FC929852

Overview
NameFC929852
Unique NameFC929852
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length704
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15055 contig Ccv1_Contig15055:1..704. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929852 vs. ExPASy Swiss-Prot
Match: TRXB2_ARATH (Thioredoxin reductase 2 OS=Arabidopsis thaliana GN=NTR2 PE=2 SV=2)

HSP 1 Score: 270.011 bits (689), Expect = 8.651e-72
Identity = 131/182 (71.98%), Postives = 154/182 (84.62%), Query Frame = 1
Query:  151 EIQTLKTKVCIIGSGPXXXXXXXXXXXXELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQIFTETVSKVDFKSRPFKVFTDSKSVLADTVIVATGAVAKKLQFPGS----DAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEESHFLTKYGSK 684
            +++T KTKVCI+GSGP            ELKP+LFEGWMANDIAPGGQLTTT+DVENFPGFP+GILG D++++ R QS RFGT IFTETV+KVDF S+PFK+FTDS++VLAD+VI++TGAVAK+L F GS      FWNRGISACAVCDGAAPIFR+KPL VIGGGDSAMEE++FLTKYGSK
Sbjct:   53 DMETHKTKVCIVGSGPAAHTAAIYASRAELKPLLFEGWMANDIAPGGQLTTTTDVENFPGFPEGILGIDIVEKFRKQSERFGTTIFTETVNKVDFSSKPFKLFTDSRTVLADSVIISTGAVAKRLSFTGSGEGNGGFWNRGISACAVCDGAAPIFRNKPLVVIGGGDSAMEEANFLTKYGSK 234          
BLAST of FC929852 vs. ExPASy Swiss-Prot
Match: TRXB1_ARATH (Thioredoxin reductase 1 OS=Arabidopsis thaliana GN=NTR1 PE=1 SV=2)

HSP 1 Score: 269.24 bits (687), Expect = 1.476e-71
Identity = 132/184 (71.74%), Postives = 153/184 (83.15%), Query Frame = 1
Query:  145 MDEIQTLKTKVCIIGSGPXXXXXXXXXXXXELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQIFTETVSKVDFKSRPFKVFTDSKSVLADTVIVATGAVAKKLQFPG----SDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEESHFLTKYGSK 684
            M+ ++T  T++CI+GSGP            ELKP+LFEGWMANDIAPGGQLTTT+DVENFPGFP+GILG +L D+ R QS RFGT IFTETV+KVDF S+PFK+FTDSK++LAD VI+ATGAVAK+L F G    S  FWNRGISACAVCDGAAPIFR+KPLAVIGGGDSAMEE++FLTKYGSK
Sbjct:    1 MNGLETHNTRLCIVGSGPAAHTAAIYAARAELKPLLFEGWMANDIAPGGQLTTTTDVENFPGFPEGILGVELTDKFRKQSERFGTTIFTETVTKVDFSSKPFKLFTDSKAILADAVILATGAVAKRLSFVGSGEASGGFWNRGISACAVCDGAAPIFRNKPLAVIGGGDSAMEEANFLTKYGSK 184          
BLAST of FC929852 vs. ExPASy Swiss-Prot
Match: TRXB1_YEAST (Thioredoxin reductase 1 OS=Saccharomyces cerevisiae GN=TRR1 PE=1 SV=3)

HSP 1 Score: 227.639 bits (579), Expect = 4.924e-59
Identity = 110/175 (62.86%), Postives = 133/175 (76.00%), Query Frame = 1
Query:  172 KVCIIGSGPXXXXXXXXXXXXELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQIFTETVSKVDFKSRPFKVFT----DSKSVLADTVIVATGAVAKKLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEESHFLTKYGSK 684
            KV IIGSGP            E+KPIL+EG MAN IA GGQLTTT+++ENFPGFP G+ G +LMDR R QS +FGT+I TETVSKVD  S+PFK++T    D++ V  D +I+ATGA AK++  PG + +W +GISACAVCDGA PIFR+KPLAVIGGGDSA EE+ FLTKYGSK
Sbjct:    5 KVTIIGSGPAAHTAAIYLARAEIKPILYEGMMANGIAAGGQLTTTTEIENFPGFPDGLTGSELMDRMREQSTKFGTEIITETVSKVDLSSKPFKLWTEFNEDAEPVTTDAIILATGASAKRMHLPGEETYWQKGISACAVCDGAVPIFRNKPLAVIGGGDSACEEAQFLTKYGSK 179          
BLAST of FC929852 vs. ExPASy Swiss-Prot
Match: TRXB_CANGA (Thioredoxin reductase OS=Candida glabrata GN=TRR1 PE=3 SV=1)

