNNPLEPVIGMFHTWSRKA-------ETVARNLWHNLKTGPSMSETAWGKVNLTAKAITKGGFESLFRQIFGTEPNETLKKTFACYLSTTTGPVAGTVYLSNARVAFCSDRPLYFTAPSGQESWSYYRVVVPLANVATVNPVVVK 223          
BLAST of FC929851 vs. ExPASy Swiss-Prot
Match: GEML2_ARATH (GEM-like protein 2 OS=Arabidopsis thaliana GN=At4g01600 PE=2 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.311e-30
Identity = 67/164 (40.85%), Postives = 106/164 (64.63%), Query Frame = 3
Query:  216 NPYVSPSPIEPSSSKNKLESVKGALSNWGKKAAEATKRAEDLAGNMWQHLKTGPSLADAAVGRIAQRTKVLAEGGYEKIFRQSFGTVPEEQLLKTYACYLSTSAGPVVGVLYLSTAKLAFCSDDP--LSYKVGDQTQWSYYKVVIPLSQLKAVNPSTS--KPSQ 695
            NPYV  +    +S K   + V   L+  GKK  +AT++AE L G +  HLK  PS++DAA+ R++Q TK++ EGG E++F++ FG +  E+LL ++ CY+ST++GPV GV+Y+S  ++AFCSD    L    G     +YYKVV+   ++ +++ ST+  KPS+
Sbjct:   29 NPYVHITSPTSASDKRSKDKVLEVLNRCGKKVEDATRKAEALVGGLKDHLKFSPSISDAAMARLSQGTKMIVEGGPERVFQREFGVLAVEKLLDSFVCYISTTSGPVTGVIYISNRRIAFCSDYAIRLPSSAGGNGVAAYYKVVMEWEKISSISSSTNVLKPSE 192          
BLAST of FC929851 vs. ExPASy Swiss-Prot
Match: GEML8_ARATH (Putative GEM-like protein 8 OS=Arabidopsis thaliana GN=At5g23370 PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.151e-18
Identity = 64/178 (35.96%), Postives = 94/178 (52.81%), Query Frame = 3
Query:  189 AATTMPAESNPYVSPSPIE----PSSSKNKLESVKGALSNWGKKAAEATKRAEDLAGNMWQHLKTGPSLADAAVGRIAQRTKVLAEGGYEKIFRQSFGTVPEEQLLKTYACYLSTSAGPVVGVLYLSTAKLAFCSDDPLSYKVGD---QTQWSYYKVVIPLSQLKAVNPS--TSKPSQ 695
            A  T PA   P   P+ I     P+SSK    + KG       K+    K+ +     +    K GP L +    +++   ++L  GG EKI+++ F    EE+L K Y CYLST+AGP+ G+L++S+ K+AFCS+   S KV     +    +YKV IPL ++  VN S  T+KPSQ
Sbjct:   15 AVKTSPAGYLP--DPASINKLQIPTSSKFSFLTGKG-------KSMLRKKKNDSFTNGVRDQDKLGPKLTETVKRKLSLGARILQMGGLEKIYKRLFKVSDEEKLFKAYQCYLSTTAGPIAGLLFISSKKIAFCSE--RSIKVASPQGELNRVHYKVSIPLCKINGVNQSQNTTKPSQ 181          
BLAST of FC929851 vs. ExPASy Swiss-Prot
Match: GEML6_ARATH (GEM-like protein 6 OS=Arabidopsis thaliana GN=At5g23350 PE=2 SV=2)

HSP 1 Score: 92.4337 bits (228), Expect = 2.564e-18
Identity = 60/155 (38.71%), Postives = 83/155 (53.55%), Query Frame = 3
Query:  246 PSSSKNKLESVKGALSNWGKKAAEATKRAEDLAGNMWQHLKTGPSLADAAVGRIAQRTKVLAEGGYEKIFRQSFGTVPEEQLLKTYACYLSTSAGPVVGVLYLSTAKLAFCSDDPLSYKVGDQ---TQWSYYKVVIPLSQLKAVNPS--TSKPSQ 695
            P+SSK    + KG      KK    T  A D         K GP L +    +++   K+L  GG EKI+++ F    +E+L K Y CYLST+AGP+ G+L++S+ K+AFCS+   S KV          +YKV IPL ++  VN S  T KPSQ
Sbjct:   36 PTSSKVSYLTGKGKSMLRKKKTDSFTNGARDQD-------KLGPKLTETVKRKLSLGAKILQMGGLEKIYKRLFKVCDQEKLFKAYQCYLSTTAGPIAGLLFISSKKIAFCSE--RSIKVASPQGVLSRVHYKVSIPLCKINGVNQSQNTKKPSQ 181          
BLAST of FC929851 vs. ExPASy Swiss-Prot
Match: GEML4_ARATH (GEM-like protein 4 OS=Arabidopsis thaliana GN=At5g08350 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.662e-17
Identity = 61/170 (35.88%), Postives = 89/170 (52.35%), Query Frame = 3
Query:  204 PAESNPYVSPSPIEPSSSKNKLESVKGALSNWGKKAAEATKRAEDLAGNMWQHLKTGPSLADAAVGRIAQRTKVLAEGGYEKIFRQSFGTVPEEQLLKTYACYLSTSAGPVVGVLYLSTAKLAFCSDDPLSYKVGDQTQWS----YYKVVIPLSQLKAVNPS--TSKPSQ 695
