FC929859

Overview
NameFC929859
Unique NameFC929859
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length689
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14478 contig Ccv1_Contig14478:1..689. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929859 vs. ExPASy Swiss-Prot
Match: IN21B_ORYSJ (Protein IN2-1 homolog B OS=Oryza sativa subsp. japonica GN=GSTZ5 PE=2 SV=1)

HSP 1 Score: 275.018 bits (702), Expect = 2.578e-73
Identity = 131/202 (64.85%), Postives = 159/202 (78.71%), Query Frame = 3
Query:   84 ATTAQENLPPPLDSKAELPPLFDGTPRLYMSYSCPFAQRAWITRNYKGLQDKIKLVPLNLQDRPAWYKEKVYPVNKIPALEHNGKVIGESLDLIKYVDSNFEGPSLLPDDPEKRKFADELFSHIDTFTNDVYTSF--KGDPAKQAGPAFDYLEKALDKFDDGPFFLGQFSQVDIAYIPFVERFQIFLSEEFKYDITAXRPKL 683
            A++ +E LPP L S +E PPLFDGT RLY++Y CP+AQRAWI RNYKGLQDKIK+V ++L DRPAWYKEKVYP NK+P+LEHN +V GESLDL+KY+D+NFEGP+LLPDD EK++FA+EL ++ D F    Y+S   KGD   +A  A D +E AL KF+DGPFFLGQFS VDIAY+PF+ERFQIF S    YDIT  RP L
Sbjct:    9 ASSEKEVLPPSLTSSSEPPPLFDGTTRLYVAYHCPYAQRAWIARNYKGLQDKIKIVAIDLADRPAWYKEKVYPENKVPSLEHNNQVKGESLDLVKYIDTNFEGPALLPDDSEKQQFAEELLAYTDAFNKASYSSIVAKGDVCDEAVAALDKIEAALSKFNDGPFFLGQFSLVDIAYVPFIERFQIFFSGIKNYDITKGRPNL 210          
BLAST of FC929859 vs. ExPASy Swiss-Prot
Match: IN21B_ORYSI (Protein IN2-1 homolog B OS=Oryza sativa subsp. indica GN=GSTZ5 PE=1 SV=1)

HSP 1 Score: 275.018 bits (702), Expect = 2.578e-73
Identity = 131/202 (64.85%), Postives = 159/202 (78.71%), Query Frame = 3
Query:   84 ATTAQENLPPPLDSKAELPPLFDGTPRLYMSYSCPFAQRAWITRNYKGLQDKIKLVPLNLQDRPAWYKEKVYPVNKIPALEHNGKVIGESLDLIKYVDSNFEGPSLLPDDPEKRKFADELFSHIDTFTNDVYTSF--KGDPAKQAGPAFDYLEKALDKFDDGPFFLGQFSQVDIAYIPFVERFQIFLSEEFKYDITAXRPKL 683
            A++ +E LPP L S +E PPLFDGT RLY++Y CP+AQRAWI RNYKGLQDKIK+V ++L DRPAWYKEKVYP NK+P+LEHN +V GESLDL+KY+D+NFEGP+LLPDD EK++FA+EL ++ D F    Y+S   KGD   +A  A D +E AL KF+DGPFFLGQFS VDIAY+PF+ERFQIF S    YDIT  RP L
Sbjct:    9 ASSEKEVLPPSLTSSSEPPPLFDGTTRLYVAYHCPYAQRAWIARNYKGLQDKIKIVAIDLADRPAWYKEKVYPENKVPSLEHNNQVKGESLDLVKYIDTNFEGPALLPDDSEKQQFAEELLAYTDAFNKASYSSIVAKGDVCDEAVAALDKIEAALSKFNDGPFFLGQFSLVDIAYVPFIERFQIFFSGIKNYDITKGRPNL 210          
BLAST of FC929859 vs. ExPASy Swiss-Prot
Match: IN21A_ORYSJ (Protein IN2-1 homolog A OS=Oryza sativa subsp. japonica GN=Os03g0283200 PE=2 SV=1)

HSP 1 Score: 253.062 bits (645), Expect = 1.049e-66
Identity = 122/201 (60.70%), Postives = 153/201 (76.12%), Query Frame = 3