HSP 1 Score: 222.246 bits (565), Expect = 2.069e-57
Identity = 105/175 (60.00%), Postives = 131/175 (74.86%), Query Frame = 1
Query:  172 KVCIIGSGPXXXXXXXXXXXXELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQIFTETVSKVDFKSRPFKVFT----DSKSVLADTVIVATGAVAKKLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEESHFLTKYGSK 684
            KV IIGSGP            E+KP ++EG +AN IA GGQLTTT+++ENFPGFP G+ G +LMDR R QS +FGT+I TET++KVD  SRPFK++T    D + +  D +++ATGA AK+L  PG + +W +GISACAVCDGA PIFR+KPLAVIGGGDSA EE+ FLTKYGSK
Sbjct:    5 KVVIIGSGPAAHTAAIYLARAEIKPTMYEGMLANGIAAGGQLTTTTEIENFPGFPDGMTGSELMDRMRAQSTKFGTEIITETIAKVDLSSRPFKLWTEFNEDGEPITTDAIVIATGASAKRLHIPGEETYWQQGISACAVCDGAVPIFRNKPLAVIGGGDSACEEAQFLTKYGSK 179          
BLAST of FC929852 vs. ExPASy Swiss-Prot
Match: TRXB_DEBHA (Thioredoxin reductase OS=Debaryomyces hansenii GN=TRR1 PE=3 SV=1)

HSP 1 Score: 221.861 bits (564), Expect = 2.702e-57
Identity = 108/174 (62.07%), Postives = 130/174 (74.71%), Query Frame = 1
Query:  175 VCIIGSGPXXXXXXXXXXXXELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQIFTETVSKVDFKSRPFKVFT----DSKSVLADTVIVATGAVAKKLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEESHFLTKYGSK 684
            V IIGSGP            E+KP L+EG +AN  A GGQLTTT+DVENFPGFP+GI G +LMD+ R QS+RFGT I TET+SK D  SRPFK++T    DS+ +  D V++ATGA AK++  PG D +W +GISACAVCDGA PIFR+KPLAV+GGGDSA EE+ FLTKYGSK
Sbjct:    6 VTIIGSGPAAHTAAIYLSRAEIKPTLYEGMLANGTAAGGQLTTTTDVENFPGFPKGINGTELMDQMREQSVRFGTDIITETISKCDLSSRPFKLWTEWNEDSEPITTDAVVIATGASAKRMHLPGEDTYWQQGISACAVCDGAVPIFRNKPLAVVGGGDSACEEALFLTKYGSK 179          
BLAST of FC929852 vs. ExPASy Swiss-Prot
Match: TRXB_KLULA (Thioredoxin reductase, mitochondrial OS=Kluyveromyces lactis GN=TRR1 PE=3 SV=1)

HSP 1 Score: 221.476 bits (563), Expect = 3.529e-57
Identity = 107/175 (61.14%), Postives = 130/175 (74.29%), Query Frame = 1
Query:  172 KVCIIGSGPXXXXXXXXXXXXELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQIFTETVSKVDFKSRPFKVFT----DSKSVLADTVIVATGAVAKKLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEESHFLTKYGSK 684
            KV IIGSGP            E+KP L+EG+MAN IA GGQLTTT+++ENFPGFP G+ G +LMDR + QS++FGT + TETVSKVD  SRPFK +T    D +    D +I++TGA AK+L  PG + +W +GISACAVCDGA PIFR+KPLAVIGGGDSA EE+ FLTKYGSK
Sbjct:   35 KVTIIGSGPAAHTAAIYLARAEIKPTLYEGFMANGIAAGGQLTTTTEIENFPGFPDGLTGSELMDRMKAQSIKFGTDVITETVSKVDLSSRPFKFWTEFNEDQEPETTDAIILSTGASAKRLHLPGEETYWQQGISACAVCDGAVPIFRNKPLAVIGGGDSACEEAQFLTKYGSK 209          
BLAST of FC929852 vs. ExPASy Swiss-Prot
Match: TRXB_YARLI (Thioredoxin reductase OS=Yarrowia lipolytica GN=TRR1 PE=3 SV=1)