            PA  N +  P+    SS K++  +VK  L           K+ +     +    K  P L +    +++   ++L  GG EKIF++ F     E+L K Y CYLST+AGP+ G+L++S+ K+AFCS+   S KV D  Q      +YKV IPL ++  VN S  T KPSQ
Sbjct:   27 PASFNKFRVPA----SSKKSEQSNVKSILKR---------KKTDGFTNGVRDQSKIRPKLTETVKRKLSLGARILQVGGLEKIFKRLFRVSEGEKLFKMYQCYLSTTAGPIAGLLFISSKKMAFCSE--RSIKV-DSPQGDIIRVHYKVSIPLCKIDRVNQSQNTKKPSQ 180          
BLAST of FC929851 vs. ExPASy Swiss-Prot
Match: GEML7_ARATH (GEM-like protein 7 OS=Arabidopsis thaliana GN=At5g23360 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.835e-17
Identity = 57/167 (34.13%), Postives = 91/167 (54.49%), Query Frame = 3
Query:  219 PYVSPSPI----EPSSSKNKLESVKGALSNWGKKAAEATKRAEDLAGNMWQHLKTGPSLADAAVGRIAQRTKVLAEGGYEKIFRQSFGTVPEEQLLKTYACYLSTSAGPVVGVLYLSTAKLAFCSDDPL--SYKVGDQTQWSYYKVVIPLSQLKAVNPS--TSKPSQ 695
            P V+ +P+    +P+S  NKL+     +    K +    K+ +          K GP L +    +++   K+L  GG EKI+++ F    +E+L K Y CYLST+ G + G+L++S+ K+AFCS+  +  +   GD T+  +YKV IPL ++  VN S  T KPSQ
Sbjct:   14 PAVNTAPVGYLPDPASI-NKLQ-----IPTSSKVSMLQKKKTDSFTNGARDQDKLGPKLTETVKRKLSLGAKILQMGGLEKIYKRLFKVCDKEKLFKAYQCYLSTTEGSIAGLLFISSKKIAFCSERSIKVTSPQGDLTR-VHYKVSIPLCKINGVNQSQNTKKPSQ 173          
The following BLAST results are available for this feature:
BLAST of FC929851 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
GEML1_ARATH8.377e-7870.24GEM-like protein 1 OS=Arabidopsis thaliana GN=FIP1... [more]
GEM_ARATH4.036e-6466.30GLABRA2 expression modulator OS=Arabidopsis thalia... [more]
GEML3_ARATH1.930e-4655.43Putative GEM-like protein 3 OS=Arabidopsis thalian... [more]
GEML5_ARATH2.017e-3939.45GEM-like protein 5 OS=Arabidopsis thaliana GN=At5g... [more]
GEML2_ARATH1.311e-3040.85GEM-like protein 2 OS=Arabidopsis thaliana GN=At4g... [more]
GEML8_ARATH1.151e-1835.96Putative GEM-like protein 8 OS=Arabidopsis thalian... [more]
GEML6_ARATH2.564e-1838.71GEM-like protein 6 OS=Arabidopsis thaliana GN=At5g... [more]
GEML4_ARATH1.662e-1735.88GEM-like protein 4 OS=Arabidopsis thaliana GN=At5g... [more]
GEML7_ARATH4.835e-1734.13GEM-like protein 7 OS=Arabidopsis thaliana GN=At5g... [more]
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Properties
Property NameValue
Genbank descriptionC34001B03EF PostHarvC1 Citrus clementina cDNA clone C34001B03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929851 ID=FC929851; Name=FC929851; organism=Citrus clementina; type=EST; length=722bp
GGCAACAAGCCGATCATCAAATTGAAACCAAAGCTTCTTCAGAGACCCAC
CATATGCAGCAACAGCAAGAACCTCACTCATCTGACTACGCTCCTTACCC
TAAGATTGACCCAAACGACGTCGCTCCACCTCCTCAAAATTGGTCGAACG
TGTCCACGGCCACGGGGCCAGCGCCTATCAACGAGAGTGCCGCCACCACC
ATGCCTGCAGAATCCAATCCCTACGTGTCCCCCTCTCCGATTGAGCCATC
CTCCTCAAAGAATAAGCTGGAGTCAGTGAAGGGCGCGTTGTCAAATTGGG
GGAAGAAGGCAGCGGAGGCTACGAAGAGAGCTGAGGATCTCGCCGGCAAT
ATGTGGCAGCACTTGAAAACTGGCCCTAGTCTTGCTGATGCTGCCGTGGG
AAGAATTGCACAGAGAACAAAAGTGCTCGCTGAAGGTGGATACGAGAAGA
TCTTTCGACAAAGTTTTGGCACTGTTCCTGAGGAACAACTCCTGAAGACT
TATGCATGCTACCTATCTACATCTGCCGGTCCCGTAGTGGGAGTTTTATA
TTTGTCGACTGCAAAGCTTGCATTTTGTAGTGATGACCCTCTGTCTTACA
AAGTAGGTGATCAGACGCAATGGAGCTATTATAAGGTGGTTATTCCATTG
AGTCAGCTGAAAGCAGTCAATCCCTCAACAAGCAAGCCAAGCCAGCTGAA
GAATATATCCAGGTCATCTCTG
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