Query:   87 TTAQENLPPPLDSKAELPPLFDGTPRLYMSYSCPFAQRAWITRNYKGLQDKIKLVPLNLQDRPAWYKEKVYPVNKIPALEHNGKVIGESLDLIKYVDSNFEGPSLLPDDPEKRKFADELFSHIDTFTNDVYTSF--KGDPAKQAGPAFDYLEKALDKFDDGPFFLGQFSQVDIAYIPFVERFQIFLSEEFKYDITAXRPKL 683
            ++ +E LP  L S +E P LFDGT RLY+ Y CPFAQRAWI RN+KGLQDKI+LV ++LQD+PAWYKEKVY    +P+LEHNGK++GESLDLIKY+DS+FEGP+LLP+DPEKR+FADEL ++ + FT  +Y+    K D + +   A D +E AL KF DGPFFLGQFS VDIAY+  +ER QI+ S   KY+IT  RP L
Sbjct:    9 SSGKEALPAALGSASEPPRLFDGTTRLYICYFCPFAQRAWIIRNFKGLQDKIELVGIDLQDKPAWYKEKVYEQGTVPSLEHNGKIMGESLDLIKYIDSHFEGPALLPEDPEKRQFADELIAYANAFTKALYSPLISKADLSAETVAALDKIEAALSKFGDGPFFLGQFSLVDIAYVTIIERIQIYYSHIRKYEITNGRPNL 209          
BLAST of FC929859 vs. ExPASy Swiss-Prot
Match: IN21_MAIZE (Protein IN2-1 OS=Zea mays GN=IN2-1 PE=2 SV=1)

HSP 1 Score: 238.424 bits (607), Expect = 2.674e-62
Identity = 113/202 (55.94%), Postives = 148/202 (73.27%), Query Frame = 3
Query:   84 ATTAQENLPPPLDSKAELPPLFDGTPRLYMSYSCPFAQRAWITRNYKGLQDKIKLVPLNLQDRPAWYKEKVYPVNKIPALEHNGKVIGESLDLIKYVDSNFEGPSLLPDDPEKRKFADELFSHIDTFTNDVYTSFKGDPA--KQAGPAFDYLEKALDKFDDGPFFLGQFSQVDIAYIPFVERFQIFLSEEFKYDITAXRPKL 683
            +++ +E+LPP L S ++ PP+FDGT RLY+ Y CPFAQRAW+TRN KGLQDK++LV ++LQD+PAWYK+KVY    +P+LEH+ +V GESLDLI+Y+DSNF+GP+LLP+D  KR+FADELF+  + FT  +Y+      A   +   A D LE  L KFDDGPFFLGQFS  D+AY+  +ER QI+ S    YDI   RP L
Sbjct:    8 SSSVKESLPPALGSTSQPPPVFDGTTRLYICYFCPFAQRAWVTRNLKGLQDKMELVAIDLQDKPAWYKDKVYAQGTVPSLEHDSEVRGESLDLIRYIDSNFDGPALLPEDAAKRQFADELFASANAFTKALYSPLLSHAAVSDEVVAALDKLEADLSKFDDGPFFLGQFSLADVAYVTILERVQIYYSHLRNYDIAQGRPNL 209          
BLAST of FC929859 vs. ExPASy Swiss-Prot
Match: GSTO1_HUMAN (Glutathione S-transferase omega-1 OS=Homo sapiens GN=GSTO1 PE=1 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 5.654e-12
Identity = 51/171 (29.82%), Postives = 88/171 (51.46%), Query Frame = 3
Query:  141 PLFDGTPRLYMSYSCPFAQRAWITRNYKGLQDKIKLVPLNLQDRPAWYKEKVYPVNKIPALEHN-GKVIGESLDLIKYVDSNFEGPSLLPDDPEKR---KFADELFSHIDTFTND-VYTSFKGDPA---KQAGPAFDYLEKALDKFDDGPFFLGQFSQVDIAYIPFVERFQ 629
            P+ +G+ R+Y    CPFA+R  +    KG++ ++  + +NL+++P W+ +K  P   +P LE++ G++I ES    +Y+D  + G  LLPDDP ++   K   ELFS + +     + +  K D A   ++    F  LE+ L       F     S +D    P+ ER +
Sbjct:   18 PVPEGSIRIYSMRFCPFAERTRLVLKAKGIRHEV--ININLKNKPEWFFKK-NPFGLVPVLENSQGQLIYESAITCEYLDEAYPGKKLLPDDPYEKACQKMILELFSKVPSLVGSFIRSQNKEDYAGLKEEFRKEFTKLEEVLTNKKTTFFGGNSISMIDYLIWPWFERLE 185          
BLAST of FC929859 vs. ExPASy Swiss-Prot
Match: GSTO1_RAT (Glutathione S-transferase omega-1 OS=Rattus norvegicus GN=Gsto1 PE=1 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 7.385e-12