HSP 1 Score: 220.32 bits (560), Expect = 7.861e-57
Identity = 109/174 (62.64%), Postives = 128/174 (73.56%), Query Frame = 1
Query:  175 VCIIGSGPXXXXXXXXXXXXELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQIFTETVSKVDFKSRPFKVFT----DSKSVLADTVIVATGAVAKKLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEESHFLTKYGSK 684
            V IIGSGP            E+KP L+EG MAN IA GGQLTTT+++ENFPGFP GI+G  LM+  R QS+RFGT+I TETVSKVD   RPFK +T    D +   AD +I+ATGA AK+L  PG D +W +GISACAVCDGA PIFR+KPLAV+GGGDSA EE+ FLTKYGSK
Sbjct:    6 VVIIGSGPAAHTAAIYLSRAEIKPTLYEGMMANGIAAGGQLTTTTEIENFPGFPDGIMGSQLMEDMRKQSIRFGTEIITETVSKVDLSQRPFKYWTEFNEDEEPHTADAIILATGASAKRLSLPGEDQYWQQGISACAVCDGAVPIFRNKPLAVVGGGDSAAEEALFLTKYGSK 179          
BLAST of FC929852 vs. ExPASy Swiss-Prot
Match: TRXB2_YEAST (Thioredoxin reductase 2, mitochondrial OS=Saccharomyces cerevisiae GN=TRR2 PE=1 SV=1)

HSP 1 Score: 219.164 bits (557), Expect = 1.751e-56
Identity = 106/175 (60.57%), Postives = 130/175 (74.29%), Query Frame = 1
Query:  172 KVCIIGSGPXXXXXXXXXXXXELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQIFTETVSKVDFKSRPFKVFT----DSKSVLADTVIVATGAVAKKLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEESHFLTKYGSK 684
            KV IIGSGP            E+KP L+EG MAN IA GGQLTTT+D+ENFPGFP+ + G +LM+R R QS +FGT I TETVSKVD  S+PF+++T    D++ V  D +I+ATGA AK++  PG + +W +GISACAVCDGA PIFR+KPLAVIGGGDSA EE+ FLTKY SK
Sbjct:   28 KVTIIGSGPAAHTAAIYLARAEMKPTLYEGMMANGIAAGGQLTTTTDIENFPGFPESLSGSELMERMRKQSAKFGTNIITETVSKVDLSSKPFRLWTEFNEDAEPVTTDAIILATGASAKRMHLPGEETYWQQGISACAVCDGAVPIFRNKPLAVIGGGDSACEEAEFLTKYASK 202          
BLAST of FC929852 vs. ExPASy Swiss-Prot
Match: TRXB_ASHGO (Thioredoxin reductase OS=Ashbya gossypii GN=TRR1 PE=3 SV=2)

HSP 1 Score: 218.779 bits (556), Expect = 2.287e-56
Identity = 104/175 (59.43%), Postives = 130/175 (74.29%), Query Frame = 1
Query:  172 KVCIIGSGPXXXXXXXXXXXXELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQIFTETVSKVDFKSRPFKVFT----DSKSVLADTVIVATGAVAKKLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEESHFLTKYGSK 684
            KV IIGSGP            E+KP L+EG  AN +A GGQLTTT+++ENFPGFP G+ G DLM+R + QS++FGT++ TETV+KVD  +RPFK++T    D +    D +I+ATGA AK+L  PG + +W RGISACAVCDGA PIFR+KPLAV+GGGDSA EE+ FLTKYGSK
Sbjct:    5 KVTIIGSGPAAHTAAIYLARAEIKPTLYEGMFANGVAAGGQLTTTTEIENFPGFPDGLTGSDLMERMKAQSVKFGTEVVTETVAKVDLSARPFKLWTEFNEDEEPTTTDAIILATGASAKRLGLPGEETYWQRGISACAVCDGAVPIFRNKPLAVVGGGDSACEEASFLTKYGSK 179          
BLAST of FC929852 vs. ExPASy Swiss-Prot
Match: TRXB_PNECA (Thioredoxin reductase OS=Pneumocystis carinii GN=TRR1 PE=2 SV=1)