Identity = 54/175 (30.86%), Postives = 88/175 (50.29%), Query Frame = 3
Query:  141 PLFDGTPRLYMSYSCPFAQRAWITRNYKGLQDKIKLVPLNLQDRPAWYKEKVYPVNKIPALEH-NGKVIGESLDLIKYVDSNFEGPSLLPDDPEKR---KFADELFSHIDTFTNDVYTSFKGDPAKQAGPAF-DYLEKALDKFDDG------PFFLG-QFSQVDIAYIPFVERFQ 629
            P+ +G  R+Y    CPFAQR  +    KG++ +I  + +NL+++P W+ EK  P   +P LE+  G +I ES+   +Y+D  +    L PDDP ++   K   ELFS + +    + TSF     K+  P   + L+K   K ++        FF G   S +D    P+ +R +
Sbjct:   18 PVPEGQIRVYSMRFCPFAQRTLMVLKAKGIRHEI--ININLKNKPEWFFEK-NPFGLVPVLENTQGHLITESVITCEYLDEAYPEKKLFPDDPYEKACQKMTFELFSKVPS----LVTSFIRAKRKEDHPGIKEELKKEFSKLEEAMANKRTAFFGGNSLSMIDYLIWPWFQRLE 185          
BLAST of FC929859 vs. ExPASy Swiss-Prot
Match: GSTO1_PIG (Glutathione S-transferase omega-1 OS=Sus scrofa GN=GSTO1 PE=1 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 1.260e-11
Identity = 51/171 (29.82%), Postives = 84/171 (49.12%), Query Frame = 3
Query:  141 PLFDGTPRLYMSYSCPFAQRAWITRNYKGLQDKIKLVPLNLQDRPAWYKEKVYPVNKIPALEHN-GKVIGESLDLIKYVDSNFEGPSLLPDDPEKR---KFADELFSHID----TFTNDVYTSFKGDPAKQAGPAFDYLEKALDKFDDGPFFLGQFSQVDIAYIPFVERFQ 629
            P+ +G  R+Y    CPFAQR  +  N KG++ ++  + +NL+++P W+ +K  P   +P LE++ G++I ES    +Y+D  + G  LLPDDP ++   K   EL S +      F      +      ++    F  LE+ L K     F     S +D    P+ ER +
Sbjct:   18 PVPEGLIRVYSMRFCPFAQRTLLVLNAKGIRHQV--ININLKNKPEWFFQK-NPSGLVPVLENSQGQLIYESAITCEYLDEAYPGKKLLPDDPYEKACQKMVFELSSKVPPLLIRFIRRENEADCSGLKEELRKEFSKLEEVLTKKKTTYFGGSSLSMIDYLIWPWFERLE 185          
BLAST of FC929859 vs. ExPASy Swiss-Prot
Match: GSTO1_CAEEL (Glutathione transferase omega-1 OS=Caenorhabditis elegans GN=gsto-1 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.645e-11
Identity = 42/106 (39.62%), Postives = 62/106 (58.49%), Query Frame = 3
Query:  138 PPLFDGTPRLYMSYSCPFAQRAWITRNYKGLQDKIKLVPLNLQDRPAWYKEKVYPVNKIPALEHNGKVIGESLDLIKYVDSNFEGPSLLPDDP----EKRKFADEL 443
            PPL  G+ R+Y    CP+A+RA +    KG++ ++  V LN+ D+  WY  K Y   K PA+EHNGKV+ ES  + +Y+D  F    +LP DP    +++  AD L
Sbjct:   18 PPLSKGSFRVYNMRFCPWAERAMLYVAAKGIEAEV--VNLNVTDKLEWYWTKHYQ-GKAPAVEHNGKVVIESGFIPEYLDDAFPETRILPTDPYEKVQQKLLADRL 120          
BLAST of FC929859 vs. ExPASy Swiss-Prot
Match: GSTO1_MOUSE (Glutathione S-transferase omega-1 OS=Mus musculus GN=Gsto1 PE=2 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 2.149e-11
Identity = 59/192 (30.73%), Postives = 94/192 (48.96%), Query Frame = 3
Query:  141 PLFDGTPRLYMSYSCPFAQRAWITRNYKGLQDKIKLVPLNLQDRPAWYKEKVYPVNKIPALEHN-GKVIGESLDLIKYVDSNFEGPSLLPDDPEKR---KFADELFSHIDTFTNDVYTSFKGDPAKQAGPAF-DYLEKALDKFDDG----PFFLG--QFSQVDIAYIPFVERFQIFLSEEFKYDITAXRPKL 683
            P+ +G  R+Y    CPFAQR  +    KG++ ++  + +NL+++P W+ EK  P+  +P LE++ G ++ ES+   +Y+D  +    L PDDP K+   K   E FS +      +  SF     K+  P   + LE    K ++G      FLG    S VD    P+ +R +     E K +  A  PKL
Sbjct:   18 PVPEGQIRVYSMRFCPFAQRTLMVLKAKGIRHEV--ININLKNKPEWFFEK-NPLGLVPVLENSQGHLVTESVITCEYLDEAYPEKKLFPDDPYKKARQKMTLESFSKVP----PLIASFVRSKRKEDSPNLREALENEFKKLEEGMDNYKSFLGGDSPSMVDYLTWPWFQRLEAL---ELK-ECLAHTPKL 198          
The following BLAST results are available for this feature:
BLAST of FC929859 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
IN21B_ORYSJ2.578e-7364.85Protein IN2-1 homolog B OS=Oryza sativa subsp. jap... [more]
IN21B_ORYSI2.578e-7364.85Protein IN2-1 homolog B OS=Oryza sativa subsp. ind... [more]
IN21A_ORYSJ1.049e-6660.70Protein IN2-1 homolog A OS=Oryza sativa subsp. jap... [more]
IN21_MAIZE2.674e-6255.94Protein IN2-1 OS=Zea mays GN=IN2-1 PE=2 SV=1[more]
GSTO1_HUMAN5.654e-1229.82Glutathione S-transferase omega-1 OS=Homo sapiens ... [more]
GSTO1_RAT7.385e-1230.86Glutathione S-transferase omega-1 OS=Rattus norveg... [more]
GSTO1_PIG1.260e-1129.82Glutathione S-transferase omega-1 OS=Sus scrofa GN... [more]
GSTO1_CAEEL1.645e-1139.62Glutathione transferase omega-1 OS=Caenorhabditis ... [more]
GSTO1_MOUSE2.149e-1130.73Glutathione S-transferase omega-1 OS=Mus musculus ... [more]
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Properties
Property NameValue
Genbank descriptionC34001B11EF PostHarvC1 Citrus clementina cDNA clone C34001B11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929859 ID=FC929859; Name=FC929859; organism=Citrus clementina; type=EST; length=689bp
GACATTTCGGTATCAGGTAACTTTCTTCTTCAAAGCAAAAGAAAAGCTTT
CAGGAAACCTCTAGAGTCTTACCTTCCTCAATGGCAACCACAGCGCAAGA
GAATCTTCCTCCACCGTTGGATTCGAAGGCCGAGCTACCACCTCTGTTCG
ATGGAACTCCCAGGTTGTACATGTCTTACTCGTGCCCATTTGCTCAGCGT
GCGTGGATCACCAGGAACTACAAGGGATTACAAGACAAGATTAAGTTAGT
TCCACTGAACCTCCAAGATAGGCCCGCTTGGTACAAGGAGAAGGTTTATC
CTGTTAACAAGATTCCAGCACTGGAGCACAATGGCAAAGTTATTGGAGAA
TCTCTTGATTTGATTAAATATGTTGACAGCAATTTTGAAGGGCCTTCACT
TTTACCTGATGATCCTGAGAAACGAAAGTTTGCTGATGAACTGTTTTCCC
ACATCGATACCTTCACCAACGATGTGTATACTTCATTCAAAGGAGACCCA
GCAAAACAAGCTGGTCCTGCTTTTGATTACTTAGAGAAGGCCCTTGATAA
ATTTGATGATGGCCCGTTCTTCCTTGGACAGTTCAGTCAGGTGGACATAG
CCTATATTCCATTTGTTGAGAGATTCCAGATCTTCTTATCAGAAGAATTT
AAGTATGACATCACTGCANGCAGGCCTAAACTGGCAGCA
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