HSP 1 Score: 216.083 bits (549), Expect = 1.483e-55
Identity = 108/177 (61.02%), Postives = 129/177 (72.88%), Query Frame = 1
Query:  163 LKTKVCIIGSGPXXXXXXXXXXXXELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQIFTETVSKVDFKSRPFKVFTDSKSVL---ADTVIVATGAVAKKLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEESHFLTKYGSK 684
            + +KV IIGSGP            ELKPIL+EG +AN IAPGGQLTTT+DVEN+PGFP GILG  LM+  R QS ++G QI T+TVSK+D   RPFK   +S   +   AD VI+ATGA A++L  PG + +W RGISACAVCDGAAPIFR KPLAV+GGGDSA EES FLT+Y +K
Sbjct:    1 MHSKVVIIGSGPSGHTAAIYLGRAELKPILYEGMLANGIAPGGQLTTTTDVENYPGFPDGILGPSLMEAFRKQSEKYGAQIITDTVSKLDLSKRPFKYCCESNEEVFHTADVVILATGAYARRLNIPGEEIYWQRGISACAVCDGAAPIFRGKPLAVVGGGDSAAEESLFLTRYATK 177          
The following BLAST results are available for this feature:
BLAST of FC929852 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 70
Match NameE-valueIdentityDescription
TRXB2_ARATH8.651e-7271.98Thioredoxin reductase 2 OS=Arabidopsis thaliana GN... [more]
TRXB1_ARATH1.476e-7171.74Thioredoxin reductase 1 OS=Arabidopsis thaliana GN... [more]
TRXB1_YEAST4.924e-5962.86Thioredoxin reductase 1 OS=Saccharomyces cerevisia... [more]
TRXB_CANGA2.069e-5760.00Thioredoxin reductase OS=Candida glabrata GN=TRR1 ... [more]
TRXB_DEBHA2.702e-5762.07Thioredoxin reductase OS=Debaryomyces hansenii GN=... [more]
TRXB_KLULA3.529e-5761.14Thioredoxin reductase, mitochondrial OS=Kluyveromy... [more]
TRXB_YARLI7.861e-5762.64Thioredoxin reductase OS=Yarrowia lipolytica GN=TR... [more]
TRXB2_YEAST1.751e-5660.57Thioredoxin reductase 2, mitochondrial OS=Saccharo... [more]
TRXB_ASHGO2.287e-5659.43Thioredoxin reductase OS=Ashbya gossypii GN=TRR1 P... [more]
TRXB_PNECA1.483e-5561.02Thioredoxin reductase OS=Pneumocystis carinii GN=T... [more]

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Properties
Property NameValue
Genbank descriptionC34001B04EF PostHarvC1 Citrus clementina cDNA clone C34001B04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929852 ID=FC929852; Name=FC929852; organism=Citrus clementina; type=EST; length=704bp
GATAGAAGCCCTAATGGTAATACTACTCTTAAGCTGAGATCACTGCTGAC
CAAAGCACGAACCTTTTTTGGAATTGTAACTACTTCCTCCGCCGCGGCCG
CCGCTTCTTTTTCCGCAACCACCGCTCCCAAGATCAGCAACGCCATGGAC
GAAATACAAACCCTCAAGACCAAAGTCTGCATCATTGGCAGCGGCCCCGC
CGCCCACACTGCCGCCATCTATGCCGCCCGAGCCGAGCTCAAACCCATTC
TCTTCGAGGGCTGGATGGCCAATGATATTGCGCCTGGTGGCCAACTCACC
ACCACCTCCGACGTCGAGAATTTCCCCGGTTTTCCCCAGGGCATTCTCGG
GGGCGACTTGATGGATCGCTGCCGCAACCAGTCTCTCCGTTTCGGCACCC
AGATTTTTACCGAGACCGTTTCCAAAGTCGACTTCAAATCCCGCCCTTTT
AAAGTTTTTACAGATTCCAAATCCGTTCTTGCTGATACTGTTATTGTCGC
CACCGGCGCCGTTGCCAAAAAGTTGCAATTCCCCGGTTCAGATGCGTTCT
GGAACCGTGGCATATCGGCCTGCGCAGTGTGTGATGGAGCCGCTCCGATA
TTTCGGGACAAACCCTTGGCCGTGATTGGTGGCGGGGATTCAGCCATGGA
AGAAAGCCACTTTTTGACAAAGTACGGATCAAAGTTTATATATTCATAGG
AGGG
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